Wall clock time and date at job start Fri Apr 10 2020 20:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48497 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46950 * 299.99915 * 3 2 1 6 6 H 1.48497 * 109.47217 * 59.99650 * 3 2 1 7 7 C 1.38810 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00033 * 203.37691 * 7 2 1 9 9 N 1.36933 * 120.00378 * 23.37247 * 7 2 1 10 10 C 1.46497 * 120.00354 * 230.16183 * 9 7 2 11 11 C 1.54261 * 110.03294 * 57.90870 * 10 9 7 12 12 C 1.54965 * 104.16060 * 217.13665 * 11 10 9 13 13 C 1.54887 * 102.77653 * 37.88413 * 12 11 10 14 14 C 1.53872 * 110.03411 * 300.68539 * 10 9 7 15 15 S 1.65606 * 119.99727 * 50.16040 * 9 7 2 16 16 O 1.42101 * 106.40133 * 343.34743 * 15 9 7 17 17 O 1.42102 * 106.40356 * 210.42917 * 15 9 7 18 18 C 1.76194 * 107.21731 * 96.88809 * 15 9 7 19 19 C 1.33386 * 125.20308 * 90.00449 * 18 15 9 20 20 C 1.38425 * 114.92142 * 179.97438 * 19 18 15 21 21 C 1.33387 * 114.92103 * 359.97438 * 20 19 18 22 22 S 1.75879 * 109.59512 * 0.02562 * 21 20 19 23 23 H 0.96998 * 119.99675 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.01692 * 179.29841 * 10 9 7 25 25 H 1.08999 * 110.48979 * 335.78142 * 11 10 9 26 26 H 1.08998 * 110.49082 * 98.42618 * 11 10 9 27 27 H 1.08999 * 110.72199 * 279.57424 * 12 11 10 28 28 H 1.09000 * 110.92618 * 156.29349 * 12 11 10 29 29 H 1.09007 * 110.48898 * 203.40284 * 13 12 11 30 30 H 1.09003 * 110.59824 * 80.81835 * 13 12 11 31 31 H 1.08996 * 110.03643 * 238.56980 * 14 10 9 32 32 H 1.09004 * 110.02788 * 359.95642 * 14 10 9 33 33 H 1.08004 * 122.54016 * 0.24481 * 19 18 15 34 34 H 1.08001 * 122.54021 * 180.02562 * 20 19 18 35 35 H 1.07999 * 125.19930 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0238 -1.2404 0.3717 9 7 1.4099 -2.3396 -0.4694 10 6 1.4290 -3.5639 0.3349 11 6 0.7783 -3.3036 1.7091 12 6 1.6275 -4.1439 2.6960 13 6 3.0637 -3.9763 2.1408 14 6 2.8814 -3.9919 0.6090 15 16 0.6621 -2.3313 -1.9470 16 8 0.4666 -0.9662 -2.2900 17 8 -0.3999 -3.2717 -1.8646 18 6 1.8103 -2.9786 -3.1162 19 6 1.9335 -4.2664 -3.4410 20 6 2.9064 -4.5388 -4.3873 21 6 3.5729 -3.4721 -4.8313 22 16 2.9687 -2.0253 -4.0344 23 1 -0.4849 0.8401 -0.0004 24 1 0.8970 -4.3604 -0.1852 25 1 0.8344 -2.2452 1.9635 26 1 -0.2575 -3.6430 1.7113 27 1 1.3238 -5.1905 2.6718 28 1 1.5557 -3.7458 3.7082 29 1 3.6949 -4.8063 2.4584 30 1 3.4916 -3.0274 2.4644 31 1 3.0539 -4.9964 0.2227 32 1 3.5720 -3.2890 0.1429 33 1 1.3178 -5.0376 -3.0023 34 1 3.1098 -5.5391 -4.7400 35 1 4.3633 -3.4937 -5.5670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057565370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:51 Heat of formation + Delta-G solvation = -40.891200 kcal Electronic energy + Delta-G solvation = -21495.988187 eV Core-core repulsion = 18326.675022 eV Total energy + Delta-G solvation = -3169.313165 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -37.87127 -37.19733 -35.54806 -34.21952 -33.87687 -31.41518 -29.16438 -27.95258 -26.89792 -24.20814 -23.72537 -20.02908 -19.54713 -19.34678 -18.73287 -18.04123 -16.30315 -15.84034 -15.34276 -15.17639 -14.69167 -14.32181 -13.91203 -13.70276 -12.95128 -12.69581 -12.64400 -12.39246 -12.02357 -11.88945 -11.74703 -11.38760 -11.10582 -10.73116 -10.51802 -10.46960 -10.41351 -10.36397 -10.34199 -10.31532 -10.05945 -9.91398 -9.86733 -9.62466 -8.79064 -8.67172 -8.05630 -7.66137 -6.56892 -4.17961 1.12693 1.89555 2.15774 2.44514 3.00317 3.21235 3.29165 3.33632 4.14206 4.64588 4.92379 5.21793 5.26948 5.33148 5.45271 5.53692 5.63880 5.80565 6.02054 6.07894 6.21031 6.22620 6.28809 6.34516 6.43460 6.45964 6.50473 6.51381 6.69758 6.79058 6.85402 7.00333 7.23107 7.38770 7.62904 8.21345 8.88356 9.32150 10.49588 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.009192 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.084669 B = 3045.377884 C = 4078.254267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.264 4.264 8 H 0.084 0.916 9 N -0.804 5.804 10 C 0.158 3.842 11 C -0.117 4.117 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.136 4.136 15 S 2.564 3.436 16 O -0.949 6.949 17 O -1.004 7.004 18 C -0.737 4.737 19 C -0.050 4.050 20 C -0.156 4.156 21 C -0.219 4.219 22 S 0.192 5.808 23 H 0.280 0.720 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.123 -5.870 -0.644 9.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.413 4.413 8 H 0.102 0.898 9 N -0.628 5.628 10 C 0.050 3.950 11 C -0.157 4.157 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.175 4.175 15 S 2.661 3.339 16 O -0.937 6.937 17 O -0.994 6.994 18 C -0.928 4.928 19 C -0.082 4.082 20 C -0.188 4.188 21 C -0.356 4.356 22 S 0.456 5.544 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.425 -4.142 -1.267 7.749 hybrid contribution 0.617 -1.154 -0.561 1.424 sum 7.042 -5.297 -1.828 8.999 Atomic orbital electron populations 1.69853 1.07187 1.29610 1.35302 1.25709 0.94953 1.00836 0.93790 0.86064 0.80175 0.81516 0.78164 1.18717 1.19759 1.20577 1.19002 0.97913 0.85263 1.39145 0.89811 1.52979 1.72878 1.13774 1.23163 1.21315 0.94293 0.86666 0.92772 1.22614 0.97520 1.02271 0.93265 1.22476 0.95764 0.99361 0.98599 1.22240 0.96573 1.00825 0.95691 1.22562 0.98652 1.00270 0.96061 1.10659 0.77011 0.73253 0.73012 1.93391 1.84463 1.32559 1.83265 1.93318 1.54345 1.65139 1.86600 1.37785 1.24314 1.06571 1.24139 1.19875 0.97082 0.94967 0.96326 1.20328 0.98553 0.99531 1.00376 1.26012 1.05722 0.97810 1.06065 1.84077 1.28708 1.07975 1.33600 0.90931 0.90959 0.88658 0.92575 0.92532 0.92275 0.93067 0.91520 0.92989 0.90626 0.84106 0.84722 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.04 11.87 55.49 0.66 -20.38 16 2 C 0.07 1.64 3.96 -17.43 -0.07 1.57 16 3 Si 0.92 19.72 29.61 -169.99 -5.03 14.69 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.26 -6.32 7.33 -15.06 -0.11 -6.43 16 8 H 0.08 1.88 7.23 -52.48 -0.38 1.50 16 9 N -0.80 -18.85 2.63 -52.35 -0.14 -18.99 16 10 C 0.16 3.20 3.26 -66.82 -0.22 2.98 16 11 C -0.12 -2.25 6.42 -25.03 -0.16 -2.41 16 12 C -0.12 -1.88 6.91 -24.70 -0.17 -2.05 16 13 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 14 C -0.14 -2.32 6.24 -25.61 -0.16 -2.48 16 15 S 2.56 64.82 5.43 -107.50 -0.58 64.24 16 16 O -0.95 -26.66 14.29 -57.17 -0.82 -27.48 16 17 O -1.00 -27.24 16.60 -57.17 -0.95 -28.19 16 18 C -0.74 -15.82 6.57 29.04 0.19 -15.63 16 19 C -0.05 -0.93 9.84 -41.21 -0.41 -1.34 16 20 C -0.16 -2.45 10.18 -41.21 -0.42 -2.87 16 21 C -0.22 -3.35 11.23 29.04 0.33 -3.02 16 22 S 0.19 3.61 23.22 -107.50 -2.50 1.11 16 23 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.07 1.47 7.14 -51.93 -0.37 1.10 16 25 H 0.09 2.05 7.03 -51.93 -0.37 1.68 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.36 6.93 -51.93 -0.36 1.00 16 33 H 0.14 2.49 8.05 -52.48 -0.42 2.07 16 34 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -30.12 313.42 -10.42 -40.54 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.42 Total: 3.33 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: -1.37 Total: -33.60 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.52 Total: -39.36 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -1.77 Total: -55.67 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: 68.43 SS G_CDS: -3.08 Total: 65.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.12 -10.42 -40.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057565370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.355 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds