Wall clock time and date at job start Fri Apr 10 2020 20:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.02712 * 2 1 4 4 C 1.30887 * 108.20190 * 180.02562 * 3 2 1 5 5 Br 1.89102 * 125.90979 * 180.02562 * 4 3 2 6 6 C 1.39943 * 108.18146 * 359.76647 * 4 3 2 7 7 C 1.34948 * 126.02978 * 180.02562 * 2 1 3 8 8 C 1.50697 * 126.12129 * 359.95912 * 7 2 1 9 9 N 1.46905 * 109.47066 * 275.00071 * 8 7 2 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00228 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46757 * 60.00769 * 17 15 13 19 19 H 1.48495 * 109.46824 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47105 * 300.00477 * 17 15 13 21 21 H 1.09000 * 109.47126 * 269.97261 * 1 2 3 22 22 H 1.09002 * 109.47047 * 29.98281 * 1 2 3 23 23 H 1.09003 * 109.46990 * 149.97728 * 1 2 3 24 24 H 1.08004 * 126.04869 * 180.24681 * 6 4 3 25 25 H 1.09001 * 109.47558 * 155.00235 * 8 7 2 26 26 H 1.08998 * 109.47216 * 34.99897 * 8 7 2 27 27 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 28 28 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 29 29 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 30 30 H 1.08995 * 109.46615 * 299.99641 * 11 10 9 31 31 H 1.08996 * 109.46939 * 60.00272 * 11 10 9 32 32 H 1.08993 * 109.47740 * 299.99810 * 12 11 10 33 33 H 1.09005 * 109.47573 * 59.99976 * 12 11 10 34 34 H 0.97002 * 120.00555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2889 1.1329 0.0000 4 6 3.5350 0.7323 -0.0006 5 35 5.0597 1.8508 -0.0001 6 6 3.5437 -0.6671 0.0045 7 6 2.2588 -1.0913 -0.0005 8 6 1.7969 -2.5258 -0.0003 9 7 1.5327 -2.9549 1.3797 10 6 1.0799 -4.3519 1.4190 11 6 0.8149 -4.7614 2.8691 12 6 0.3427 -6.2162 2.9099 13 6 0.0823 -6.6198 4.3383 14 1 0.2375 -5.9096 5.1371 15 6 -0.3553 -7.8954 4.6255 16 7 -0.5448 -8.7601 3.6528 17 14 -0.6788 -8.3955 6.3960 18 1 -1.7278 -7.5179 6.9744 19 1 -1.1369 -9.8075 6.4356 20 1 0.5716 -8.2589 7.1853 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 4.4208 -1.2972 0.0091 25 1 2.5718 -3.1572 -0.4350 26 1 0.8839 -2.6136 -0.5891 27 1 0.8642 -2.3451 1.8262 28 1 0.1620 -4.4527 0.8398 29 1 1.8502 -4.9955 0.9942 30 1 1.7325 -4.6605 3.4486 31 1 0.0444 -4.1177 3.2934 32 1 -0.5749 -6.3168 2.3305 33 1 1.1129 -6.8603 2.4854 34 1 -0.8523 -9.6576 3.8548 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308955607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:06 Heat of formation + Delta-G solvation = 66.104065 kcal Electronic energy + Delta-G solvation = -15991.924586 eV Core-core repulsion = 13200.319572 eV Total energy + Delta-G solvation = -2791.605014 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 301.049 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.56377 -36.68922 -34.07457 -33.50058 -31.90334 -31.16646 -30.13999 -26.98018 -26.58806 -24.66619 -22.32404 -21.18141 -20.48839 -19.80377 -17.00213 -16.35215 -16.08517 -15.70615 -14.73614 -14.62093 -14.20663 -14.14702 -13.86645 -13.32388 -12.96752 -12.67827 -12.64242 -12.19179 -11.69709 -11.49751 -11.23776 -11.20914 -10.85616 -10.65069 -10.57581 -10.48630 -9.76148 -9.50614 -9.31297 -9.11001 -8.81500 -8.39986 -8.36228 -6.02120 -4.04446 0.95107 1.43928 2.30768 2.45381 3.32398 3.36695 3.39442 4.14240 4.29911 4.44228 4.51395 4.79654 4.85339 5.10734 5.15754 5.32723 5.33870 5.42768 5.66041 5.68398 5.80581 6.08667 6.20197 6.57339 6.63184 6.66358 7.05398 7.12599 7.20144 7.37504 7.64405 7.78437 7.97631 8.40656 9.02452 9.59807 11.09251 Molecular weight = 301.05amu Principal moments of inertia in cm(-1) A = 0.032381 B = 0.002360 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.484235 B =11863.748959 C =12235.851633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.358 5.358 3 N -0.266 5.266 4 C 0.069 3.931 5 Br 0.027 6.973 6 C -0.225 4.225 7 C 0.102 3.898 8 C 0.119 3.881 9 N -0.683 5.683 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.158 0.842 25 H 0.102 0.898 26 H 0.043 0.957 27 H 0.337 0.663 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.017 0.983 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 21.172 -11.887 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.142 5.142 3 N -0.091 5.091 4 C -0.175 4.175 5 Br 0.108 6.892 6 C -0.257 4.257 7 C -0.026 4.026 8 C -0.011 4.011 9 N -0.314 5.314 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.100 0.900 22 H 0.111 0.889 23 H 0.109 0.891 24 H 0.176 0.824 25 H 0.121 0.879 26 H 0.061 0.939 27 H 0.155 0.845 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.762 22.222 -11.803 26.332 hybrid contribution -1.002 -1.136 0.638 1.644 sum 6.760 21.086 -11.164 24.798 Atomic orbital electron populations 1.21997 0.73663 1.04827 1.04140 1.48492 1.06633 1.03043 1.56061 1.77449 0.99982 1.07993 1.23641 1.23757 0.92652 0.94216 1.06880 1.96734 1.29187 1.65412 1.97843 1.21087 0.97216 0.92230 1.15125 1.21104 0.90661 0.90420 1.00420 1.20563 1.00845 0.87813 0.91916 1.60585 1.51645 1.04902 1.14300 1.22201 0.98107 0.86689 0.99892 1.21634 1.00536 0.99882 0.92477 1.19055 0.96211 0.89161 0.97037 1.21213 1.44599 0.97201 0.92907 0.92710 1.25024 0.95592 0.96679 0.97157 1.69949 1.46687 1.05440 1.31536 0.86653 0.78706 0.77447 0.85178 1.20271 1.21290 1.20171 0.89980 0.88876 0.89097 0.82388 0.87939 0.93878 0.84530 0.95441 0.90904 0.92345 0.93666 0.96811 0.96482 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.27 59.85 0.67 1.38 16 2 N -0.36 -4.07 4.01 -63.88 -0.26 -4.32 16 3 N -0.27 -3.54 12.58 31.91 0.40 -3.14 16 4 C 0.07 0.87 7.71 -17.32 -0.13 0.73 16 5 Br 0.03 0.28 34.11 -68.01 -2.32 -2.04 16 6 C -0.23 -2.71 10.70 -39.99 -0.43 -3.14 16 7 C 0.10 1.18 6.44 -82.27 -0.53 0.65 16 8 C 0.12 1.28 5.85 -4.97 -0.03 1.25 16 9 N -0.68 -9.02 6.49 -115.05 -0.75 -9.77 16 10 C 0.06 0.92 5.69 -3.82 -0.02 0.90 16 11 C -0.11 -2.12 5.41 -26.73 -0.14 -2.26 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 0.53 7.15 -51.93 -0.37 0.16 16 24 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 25 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.40 7.24 -51.93 -0.38 0.03 16 27 H 0.34 4.25 8.72 -39.29 -0.34 3.91 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -31.51 314.46 -8.49 -40.00 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.86 Total: -2.51 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.16 Total: -13.49 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.13 Total: -43.22 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 35 Polarization: 0.28 SS G_CDS: -2.32 Total: -2.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.51 -8.49 -40.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308955607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.103 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds