Wall clock time and date at job start Fri Apr 10 2020 20:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47106 * 2 1 4 4 C 1.53007 * 109.47175 * 239.99641 * 2 1 3 5 5 C 1.50698 * 109.46930 * 175.00144 * 4 2 1 6 6 H 1.07996 * 120.00132 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99866 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46706 * 120.00245 * 9 7 5 12 12 H 1.48498 * 109.47113 * 240.00116 * 9 7 5 13 13 N 1.46896 * 109.46957 * 119.99668 * 2 1 3 14 14 C 1.46899 * 111.00331 * 275.00090 * 13 2 1 15 15 H 1.09001 * 109.46910 * 35.00046 * 14 13 2 16 16 C 1.53008 * 109.47117 * 275.00277 * 14 13 2 17 17 C 1.50696 * 109.47388 * 154.99966 * 14 13 2 18 18 C 1.38243 * 119.99181 * 25.02285 * 17 14 13 19 19 C 1.38204 * 120.02450 * 180.02562 * 18 17 14 20 20 C 1.38382 * 120.01058 * 359.96059 * 19 18 17 21 21 Cl 1.73607 * 120.00571 * 180.02562 * 20 19 18 22 22 C 1.38310 * 119.99091 * 0.02562 * 20 19 18 23 23 C 1.38335 * 119.99225 * 204.99786 * 17 14 13 24 24 Cl 1.73603 * 120.00986 * 0.02711 * 23 17 14 25 25 H 1.08999 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47200 * 300.00577 * 1 2 3 27 27 H 1.09003 * 109.47081 * 60.00568 * 1 2 3 28 28 H 1.09000 * 109.47181 * 295.00126 * 4 2 1 29 29 H 1.08992 * 109.46812 * 55.00279 * 4 2 1 30 30 H 0.96998 * 120.00154 * 179.97438 * 8 7 5 31 31 H 1.00905 * 111.00561 * 38.95773 * 13 2 1 32 32 H 1.08995 * 109.46619 * 299.99819 * 16 14 13 33 33 H 1.09002 * 109.47227 * 59.99606 * 16 14 13 34 34 H 1.08994 * 109.46878 * 180.02562 * 16 14 13 35 35 H 1.07992 * 119.98793 * 0.02562 * 18 17 14 36 36 H 1.07992 * 119.99364 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.01162 * 180.27344 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0863 -0.5391 7 6 4.2305 -1.1937 -2.3577 8 7 3.5765 -1.8380 -3.2993 9 14 6.0921 -1.0613 -2.4367 10 1 6.5837 -0.2909 -1.2662 11 1 6.6863 -2.4222 -2.4180 12 1 6.4863 -0.3661 -3.6883 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2227 2.3469 15 1 1.2575 0.9330 2.2907 16 6 3.4111 0.9810 2.3224 17 6 1.9785 -0.5675 3.6259 18 6 2.3592 -1.8962 3.6501 19 6 2.2637 -2.6217 4.8226 20 6 1.7877 -2.0180 5.9732 21 17 1.6684 -2.9292 7.4461 22 6 1.4069 -0.6885 5.9496 23 6 1.5026 0.0371 4.7755 24 17 1.0245 1.7057 4.7449 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.7517 -1.7716 -1.2055 29 1 1.6054 -0.2619 -2.1369 30 1 4.0608 -2.2448 -4.0347 31 1 1.4495 -1.4979 1.4101 32 1 4.2358 0.2707 2.3786 33 1 3.4862 1.5526 1.3972 34 1 3.4578 1.6596 3.1740 35 1 2.7314 -2.3675 2.7526 36 1 2.5609 -3.6597 4.8409 37 1 1.0394 -0.2158 6.8485 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351415708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:54:51 Heat of formation + Delta-G solvation = -16.553272 kcal Electronic energy + Delta-G solvation = -19953.763505 eV Core-core repulsion = 16781.418299 eV Total energy + Delta-G solvation = -3172.345206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89666 -38.55362 -37.73395 -37.23014 -35.22964 -33.83623 -31.97572 -30.56392 -29.57316 -28.78624 -25.19573 -24.51481 -23.89848 -21.65716 -21.12121 -18.54445 -18.26470 -17.33909 -16.87280 -16.37152 -15.80883 -15.66592 -15.48363 -14.98488 -14.69316 -14.50837 -14.11168 -13.76493 -13.60078 -13.35803 -13.20183 -13.10413 -12.99454 -12.87539 -12.63873 -12.37343 -12.27556 -12.20517 -11.99276 -11.95888 -11.86449 -11.56251 -11.10186 -11.02760 -10.44382 -9.98567 -9.63770 -9.04981 -8.04878 -6.08403 -0.08793 0.06660 0.80076 1.25772 1.43338 1.45141 1.57066 2.39503 2.51013 3.20446 3.33291 3.61125 3.75039 3.97607 4.12366 4.24881 4.30497 4.38050 4.50076 4.53360 4.59937 4.75837 4.80132 4.86765 5.01020 5.04013 5.12420 5.23670 5.27286 5.31946 5.42333 5.55583 5.59564 5.74190 5.95914 6.35747 6.50509 6.71262 7.06479 7.57157 9.07607 Molecular weight = 301.07amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.003947 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.197224 B = 7091.968993 C = 7765.204044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 H 0.061 0.939 4 C 0.040 3.960 5 C -0.490 4.490 6 H 0.061 0.939 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.952 3.048 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.669 5.669 14 C 0.126 3.874 15 H 0.059 0.941 16 C -0.128 4.128 17 C -0.074 4.074 18 C -0.087 4.087 19 C -0.100 4.100 20 C -0.032 4.032 21 Cl -0.056 7.056 22 C -0.102 4.102 23 C -0.028 4.028 24 Cl -0.055 7.055 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.056 0.944 28 H -0.008 1.008 29 H -0.010 1.010 30 H 0.257 0.743 31 H 0.338 0.662 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 2.163 21.549 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 H 0.079 0.921 4 C 0.002 3.998 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.585 5.585 9 Si 0.778 3.222 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.301 5.301 14 C 0.017 3.983 15 H 0.077 0.923 16 C -0.186 4.186 17 C -0.075 4.075 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.059 4.059 21 Cl -0.027 7.027 22 C -0.121 4.121 23 C -0.055 4.055 24 Cl -0.026 7.026 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.011 0.989 29 H 0.008 0.992 30 H 0.065 0.935 31 H 0.158 0.842 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.167 0.833 36 H 0.174 0.826 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.055 2.239 21.374 22.077 hybrid contribution -0.058 0.016 -0.319 0.325 sum -5.113 2.255 21.055 21.784 Atomic orbital electron populations 1.22428 0.97064 1.01753 1.01757 1.21475 0.91718 0.97079 0.90626 0.92101 1.18970 0.95174 0.94209 0.91427 1.21541 0.93254 1.31741 1.06361 0.92061 1.25811 1.02446 0.95924 0.95947 1.70099 1.36831 1.38388 1.13171 0.85592 0.81228 0.77542 0.77802 1.18848 1.21114 1.21207 1.60586 1.58139 1.08952 1.02381 1.20409 0.98335 0.93172 0.86416 0.92335 1.21699 0.96141 0.99411 1.01301 1.19994 0.98227 0.94937 0.94356 1.21186 0.97752 0.92694 0.98921 1.21384 0.98263 1.01741 0.90504 1.20817 1.03766 0.92457 0.88855 1.98383 1.96723 1.73702 1.33854 1.20977 1.00811 0.92417 0.97918 1.20638 1.03412 0.86824 0.94647 1.98376 1.90206 1.15466 1.98576 0.92805 0.92105 0.92496 0.98944 0.99178 0.93470 0.84231 0.92964 0.93171 0.91488 0.83331 0.82595 0.82467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.42 9.15 71.98 0.66 -4.76 16 2 C 0.10 3.85 2.34 44.92 0.11 3.96 16 3 H 0.06 2.40 7.11 -2.39 -0.02 2.38 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.49 -27.03 8.84 25.60 0.23 -26.81 16 6 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -57.35 13.29 21.45 0.28 -57.07 16 9 Si 0.95 44.94 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.67 -22.69 5.03 -473.30 -2.38 -25.07 16 14 C 0.13 3.58 2.15 44.17 0.09 3.67 16 15 H 0.06 1.64 6.09 -2.39 -0.01 1.62 16 16 C -0.13 -3.78 9.38 71.98 0.68 -3.11 16 17 C -0.07 -1.81 4.93 -19.84 -0.10 -1.91 16 18 C -0.09 -2.03 8.86 22.26 0.20 -1.84 16 19 C -0.10 -1.97 9.83 22.30 0.22 -1.75 16 20 C -0.03 -0.61 6.32 22.32 0.14 -0.47 16 21 Cl -0.06 -0.94 28.96 -2.72 -0.08 -1.02 16 22 C -0.10 -1.95 9.62 22.31 0.21 -1.73 16 23 C -0.03 -0.61 6.31 22.32 0.14 -0.47 16 24 Cl -0.06 -1.16 27.16 -2.72 -0.07 -1.23 16 25 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 26 H 0.06 1.65 7.43 -2.39 -0.02 1.63 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.34 10.71 7.00 -89.69 -0.63 10.08 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.64 7.43 -2.39 -0.02 1.62 16 34 H 0.07 1.70 7.90 -2.39 -0.02 1.68 16 35 H 0.15 3.77 6.97 -2.91 -0.02 3.75 16 36 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -61.17 335.93 3.40 -57.77 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.45 Total: 12.59 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.18 Total: -32.94 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.09 Total: -82.14 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.15 Total: -2.25 kcal Total: -61.17 3.40 -57.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351415708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.217 kcal (2) G-P(sol) polarization free energy of solvation -61.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds