Wall clock time and date at job start Fri Apr 10 2020 20:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38380 * 119.92142 * 2 1 4 4 F 1.35105 * 119.88773 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.22560 * 180.02562 * 3 2 1 6 6 C 1.39678 * 120.06862 * 359.96158 * 5 3 2 7 7 C 1.47748 * 120.07986 * 180.02562 * 6 5 3 8 8 O 1.21470 * 120.00050 * 180.02562 * 7 6 5 9 9 O 1.34705 * 120.00069 * 359.97438 * 7 6 5 10 10 C 1.39419 * 119.84094 * 359.76880 * 6 5 3 11 11 C 1.39091 * 119.77620 * 0.50117 * 10 6 5 12 12 C 1.48406 * 120.03602 * 179.77241 * 11 10 6 13 13 C 1.40030 * 120.82131 * 129.72218 * 12 11 10 14 14 C 1.38504 * 119.42674 * 180.02562 * 13 12 11 15 15 N 1.31476 * 121.14350 * 0.02562 * 14 13 12 16 16 C 1.33650 * 121.79072 * 359.97438 * 15 14 13 17 17 C 1.41428 * 119.77644 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99483 * 187.19403 * 17 16 15 19 19 C 1.40030 * 120.00290 * 7.20200 * 17 16 15 20 20 N 1.30744 * 120.00119 * 7.21876 * 19 17 16 21 21 Si 1.86800 * 120.00148 * 187.22183 * 19 17 16 22 22 H 1.48500 * 109.46875 * 265.10290 * 21 19 17 23 23 H 1.48498 * 109.47280 * 25.10545 * 21 19 17 24 24 H 1.48501 * 109.47195 * 145.10541 * 21 19 17 25 25 C 1.39301 * 120.82089 * 309.98604 * 12 11 10 26 26 H 1.09011 * 109.46797 * 270.01587 * 1 2 3 27 27 H 1.08995 * 109.47394 * 30.01638 * 1 2 3 28 28 H 1.08996 * 109.47315 * 150.02052 * 1 2 3 29 29 H 1.08000 * 119.96233 * 179.97438 * 5 3 2 30 30 H 0.96700 * 117.00620 * 180.02562 * 9 7 6 31 31 H 1.07998 * 120.10807 * 180.25425 * 10 6 5 32 32 H 1.08001 * 120.28912 * 359.97438 * 13 12 11 33 33 H 1.07997 * 119.42965 * 180.02562 * 14 13 12 34 34 H 0.96993 * 120.00236 * 180.02562 * 20 19 17 35 35 H 1.08002 * 120.57963 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1994 0.0000 4 9 1.5178 2.3671 0.0005 5 6 3.5796 1.2067 -0.0005 6 6 4.2859 0.0016 -0.0003 7 6 5.7633 0.0092 -0.0003 8 8 6.3760 -1.0397 -0.0005 9 8 6.4309 1.1792 -0.0010 10 6 3.5933 -1.2084 0.0054 11 6 2.2024 -1.2082 0.0002 12 6 1.4593 -2.4928 0.0011 13 6 0.4314 -2.7265 0.9229 14 6 -0.2427 -3.9361 0.8983 15 7 0.0661 -4.8690 0.0248 16 6 1.0384 -4.6962 -0.8758 17 6 1.3353 -5.7287 -1.7956 18 1 2.1928 -5.6418 -2.4465 19 6 0.5177 -6.8635 -1.8624 20 7 -0.5960 -6.9080 -1.1790 21 14 1.0182 -8.3139 -2.9279 22 1 0.3667 -8.1994 -4.2575 23 1 2.4934 -8.3175 -3.0980 24 1 0.5921 -9.5779 -2.2752 25 6 1.7709 -3.4981 -0.9114 26 1 -0.3633 0.0003 1.0278 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.1140 2.1452 -0.0010 30 1 7.3968 1.1336 -0.0014 31 1 4.1350 -2.1426 0.0098 32 1 0.1672 -1.9703 1.6474 33 1 -1.0357 -4.1162 1.6089 34 1 -1.1622 -7.6942 -1.2249 35 1 2.5601 -3.3579 -1.6352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242211213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:31 Heat of formation + Delta-G solvation = -86.641087 kcal Electronic energy + Delta-G solvation = -23059.953251 eV Core-core repulsion = 19322.832189 eV Total energy + Delta-G solvation = -3737.121062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.90866 -40.49616 -39.18600 -37.75520 -36.20950 -34.00570 -33.11961 -31.81562 -30.06449 -29.03738 -27.81727 -25.71929 -23.70382 -23.37597 -21.52368 -21.18517 -20.43153 -18.41584 -17.88477 -16.94412 -16.34024 -15.98067 -15.89904 -15.53029 -15.48387 -15.20365 -14.70123 -14.30884 -14.07112 -13.64284 -13.34635 -13.05430 -12.79157 -12.47844 -12.31923 -12.07087 -11.99116 -11.62116 -11.60185 -11.40477 -11.24559 -11.12845 -10.86604 -10.69209 -10.50224 -10.06547 -9.44510 -9.07546 -8.71902 -7.98301 -7.75346 -7.66756 -6.55219 -4.60640 0.52732 1.09435 2.30678 2.66492 2.76667 2.88893 3.05686 3.08297 3.13340 3.65591 3.89246 4.15296 4.63216 4.64206 4.77012 5.03159 5.08184 5.18788 5.56536 5.65998 5.75966 5.79931 5.92357 5.97604 6.02357 6.16017 6.26761 6.30001 6.35006 6.48029 6.60931 6.74756 6.80597 7.03004 7.19350 7.39757 7.52813 7.74965 7.85736 8.14171 8.54930 8.80294 9.99281 10.21836 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.004058 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.629765 B = 6897.955134 C = 8155.281326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C 0.081 3.919 4 F -0.136 7.136 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.531 3.469 8 O -0.507 6.507 9 O -0.513 6.513 10 C -0.048 4.048 11 C -0.001 4.001 12 C -0.006 4.006 13 C -0.299 4.299 14 C 0.127 3.873 15 N -0.484 5.484 16 C 0.257 3.743 17 C -0.430 4.430 18 H 0.085 0.915 19 C 0.072 3.928 20 N -0.716 5.716 21 Si 0.907 3.093 22 H -0.269 1.269 23 H -0.260 1.260 24 H -0.275 1.275 25 C -0.248 4.248 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.414 0.586 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.275 0.725 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 12.744 1.769 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C 0.061 3.939 4 F -0.115 7.115 5 C -0.125 4.125 6 C -0.113 4.113 7 C 0.375 3.625 8 O -0.396 6.396 9 O -0.325 6.325 10 C -0.067 4.067 11 C -0.002 4.002 12 C -0.012 4.012 13 C -0.322 4.322 14 C -0.039 4.039 15 N -0.196 5.196 16 C 0.133 3.867 17 C -0.461 4.461 18 H 0.103 0.897 19 C -0.154 4.154 20 N -0.337 5.337 21 Si 0.731 3.269 22 H -0.194 1.194 23 H -0.184 1.184 24 H -0.199 1.199 25 C -0.271 4.271 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.164 0.836 30 H 0.272 0.728 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.779 11.570 1.775 12.643 hybrid contribution 1.251 0.458 -0.401 1.391 sum 6.030 12.028 1.374 13.524 Atomic orbital electron populations 1.20926 0.89366 1.03904 1.03252 1.20326 0.97822 0.90846 0.98042 1.17210 0.89487 0.81107 1.06054 1.91483 1.80012 1.45787 1.94200 1.21244 0.92182 0.98909 1.00134 1.18623 0.88883 0.93976 1.09820 1.20760 0.88607 0.80952 0.72161 1.90920 1.69667 1.33141 1.45828 1.84551 1.26898 1.35075 1.86006 1.21489 0.93291 0.97456 0.94431 1.18732 0.91844 0.92749 0.96844 1.18355 0.95454 0.90500 0.96857 1.21287 1.04240 1.01025 1.05668 1.22433 0.96394 0.89558 0.95518 1.68646 1.16747 1.29707 1.04530 1.18506 0.87528 0.90233 0.90444 1.19646 1.09951 1.00401 1.16123 0.89675 1.26044 0.94216 0.99714 0.95431 1.70053 1.07607 1.27396 1.28663 0.86319 0.80343 0.80175 0.80085 1.19449 1.18367 1.19948 1.21833 1.06137 0.95582 1.03527 0.90211 0.91605 0.89179 0.83584 0.72787 0.83505 0.88373 0.86152 0.91369 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.29 36.00 0.30 -1.39 16 2 C -0.07 -1.07 5.89 -104.14 -0.61 -1.69 16 3 C 0.08 1.13 7.22 -39.53 -0.29 0.85 16 4 F -0.14 -1.84 16.45 2.25 0.04 -1.81 16 5 C -0.11 -1.36 9.59 -39.04 -0.37 -1.74 16 6 C -0.11 -1.59 5.87 -105.03 -0.62 -2.21 16 7 C 0.53 7.06 8.27 34.62 0.29 7.34 16 8 O -0.51 -8.22 17.13 -19.24 -0.33 -8.55 16 9 O -0.51 -4.80 12.67 -40.51 -0.51 -5.32 16 10 C -0.05 -0.79 9.08 -38.83 -0.35 -1.14 16 11 C 0.00 -0.03 5.51 -104.96 -0.58 -0.60 16 12 C -0.01 -0.11 4.71 -104.64 -0.49 -0.61 16 13 C -0.30 -6.12 8.02 -38.81 -0.31 -6.43 16 14 C 0.13 2.87 11.17 -17.61 -0.20 2.68 16 15 N -0.48 -12.74 7.96 -11.21 -0.09 -12.83 16 16 C 0.26 6.73 6.52 -85.02 -0.55 6.18 16 17 C -0.43 -11.15 9.13 -37.70 -0.34 -11.50 16 18 H 0.09 2.07 7.86 -52.49 -0.41 1.66 16 19 C 0.07 1.78 5.47 -17.34 -0.09 1.68 16 20 N -0.72 -18.52 11.57 55.55 0.64 -17.88 16 21 Si 0.91 18.15 29.57 -169.99 -5.03 13.13 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.25 -5.75 9.36 -38.35 -0.36 -6.11 16 26 H 0.08 1.05 7.52 -51.92 -0.39 0.66 16 27 H 0.07 0.83 7.63 -51.93 -0.40 0.44 16 28 H 0.09 1.46 6.44 -51.93 -0.33 1.13 16 29 H 0.15 1.55 7.60 -52.49 -0.40 1.15 16 30 H 0.41 1.90 9.11 45.56 0.42 2.32 16 31 H 0.15 2.52 7.64 -52.49 -0.40 2.12 16 32 H 0.10 1.76 6.92 -52.49 -0.36 1.40 16 33 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.28 6.43 8.29 -40.82 -0.34 6.10 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -29.66 315.89 -7.37 -37.03 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -2.26 Total: 6.15 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -4.59 Total: -14.69 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.55 Total: -30.71 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.84 Total: -13.86 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.66 -7.37 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242211213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.612 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds