Wall clock time and date at job start Fri Apr 10 2020 20:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48503 * 109.46903 * 272.58256 * 3 2 1 5 5 H 1.48498 * 109.47568 * 32.58394 * 3 2 1 6 6 H 1.48499 * 109.47322 * 152.58445 * 3 2 1 7 7 C 1.39933 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00261 * 347.81075 * 7 2 1 9 9 C 1.41411 * 119.99547 * 167.81058 * 7 2 1 10 10 C 1.40772 * 120.21231 * 328.84088 * 9 7 2 11 11 C 1.37648 * 119.89126 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32208 * 359.73870 * 11 10 9 13 13 C 1.39272 * 120.42745 * 0.51948 * 12 11 10 14 14 N 1.39847 * 119.95151 * 179.76224 * 13 12 11 15 15 C 1.34767 * 120.00069 * 215.05737 * 14 13 12 16 16 O 1.21642 * 119.99936 * 355.59053 * 15 14 13 17 17 C 1.47177 * 120.00174 * 175.58294 * 15 14 13 18 18 C 1.37034 * 126.64228 * 179.97438 * 17 15 14 19 19 C 1.40951 * 105.45989 * 179.97438 * 18 17 15 20 20 C 1.47634 * 126.27522 * 179.97438 * 19 18 17 21 21 O 1.21485 * 119.99852 * 359.97438 * 20 19 18 22 22 O 1.34719 * 120.00065 * 180.02562 * 20 19 18 23 23 N 1.32002 * 107.45201 * 0.02562 * 19 18 17 24 24 N 1.28457 * 110.48613 * 359.75179 * 23 19 18 25 25 H 0.96999 * 125.05755 * 180.25301 * 24 23 19 26 26 C 1.38299 * 120.09647 * 359.48236 * 13 12 11 27 27 H 0.97005 * 119.99846 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.05584 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.83941 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.78500 * 180.25229 * 12 11 10 31 31 H 0.96997 * 119.99844 * 35.33041 * 14 13 12 32 32 H 1.07998 * 127.27273 * 359.95021 * 18 17 15 33 33 H 0.96698 * 117.00064 * 179.97438 * 22 20 19 34 34 H 1.08004 * 120.16155 * 180.23315 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4351 2.0779 -1.3987 5 1 1.4682 2.6363 0.7540 6 1 3.5661 1.4251 0.6446 7 6 2.0079 -1.2119 0.0005 8 1 1.4862 -2.1366 0.1984 9 6 3.3981 -1.2257 -0.2580 10 6 3.9692 -0.2643 -1.1131 11 6 5.3231 -0.2843 -1.3607 12 6 6.1284 -1.2430 -0.7680 13 6 5.5767 -2.2038 0.0760 14 7 6.3981 -3.1701 0.6651 15 6 5.9347 -4.4205 0.8600 16 8 4.7773 -4.6879 0.5978 17 6 6.8288 -5.4626 1.3898 18 6 6.5033 -6.7700 1.6396 19 6 7.6829 -7.3633 2.1328 20 6 7.8449 -8.7705 2.5489 21 8 6.9039 -9.5360 2.4816 22 8 9.0358 -9.2055 3.0042 23 7 8.6159 -6.4299 2.1554 24 7 8.1469 -5.3147 1.7235 25 1 8.6518 -4.4901 1.6471 26 6 4.2185 -2.2000 0.3369 27 1 -0.4850 0.8401 -0.0004 28 1 3.3460 0.4872 -1.5749 29 1 5.7603 0.4535 -2.0172 30 1 7.1903 -1.2481 -0.9650 31 1 7.3001 -2.9393 0.9372 32 1 5.5450 -7.2454 1.4906 33 1 9.0932 -10.1348 3.2653 34 1 3.7901 -2.9423 0.9942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:54 Heat of formation + Delta-G solvation = -22.175622 kcal Electronic energy + Delta-G solvation = -22616.839102 eV Core-core repulsion = 18902.433435 eV Total energy + Delta-G solvation = -3714.405668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.12471 -40.21003 -39.82978 -37.54854 -36.39473 -34.84369 -33.37513 -32.44185 -31.55679 -30.41266 -28.78616 -25.49881 -25.34187 -24.19187 -21.74942 -21.17836 -21.03139 -20.47402 -19.01536 -18.31791 -17.84906 -17.08820 -16.55978 -16.13299 -15.70049 -15.58899 -15.44203 -14.69025 -14.62903 -14.14876 -14.02119 -13.66710 -13.51990 -12.81046 -12.66682 -12.13445 -11.90421 -11.68785 -11.64502 -11.24174 -11.20918 -11.18981 -10.69159 -10.07654 -10.03129 -9.89616 -9.77361 -9.63828 -9.45819 -9.14950 -7.76497 -7.34336 -6.95349 -4.54680 0.77586 1.09184 2.07959 2.34953 2.53044 2.63598 2.74811 3.06555 3.08337 3.18970 3.19852 3.28582 3.94385 3.98242 4.37270 4.45385 4.88268 5.01851 5.29295 5.34236 5.84578 5.86857 6.04707 6.06858 6.18816 6.25943 6.42478 6.59560 6.69641 7.05107 7.10424 7.18617 7.37923 7.48582 7.59449 7.73179 7.82370 7.87301 8.22833 8.33622 8.57481 8.75338 10.07016 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.030949 B = 0.002990 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.484137 B = 9363.029231 C =10034.142479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.080 3.920 3 Si 0.917 3.083 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.438 4.438 8 H 0.093 0.907 9 C 0.102 3.898 10 C -0.245 4.245 11 C -0.064 4.064 12 C -0.262 4.262 13 C 0.155 3.845 14 N -0.661 5.661 15 C 0.579 3.421 16 O -0.483 6.483 17 C -0.025 4.025 18 C -0.090 4.090 19 C -0.014 4.014 20 C 0.577 3.423 21 O -0.500 6.500 22 O -0.502 6.502 23 N -0.201 5.201 24 N -0.359 5.359 25 H 0.452 0.548 26 C -0.193 4.193 27 H 0.286 0.714 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.395 0.605 32 H 0.182 0.818 33 H 0.417 0.583 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.422 -8.258 4.370 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.467 4.467 8 H 0.111 0.889 9 C 0.098 3.902 10 C -0.265 4.265 11 C -0.082 4.082 12 C -0.283 4.283 13 C 0.063 3.937 14 N -0.305 5.305 15 C 0.363 3.637 16 O -0.353 6.353 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.170 4.170 20 C 0.418 3.582 21 O -0.385 6.385 22 O -0.312 6.312 23 N -0.043 5.043 24 N -0.081 5.081 25 H 0.298 0.702 26 C -0.214 4.214 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.229 0.771 32 H 0.199 0.801 33 H 0.276 0.724 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.022 -8.097 4.323 19.338 hybrid contribution 0.301 0.632 -0.010 0.700 sum 17.323 -7.465 4.313 19.349 Atomic orbital electron populations 1.69661 1.08016 1.30263 1.35449 1.26194 0.94865 1.01729 0.91051 0.86247 0.80900 0.79487 0.78899 1.19700 1.22110 1.16645 1.19547 0.91093 0.95713 1.40344 0.88867 1.17634 0.93338 0.90240 0.88991 1.21082 0.94891 1.04737 1.05776 1.20366 0.93573 0.96686 0.97624 1.20025 0.98127 1.02474 1.07676 1.17440 0.90585 0.89695 0.95937 1.43212 1.16905 1.09444 1.60952 1.16891 0.86651 0.81046 0.79091 1.90957 1.15719 1.80268 1.48405 1.21643 0.85887 0.97459 1.10068 1.21889 0.99676 0.90997 0.99271 1.20540 0.92612 0.92349 1.11491 1.19093 0.80158 0.85590 0.73340 1.90962 1.40940 1.55416 1.51207 1.84621 1.34977 1.35306 1.76337 1.73671 1.25168 0.92041 1.13381 1.43876 1.08460 1.10645 1.45074 0.70165 1.21184 0.90980 1.03970 1.05288 0.90375 0.88031 0.88292 0.88572 0.77110 0.80074 0.72449 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 13.93 55.55 0.77 -20.86 16 2 C 0.08 2.09 5.47 -17.34 -0.09 2.00 16 3 Si 0.92 20.49 24.40 -169.99 -4.15 16.34 16 4 H -0.27 -5.83 6.67 56.52 0.38 -5.46 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.24 -5.47 6.66 56.52 0.38 -5.10 16 7 C -0.44 -11.94 9.60 -37.74 -0.36 -12.31 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.10 2.56 5.13 -106.85 -0.55 2.02 16 10 C -0.25 -5.73 6.99 -38.84 -0.27 -6.00 16 11 C -0.06 -1.29 10.02 -39.69 -0.40 -1.69 16 12 C -0.26 -4.89 9.97 -39.09 -0.39 -5.28 16 13 C 0.15 3.03 6.29 -83.79 -0.53 2.50 16 14 N -0.66 -9.61 5.33 -10.95 -0.06 -9.67 16 15 C 0.58 9.00 7.64 -12.64 -0.10 8.90 16 16 O -0.48 -9.74 14.35 5.24 0.08 -9.66 16 17 C -0.02 -0.30 7.10 -82.48 -0.59 -0.88 16 18 C -0.09 -1.13 10.55 -38.99 -0.41 -1.54 16 19 C -0.01 -0.16 7.13 -82.93 -0.59 -0.75 16 20 C 0.58 6.31 8.34 34.57 0.29 6.60 16 21 O -0.50 -6.63 17.70 -19.25 -0.34 -6.97 16 22 O -0.50 -3.93 13.44 -40.54 -0.54 -4.47 16 23 N -0.20 -2.13 12.22 33.32 0.41 -1.72 16 24 N -0.36 -3.20 6.84 33.26 0.23 -2.97 16 25 H 0.45 2.27 8.20 -190.45 -1.56 0.71 16 26 C -0.19 -4.52 8.43 -38.68 -0.33 -4.84 16 27 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 28 H 0.10 2.36 4.40 -52.48 -0.23 2.13 16 29 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.10 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.40 3.84 7.99 -40.82 -0.33 3.51 16 32 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.42 1.12 9.11 45.56 0.42 1.53 16 34 H 0.12 2.93 6.23 -52.48 -0.33 2.60 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -33.45 307.74 -6.19 -39.64 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -2.91 Total: 6.98 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -4.31 Total: -11.27 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 1.35 Total: -35.23 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.81 Total: -21.11 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.15 Total: 16.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.45 -6.19 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.464 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds