Wall clock time and date at job start Fri Apr 10 2020 20:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00416 * 2 1 4 4 C 1.50696 * 109.47021 * 270.00130 * 3 2 1 5 5 H 1.08001 * 120.00463 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99537 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00216 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99858 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47225 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47076 * 120.00097 * 8 6 4 11 11 H 1.48497 * 109.47374 * 240.00415 * 8 6 4 12 12 C 1.34783 * 119.99681 * 179.97438 * 2 1 3 13 13 O 1.21735 * 119.99865 * 180.60677 * 12 2 1 14 14 C 1.46309 * 120.00052 * 0.60987 * 12 2 1 15 15 S 1.75796 * 125.49139 * 349.46199 * 14 12 2 16 16 C 1.70535 * 91.75967 * 180.02562 * 15 14 12 17 17 C 1.33394 * 111.34075 * 0.02562 * 16 15 14 18 18 C 1.37861 * 125.48685 * 169.50723 * 14 12 2 19 19 C 1.48145 * 123.59326 * 359.97438 * 18 14 12 20 20 C 1.39457 * 120.13363 * 309.72961 * 19 18 14 21 21 C 1.37992 * 119.86735 * 179.69656 * 20 19 18 22 22 C 1.38348 * 120.13024 * 0.57633 * 21 20 19 23 23 C 1.38348 * 120.26524 * 359.71921 * 22 21 20 24 24 C 1.37982 * 120.13603 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47601 * 263.61124 * 1 2 3 26 26 H 1.09002 * 109.46783 * 23.61352 * 1 2 3 27 27 H 1.09001 * 109.46983 * 143.60683 * 1 2 3 28 28 H 1.09000 * 109.46453 * 29.99728 * 3 2 1 29 29 H 1.08993 * 109.46951 * 149.99712 * 3 2 1 30 30 H 0.96998 * 119.99762 * 179.97438 * 7 6 4 31 31 H 1.08006 * 124.32858 * 179.73163 * 16 15 14 32 32 H 1.07996 * 122.47300 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.06908 * 359.97438 * 20 19 18 34 34 H 1.07997 * 119.93499 * 180.31880 * 21 20 19 35 35 H 1.07998 * 119.86708 * 179.69743 * 22 21 20 36 36 H 1.08003 * 119.93014 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.06720 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1262 2.8779 -1.6726 7 7 3.5535 3.6179 -0.6730 8 14 3.4382 3.4168 -3.4338 9 1 2.8610 2.4164 -4.3673 10 1 2.8001 4.7373 -3.6678 11 1 4.9007 3.5255 -3.6665 12 6 2.1388 -1.1673 0.0005 13 8 3.3561 -1.1674 0.0117 14 6 1.4073 -2.4343 -0.0124 15 16 -0.3240 -2.6158 0.2325 16 6 -0.2252 -4.3087 0.0528 17 6 1.0294 -4.7003 -0.1751 18 6 1.9649 -3.6783 -0.2178 19 6 3.4099 -3.8993 -0.4581 20 6 4.0797 -3.1564 -1.4298 21 6 5.4271 -3.3623 -1.6447 22 6 6.1109 -4.3120 -0.9068 23 6 5.4504 -5.0565 0.0543 24 6 4.1046 -4.8552 0.2827 25 1 -0.3634 -0.1143 1.0213 26 1 -0.3633 0.9417 -0.4117 27 1 -0.3633 -0.8272 -0.6097 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0304 4.4438 -0.8503 31 1 -1.0697 -4.9787 0.1199 32 1 1.2966 -5.7370 -0.3169 33 1 3.5459 -2.4181 -2.0098 34 1 5.9480 -2.7839 -2.3933 35 1 7.1643 -4.4732 -1.0819 36 1 5.9896 -5.7962 0.6275 37 1 3.5903 -5.4366 1.0335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060657621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:55 Heat of formation + Delta-G solvation = 33.043123 kcal Electronic energy + Delta-G solvation = -21726.245155 eV Core-core repulsion = 18560.527166 eV Total energy + Delta-G solvation = -3165.717989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65950 -38.45034 -37.00846 -34.85439 -32.68975 -31.24828 -30.59871 -29.39581 -27.61328 -26.10425 -24.73696 -22.92140 -22.17506 -21.70452 -20.08082 -18.47363 -17.40723 -16.62992 -16.48550 -15.56730 -15.39572 -14.88757 -14.79315 -14.44815 -14.25996 -14.02081 -13.13405 -13.03434 -12.87707 -12.76068 -12.54415 -12.43858 -12.27034 -12.09770 -11.86521 -11.29641 -10.96714 -10.94862 -10.74723 -10.65976 -10.35691 -10.14053 -9.66707 -9.24903 -8.90347 -8.54937 -8.47686 -8.46320 -7.92767 -7.64877 -6.07367 -4.12365 0.64004 1.59139 1.66965 1.79053 2.10803 2.64850 3.27909 3.35707 3.39341 3.76758 3.92525 4.17002 4.42425 4.85101 5.02760 5.18108 5.24094 5.27904 5.30855 5.39064 5.44954 5.49538 5.72713 5.77390 5.85445 5.96827 6.07041 6.23045 6.25887 6.35871 6.43285 6.75371 6.85528 6.94314 7.01981 7.31013 7.38995 7.46115 7.88644 8.18516 8.29205 8.85055 9.00729 9.52853 11.00711 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.005750 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.151669 B = 4868.776788 C = 6480.625084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.595 5.595 3 C 0.247 3.753 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.570 3.430 13 O -0.514 6.514 14 C -0.241 4.241 15 S 0.227 5.773 16 C -0.275 4.275 17 C -0.133 4.133 18 C -0.005 4.005 19 C -0.027 4.027 20 C -0.050 4.050 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.105 4.105 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -16.367 1.627 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.326 5.326 3 C 0.128 3.872 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.356 3.644 13 O -0.391 6.391 14 C -0.362 4.362 15 S 0.497 5.503 16 C -0.411 4.411 17 C -0.163 4.163 18 C -0.020 4.020 19 C -0.029 4.029 20 C -0.068 4.068 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.151 4.151 24 C -0.124 4.124 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.178 0.822 32 H 0.155 0.845 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.902 -15.182 1.975 16.794 hybrid contribution 1.130 -0.676 -1.191 1.776 sum -5.772 -15.859 0.784 16.895 Atomic orbital electron populations 1.21875 0.82066 1.02995 1.00866 1.48076 1.05795 1.07801 1.70954 1.19360 0.92623 0.77430 0.97741 1.21445 1.36654 1.06285 0.92153 0.92361 1.24925 0.95295 0.96350 0.97427 1.69939 1.38296 1.14335 1.30675 0.86455 0.78134 0.78349 0.84573 1.19779 1.20930 1.20825 1.16850 0.87088 0.81888 0.78586 1.90856 1.12173 1.86168 1.49950 1.25132 0.97195 0.98274 1.15566 1.83569 1.03522 0.97278 1.65926 1.25600 1.01549 1.04283 1.09715 1.19863 0.91583 1.00065 1.04838 1.18210 0.93640 0.90730 0.99396 1.18194 0.90530 0.97061 0.97133 1.21136 0.94350 0.95421 0.95905 1.21039 0.94377 0.98160 1.00392 1.21127 0.99438 0.96521 0.96471 1.20897 0.94405 1.00715 0.99106 1.21033 0.94445 0.97783 0.99110 0.92752 0.88867 0.91928 0.94724 0.93470 0.92715 0.82176 0.84541 0.86151 0.86146 0.86556 0.86465 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.92 59.85 0.53 1.63 16 2 N -0.59 -12.81 2.86 -184.65 -0.53 -13.34 16 3 C 0.25 6.41 5.14 -5.20 -0.03 6.39 16 4 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.57 12.43 7.25 -13.01 -0.09 12.33 16 13 O -0.51 -12.95 12.91 5.16 0.07 -12.88 16 14 C -0.24 -4.23 6.20 -36.48 -0.23 -4.46 16 15 S 0.23 2.88 17.91 -107.50 -1.93 0.96 16 16 C -0.28 -3.16 10.88 29.04 0.32 -2.84 16 17 C -0.13 -1.73 9.85 -41.14 -0.41 -2.14 16 18 C 0.00 -0.08 5.44 -105.83 -0.58 -0.65 16 19 C -0.03 -0.46 4.93 -104.92 -0.52 -0.98 16 20 C -0.05 -0.91 7.30 -39.22 -0.29 -1.20 16 21 C -0.12 -1.99 10.03 -39.63 -0.40 -2.39 16 22 C -0.12 -1.67 10.04 -39.50 -0.40 -2.07 16 23 C -0.13 -1.81 10.03 -39.63 -0.40 -2.21 16 24 C -0.11 -1.55 9.64 -39.22 -0.38 -1.93 16 25 H 0.05 0.74 7.75 -51.93 -0.40 0.34 16 26 H 0.09 1.48 8.02 -51.93 -0.42 1.06 16 27 H 0.06 0.90 4.65 -23.67 -0.11 0.79 16 28 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 2.41 7.42 -52.49 -0.39 2.02 16 34 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -32.72 326.13 -9.23 -41.96 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.20 Total: 1.24 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.27 Total: -13.92 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.21 Total: -38.92 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.93 Total: 0.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.72 -9.23 -41.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060657621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.001 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds