Wall clock time and date at job start Fri Apr 10 2020 20:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00416 * 2 1 4 4 C 1.50696 * 109.47021 * 270.00130 * 3 2 1 5 5 H 1.08001 * 120.00463 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99537 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00216 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99858 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47225 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47076 * 120.00097 * 8 6 4 11 11 H 1.48497 * 109.47374 * 240.00415 * 8 6 4 12 12 C 1.34783 * 119.99681 * 179.97438 * 2 1 3 13 13 O 1.21735 * 119.99865 * 180.60677 * 12 2 1 14 14 C 1.46309 * 120.00052 * 0.60987 * 12 2 1 15 15 S 1.75796 * 125.49139 * 349.46199 * 14 12 2 16 16 C 1.70535 * 91.75967 * 180.02562 * 15 14 12 17 17 C 1.33394 * 111.34075 * 0.02562 * 16 15 14 18 18 C 1.37861 * 125.48685 * 169.50723 * 14 12 2 19 19 C 1.48145 * 123.59326 * 359.97438 * 18 14 12 20 20 C 1.39457 * 120.13363 * 309.72961 * 19 18 14 21 21 C 1.37992 * 119.86735 * 179.69656 * 20 19 18 22 22 C 1.38348 * 120.13024 * 0.57633 * 21 20 19 23 23 C 1.38348 * 120.26524 * 359.71921 * 22 21 20 24 24 C 1.37982 * 120.13603 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47601 * 263.61124 * 1 2 3 26 26 H 1.09002 * 109.46783 * 23.61352 * 1 2 3 27 27 H 1.09001 * 109.46983 * 143.60683 * 1 2 3 28 28 H 1.09000 * 109.46453 * 29.99728 * 3 2 1 29 29 H 1.08993 * 109.46951 * 149.99712 * 3 2 1 30 30 H 0.96998 * 119.99762 * 179.97438 * 7 6 4 31 31 H 1.08006 * 124.32858 * 179.73163 * 16 15 14 32 32 H 1.07996 * 122.47300 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.06908 * 359.97438 * 20 19 18 34 34 H 1.07997 * 119.93499 * 180.31880 * 21 20 19 35 35 H 1.07998 * 119.86708 * 179.69743 * 22 21 20 36 36 H 1.08003 * 119.93014 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.06720 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1262 2.8779 -1.6726 7 7 3.5535 3.6179 -0.6730 8 14 3.4382 3.4168 -3.4338 9 1 2.8610 2.4164 -4.3673 10 1 2.8001 4.7373 -3.6678 11 1 4.9007 3.5255 -3.6665 12 6 2.1388 -1.1673 0.0005 13 8 3.3561 -1.1674 0.0117 14 6 1.4073 -2.4343 -0.0124 15 16 -0.3240 -2.6158 0.2325 16 6 -0.2252 -4.3087 0.0528 17 6 1.0294 -4.7003 -0.1751 18 6 1.9649 -3.6783 -0.2178 19 6 3.4099 -3.8993 -0.4581 20 6 4.0797 -3.1564 -1.4298 21 6 5.4271 -3.3623 -1.6447 22 6 6.1109 -4.3120 -0.9068 23 6 5.4504 -5.0565 0.0543 24 6 4.1046 -4.8552 0.2827 25 1 -0.3634 -0.1143 1.0213 26 1 -0.3633 0.9417 -0.4117 27 1 -0.3633 -0.8272 -0.6097 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0304 4.4438 -0.8503 31 1 -1.0697 -4.9787 0.1199 32 1 1.2966 -5.7370 -0.3169 33 1 3.5459 -2.4181 -2.0098 34 1 5.9480 -2.7839 -2.3933 35 1 7.1643 -4.4732 -1.0819 36 1 5.9896 -5.7962 0.6275 37 1 3.5903 -5.4366 1.0335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060657621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:55 Heat of formation + Delta-G solvation = 13.815957 kcal Electronic energy + Delta-G solvation = -21727.078908 eV Core-core repulsion = 18560.527166 eV Total energy + Delta-G solvation = -3166.551741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04140 -39.86937 -38.15379 -36.60254 -34.79978 -32.39352 -31.79222 -30.95321 -29.24631 -27.63266 -26.18442 -24.66634 -23.37615 -22.83556 -21.58165 -19.64576 -18.89401 -18.70697 -17.80551 -17.03784 -16.72561 -16.56545 -16.27373 -15.73023 -15.66035 -15.34207 -14.50075 -14.37294 -14.25857 -14.10892 -13.97932 -13.81812 -13.67037 -13.49835 -13.37651 -12.99046 -12.88199 -12.62533 -12.26706 -12.10665 -11.93605 -11.72888 -11.41214 -10.84164 -10.67209 -10.13167 -9.77542 -9.60745 -9.49272 -8.97090 -8.25117 -6.39846 -0.55655 0.44990 0.54477 0.58542 1.06992 1.33856 1.36277 1.47703 1.51539 2.16663 2.36190 2.40058 2.96406 3.04524 3.68212 3.79286 4.06199 4.12440 4.14617 4.28182 4.35633 4.37780 4.47511 4.63635 4.70149 4.76419 4.89782 4.95569 5.11518 5.15644 5.18340 5.26921 5.33712 5.49793 5.59611 5.64722 5.74085 5.77861 6.01996 6.14350 6.61750 6.69126 7.23334 7.38801 8.82208 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.005750 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.151669 B = 4868.776788 C = 6480.625084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.606 5.606 3 C 0.264 3.736 4 C -0.541 4.541 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.563 3.437 13 O -0.566 6.566 14 C -0.300 4.300 15 S 0.283 5.717 16 C -0.245 4.245 17 C -0.147 4.147 18 C -0.003 4.003 19 C -0.048 4.048 20 C -0.079 4.079 21 C -0.143 4.143 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.108 4.108 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.268 0.732 31 H 0.204 0.796 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 -19.090 1.681 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.337 5.337 3 C 0.143 3.857 4 C -0.579 4.579 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.191 1.191 11 H -0.207 1.207 12 C 0.352 3.648 13 O -0.448 6.448 14 C -0.420 4.420 15 S 0.553 5.447 16 C -0.381 4.381 17 C -0.176 4.176 18 C -0.019 4.019 19 C -0.050 4.050 20 C -0.098 4.098 21 C -0.161 4.161 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.126 4.126 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.221 0.779 32 H 0.180 0.820 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.711 -17.908 2.033 20.018 hybrid contribution 1.637 0.060 -1.154 2.004 sum -7.074 -17.848 0.879 19.219 Atomic orbital electron populations 1.22154 0.78742 1.04073 1.03147 1.48035 1.07932 1.06408 1.71303 1.18802 0.91120 0.79493 0.96274 1.21660 1.37026 1.06483 0.92772 0.93197 1.25812 0.94795 0.96333 1.01875 1.70049 1.38828 1.14823 1.32910 0.85399 0.77941 0.78477 0.79187 1.19378 1.19104 1.20699 1.17469 0.86911 0.83230 0.77229 1.90799 1.14615 1.87232 1.52140 1.24773 1.00620 0.96427 1.20164 1.83123 0.98811 0.98236 1.64504 1.26101 1.02222 1.03957 1.05846 1.20007 0.91370 1.00451 1.05820 1.18557 0.93980 0.91340 0.98052 1.18480 0.91613 0.97664 0.97270 1.20999 0.95361 0.96039 0.97419 1.21222 0.93983 0.99427 1.01443 1.21486 1.00840 0.95421 0.95829 1.21385 0.94160 1.00579 0.98394 1.21395 0.95141 0.97120 0.98942 0.89886 0.88845 0.89917 0.95194 0.98148 0.92313 0.77856 0.81990 0.89888 0.86158 0.83535 0.82603 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.01 8.92 127.77 1.14 3.15 16 2 N -0.61 -27.46 2.86 -856.30 -2.45 -29.91 16 3 C 0.26 14.63 5.14 85.63 0.44 15.07 16 4 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.64 5.46 84.66 0.46 1.11 16 7 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 8 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 C 0.56 26.07 7.25 86.34 0.63 26.69 16 13 O -0.57 -31.09 12.91 -4.46 -0.06 -31.15 16 14 C -0.30 -10.64 6.20 24.28 0.15 -10.49 16 15 S 0.28 6.41 17.91 -56.49 -1.01 5.40 16 16 C -0.24 -4.50 10.88 66.72 0.73 -3.77 16 17 C -0.15 -3.38 9.85 21.26 0.21 -3.17 16 18 C 0.00 -0.09 5.44 -20.65 -0.11 -0.20 16 19 C -0.05 -1.69 4.93 -20.06 -0.10 -1.79 16 20 C -0.08 -3.14 7.30 22.51 0.16 -2.98 16 21 C -0.14 -4.94 10.03 22.24 0.22 -4.72 16 22 C -0.12 -3.26 10.04 22.32 0.22 -3.03 16 23 C -0.13 -3.20 10.03 22.24 0.22 -2.97 16 24 C -0.11 -3.02 9.64 22.50 0.22 -2.81 16 25 H 0.08 2.16 7.75 -2.39 -0.02 2.14 16 26 H 0.09 2.96 8.02 -2.39 -0.02 2.94 16 27 H 0.08 2.29 4.65 -20.35 -0.09 2.19 16 28 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 29 H 0.00 0.03 7.41 -2.39 -0.02 0.01 16 30 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.08 3.77 7.42 -2.91 -0.02 3.75 16 34 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -77.92 326.13 4.63 -73.30 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.00 Total: 12.47 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.83 Total: -21.48 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.16 Total: -86.11 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.06 Total: -31.15 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -1.01 Total: 5.40 kcal Total: -77.92 4.63 -73.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060657621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.112 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds