Wall clock time and date at job start Fri Apr 10 2020 20:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46902 * 2 1 4 4 C 1.37454 * 123.35651 * 265.01765 * 3 2 1 5 5 C 1.33835 * 115.10843 * 179.97438 * 4 3 2 6 6 S 1.70622 * 110.95646 * 359.76257 * 5 4 3 7 7 C 1.36701 * 123.35778 * 85.00602 * 3 2 1 8 8 C 1.46523 * 125.45551 * 359.97355 * 7 3 2 9 9 O 1.21715 * 120.00613 * 0.02562 * 8 7 3 10 10 N 1.34782 * 120.00029 * 180.02562 * 8 7 3 11 11 C 1.39093 * 120.00278 * 184.28919 * 10 8 7 12 12 C 1.39518 * 119.83688 * 144.40929 * 11 10 8 13 13 C 1.36363 * 120.16287 * 179.76039 * 12 11 10 14 14 C 1.40879 * 119.82870 * 0.50958 * 13 12 11 15 15 C 1.41134 * 120.15824 * 179.72044 * 14 13 12 16 16 H 1.08001 * 120.00035 * 214.80872 * 15 14 13 17 17 C 1.39901 * 120.00298 * 34.80541 * 15 14 13 18 18 N 1.30883 * 119.99802 * 355.56630 * 17 15 14 19 19 Si 1.86802 * 120.00333 * 175.56187 * 17 15 14 20 20 H 1.48497 * 109.47005 * 90.00335 * 19 17 15 21 21 H 1.48505 * 109.46728 * 210.00082 * 19 17 15 22 22 H 1.48493 * 109.47219 * 330.00113 * 19 17 15 23 23 C 1.40882 * 119.68358 * 359.74327 * 14 13 12 24 24 C 1.36359 * 119.82920 * 359.97438 * 23 14 13 25 25 H 1.09003 * 109.47678 * 299.99913 * 1 2 3 26 26 H 1.08999 * 109.47375 * 60.00121 * 1 2 3 27 27 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47015 * 239.99734 * 2 1 3 29 29 H 1.09001 * 109.46478 * 119.99802 * 2 1 3 30 30 H 1.08004 * 122.44501 * 359.96423 * 4 3 2 31 31 H 1.07992 * 124.52274 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99397 * 4.55461 * 10 8 7 33 33 H 1.08000 * 119.92061 * 359.97438 * 12 11 10 34 34 H 1.07999 * 120.07992 * 180.25885 * 13 12 11 35 35 H 0.96993 * 120.00247 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.08807 * 179.97438 * 23 14 13 37 37 H 1.07996 * 119.91835 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1001 -1.1438 5 6 2.8034 3.3546 -0.9525 6 16 2.7855 3.7591 0.7050 7 6 2.1891 2.1626 1.1375 8 6 1.8999 1.7031 2.4984 9 8 1.4837 0.5746 2.6843 10 7 2.0949 2.5303 3.5446 11 6 1.9061 2.0667 4.8423 12 6 2.7294 2.5267 5.8704 13 6 2.5471 2.0803 7.1460 14 6 1.5311 1.1443 7.4223 15 6 1.3401 0.6732 8.7390 16 1 1.0292 -0.3473 8.9076 17 6 1.5535 1.5280 9.8257 18 7 2.0134 2.7371 9.6267 19 14 1.1820 0.9438 11.5607 20 1 2.3938 0.3103 12.1398 21 1 0.7812 2.1030 12.3980 22 1 0.0757 -0.0460 11.5234 23 6 0.7071 0.6803 6.3781 24 6 0.8975 1.1400 5.1085 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.3118 1.6540 -2.1251 31 1 3.1123 4.0232 -1.7423 32 1 2.3631 3.4499 3.3923 33 1 3.5109 3.2406 5.6562 34 1 3.1825 2.4405 7.9415 35 1 2.1610 3.3299 10.3801 36 1 -0.0734 -0.0375 6.5825 37 1 0.2669 0.7851 4.3069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064708021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:59 Heat of formation + Delta-G solvation = 10.912326 kcal Electronic energy + Delta-G solvation = -20994.628602 eV Core-core repulsion = 17827.950949 eV Total energy + Delta-G solvation = -3166.677652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91639 -38.31535 -36.99757 -34.47092 -32.99244 -32.67597 -29.94901 -29.52995 -28.47742 -25.73106 -24.55332 -22.40255 -22.00969 -21.11606 -20.15034 -18.67365 -18.03875 -17.29382 -16.38962 -15.74806 -15.18068 -15.14734 -14.81773 -14.06953 -13.93105 -13.69383 -13.58008 -13.13473 -12.82687 -12.68646 -12.38882 -12.15089 -11.91946 -11.73758 -11.52498 -11.37990 -11.16678 -11.05275 -10.91455 -10.70654 -10.51699 -10.06592 -9.84576 -9.33207 -9.17157 -8.87593 -8.75190 -8.54269 -7.55672 -6.89187 -6.63322 -4.34628 0.48698 1.42127 1.80995 2.31388 2.69105 3.07958 3.09417 3.11445 3.16589 3.55057 3.70485 3.97479 4.68966 4.72154 4.98934 5.10297 5.19664 5.36965 5.51372 5.64593 5.66854 5.76868 5.94944 6.08012 6.18902 6.24075 6.38309 6.43313 6.53993 6.73070 6.91258 7.05823 7.19272 7.28429 7.63459 7.72081 7.85190 8.05735 8.22401 8.30412 8.60083 8.69506 8.91923 8.98735 10.27919 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.003201 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.744477 B = 8744.240580 C = 9505.014906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.027 4.027 4 C -0.144 4.144 5 C -0.236 4.236 6 S 0.187 5.813 7 C -0.255 4.255 8 C 0.573 3.427 9 O -0.514 6.514 10 N -0.645 5.645 11 C 0.002 3.998 12 C -0.119 4.119 13 C -0.141 4.141 14 C 0.102 3.898 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.812 5.812 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.083 4.083 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.166 0.834 32 H 0.392 0.608 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.278 0.722 36 H 0.096 0.904 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 3.084 -17.061 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.042 4.042 4 C -0.175 4.175 5 C -0.373 4.373 6 S 0.455 5.545 7 C -0.375 4.375 8 C 0.360 3.640 9 O -0.392 6.392 10 N -0.287 5.287 11 C -0.090 4.090 12 C -0.139 4.139 13 C -0.161 4.161 14 C 0.099 3.901 15 C -0.491 4.491 16 H 0.094 0.906 17 C -0.145 4.145 18 N -0.439 5.439 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.226 4.226 24 C -0.103 4.103 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.226 0.774 33 H 0.109 0.891 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.810 3.843 -15.974 16.529 hybrid contribution -0.284 -0.682 -0.327 0.808 sum 1.526 3.160 -16.300 16.674 Atomic orbital electron populations 1.21598 0.94354 1.01738 1.01698 1.20405 0.96507 0.90565 1.03573 1.19521 0.96695 0.97623 0.90354 1.19905 1.03799 0.94233 0.99592 1.25188 1.08955 1.01412 1.01775 1.83021 1.60735 1.11875 0.98841 1.24625 1.15810 0.99112 0.97954 1.16914 0.79311 0.85285 0.82515 1.90774 1.45105 1.18966 1.84359 1.42846 1.67641 1.13021 1.05225 1.17226 1.02647 1.07182 0.81911 1.20342 0.98184 1.01763 0.93588 1.21193 0.99438 1.01169 0.94295 1.17732 0.89058 0.90737 0.92551 1.19510 1.40536 0.98680 0.90383 0.90574 1.25882 0.92819 0.94479 1.01336 1.69764 1.34598 1.06428 1.33142 0.86192 0.79631 0.79091 0.81045 1.19517 1.20308 1.18713 1.20820 1.02251 1.06415 0.93069 1.20409 0.96059 0.97324 0.96459 0.92021 0.93488 0.92382 0.91591 0.88470 0.84024 0.81624 0.77442 0.89083 0.84990 0.91147 0.88534 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.78 37.16 0.36 -1.32 16 2 C -0.07 -0.91 5.50 -27.89 -0.15 -1.07 16 3 C -0.03 -0.36 5.16 -105.47 -0.54 -0.90 16 4 C -0.14 -1.50 9.96 -41.41 -0.41 -1.91 16 5 C -0.24 -2.23 10.92 29.19 0.32 -1.91 16 6 S 0.19 2.03 22.16 -107.50 -2.38 -0.35 16 7 C -0.25 -3.71 6.45 -36.80 -0.24 -3.94 16 8 C 0.57 10.44 7.60 -12.92 -0.10 10.34 16 9 O -0.51 -10.71 11.13 5.17 0.06 -10.66 16 10 N -0.65 -11.91 5.29 -10.96 -0.06 -11.96 16 11 C 0.00 0.05 6.30 -83.61 -0.53 -0.47 16 12 C -0.12 -2.73 9.90 -39.78 -0.39 -3.12 16 13 C -0.14 -3.62 8.61 -39.26 -0.34 -3.96 16 14 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 15 C -0.46 -12.27 9.02 -37.86 -0.34 -12.61 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 17 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 18 N -0.81 -20.88 10.60 55.55 0.59 -20.29 16 19 Si 0.92 18.92 29.56 -169.99 -5.03 13.89 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.21 -5.20 9.74 -39.26 -0.38 -5.58 16 24 C -0.08 -1.98 8.61 -39.78 -0.34 -2.32 16 25 H 0.06 0.91 7.60 -51.93 -0.39 0.51 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.10 1.50 6.33 -51.93 -0.33 1.17 16 30 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 31 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.39 6.04 7.94 -40.82 -0.32 5.72 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 35 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 36 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.11 2.55 6.22 -52.49 -0.33 2.22 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -29.07 325.60 -9.89 -38.96 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.20 Total: 10.48 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -3.78 Total: -24.98 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.53 Total: -32.25 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.38 Total: -0.35 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.07 -9.89 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064708021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.876 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds