Wall clock time and date at job start Fri Apr 10 2020 20:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46902 * 2 1 4 4 C 1.37454 * 123.35651 * 265.01765 * 3 2 1 5 5 C 1.33835 * 115.10843 * 179.97438 * 4 3 2 6 6 S 1.70622 * 110.95646 * 359.76257 * 5 4 3 7 7 C 1.36701 * 123.35778 * 85.00602 * 3 2 1 8 8 C 1.46523 * 125.45551 * 359.97355 * 7 3 2 9 9 O 1.21715 * 120.00613 * 0.02562 * 8 7 3 10 10 N 1.34782 * 120.00029 * 180.02562 * 8 7 3 11 11 C 1.39093 * 120.00278 * 184.28919 * 10 8 7 12 12 C 1.39518 * 119.83688 * 144.40929 * 11 10 8 13 13 C 1.36363 * 120.16287 * 179.76039 * 12 11 10 14 14 C 1.40879 * 119.82870 * 0.50958 * 13 12 11 15 15 C 1.41134 * 120.15824 * 179.72044 * 14 13 12 16 16 H 1.08001 * 120.00035 * 214.80872 * 15 14 13 17 17 C 1.39901 * 120.00298 * 34.80541 * 15 14 13 18 18 N 1.30883 * 119.99802 * 355.56630 * 17 15 14 19 19 Si 1.86802 * 120.00333 * 175.56187 * 17 15 14 20 20 H 1.48497 * 109.47005 * 90.00335 * 19 17 15 21 21 H 1.48505 * 109.46728 * 210.00082 * 19 17 15 22 22 H 1.48493 * 109.47219 * 330.00113 * 19 17 15 23 23 C 1.40882 * 119.68358 * 359.74327 * 14 13 12 24 24 C 1.36359 * 119.82920 * 359.97438 * 23 14 13 25 25 H 1.09003 * 109.47678 * 299.99913 * 1 2 3 26 26 H 1.08999 * 109.47375 * 60.00121 * 1 2 3 27 27 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47015 * 239.99734 * 2 1 3 29 29 H 1.09001 * 109.46478 * 119.99802 * 2 1 3 30 30 H 1.08004 * 122.44501 * 359.96423 * 4 3 2 31 31 H 1.07992 * 124.52274 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99397 * 4.55461 * 10 8 7 33 33 H 1.08000 * 119.92061 * 359.97438 * 12 11 10 34 34 H 1.07999 * 120.07992 * 180.25885 * 13 12 11 35 35 H 0.96993 * 120.00247 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.08807 * 179.97438 * 23 14 13 37 37 H 1.07996 * 119.91835 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1001 -1.1438 5 6 2.8034 3.3546 -0.9525 6 16 2.7855 3.7591 0.7050 7 6 2.1891 2.1626 1.1375 8 6 1.8999 1.7031 2.4984 9 8 1.4837 0.5746 2.6843 10 7 2.0949 2.5303 3.5446 11 6 1.9061 2.0667 4.8423 12 6 2.7294 2.5267 5.8704 13 6 2.5471 2.0803 7.1460 14 6 1.5311 1.1443 7.4223 15 6 1.3401 0.6732 8.7390 16 1 1.0292 -0.3473 8.9076 17 6 1.5535 1.5280 9.8257 18 7 2.0134 2.7371 9.6267 19 14 1.1820 0.9438 11.5607 20 1 2.3938 0.3103 12.1398 21 1 0.7812 2.1030 12.3980 22 1 0.0757 -0.0460 11.5234 23 6 0.7071 0.6803 6.3781 24 6 0.8975 1.1400 5.1085 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.3118 1.6540 -2.1251 31 1 3.1123 4.0232 -1.7423 32 1 2.3631 3.4499 3.3923 33 1 3.5109 3.2406 5.6562 34 1 3.1825 2.4405 7.9415 35 1 2.1610 3.3299 10.3801 36 1 -0.0734 -0.0375 6.5825 37 1 0.2669 0.7851 4.3069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064708021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:59 Heat of formation + Delta-G solvation = -4.319458 kcal Electronic energy + Delta-G solvation = -20995.289101 eV Core-core repulsion = 17827.950949 eV Total energy + Delta-G solvation = -3167.338152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36008 -39.60923 -38.55779 -36.17460 -34.76948 -33.64915 -31.57900 -31.29511 -29.95243 -27.15577 -25.96888 -23.65742 -23.30036 -22.87269 -21.78656 -19.96699 -19.30238 -19.00434 -17.93340 -17.11004 -16.82938 -16.35180 -16.14722 -15.69866 -15.07877 -15.00975 -14.83637 -14.54058 -14.41645 -14.05302 -13.90578 -13.61069 -13.37146 -13.18487 -12.86040 -12.82202 -12.71390 -12.41712 -12.35548 -12.05123 -11.79575 -11.67543 -11.62899 -11.10456 -10.87832 -10.49473 -9.81823 -9.49638 -9.40098 -8.76770 -8.51892 -6.33760 -0.48701 0.51067 0.80784 0.96080 1.12414 1.40183 1.41506 1.51327 1.56208 2.16948 2.24653 2.27087 2.79528 3.65034 3.83129 3.90358 4.16988 4.31960 4.37088 4.47439 4.50819 4.53598 4.76649 4.87577 4.90832 5.05763 5.08073 5.12398 5.14147 5.29312 5.33856 5.38956 5.44584 5.54853 5.68247 5.88214 5.99618 6.11747 6.36232 6.60490 6.66148 6.95440 6.97175 7.26168 8.41499 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.003201 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.744477 B = 8744.240580 C = 9505.014906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.021 4.021 4 C -0.156 4.156 5 C -0.210 4.210 6 S 0.218 5.782 7 C -0.305 4.305 8 C 0.573 3.427 9 O -0.549 6.549 10 N -0.645 5.645 11 C 0.018 3.982 12 C -0.118 4.118 13 C -0.158 4.158 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.071 0.929 17 C 0.030 3.970 18 N -0.838 5.838 19 Si 0.988 3.012 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.220 4.220 24 C -0.093 4.093 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.172 0.828 31 H 0.205 0.795 32 H 0.408 0.592 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.286 0.714 36 H 0.097 0.903 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 4.462 -19.487 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.113 4.113 3 C -0.037 4.037 4 C -0.186 4.186 5 C -0.347 4.347 6 S 0.487 5.513 7 C -0.425 4.425 8 C 0.362 3.638 9 O -0.430 6.430 10 N -0.289 5.289 11 C -0.075 4.075 12 C -0.138 4.138 13 C -0.178 4.178 14 C 0.068 3.932 15 C -0.529 4.529 16 H 0.090 0.910 17 C -0.183 4.183 18 N -0.466 5.466 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.240 4.240 24 C -0.113 4.113 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.189 0.811 31 H 0.222 0.778 32 H 0.244 0.756 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.556 5.253 -18.435 19.339 hybrid contribution -0.473 -1.050 0.146 1.161 sum 2.083 4.203 -18.289 18.881 Atomic orbital electron populations 1.21545 0.94180 1.02071 1.01070 1.20407 0.96664 0.90928 1.03304 1.19810 0.95349 0.97509 0.91017 1.20102 1.04179 0.94550 0.99785 1.25719 1.05916 1.01366 1.01721 1.82906 1.59600 1.08907 0.99886 1.24312 1.19904 1.02205 0.96107 1.17456 0.77860 0.84684 0.83791 1.90752 1.46433 1.20500 1.85283 1.42762 1.68198 1.14083 1.03834 1.17282 1.01026 1.05528 0.83688 1.20577 0.98681 1.01870 0.92675 1.21168 0.99529 1.01877 0.95193 1.18031 0.90009 0.91912 0.93204 1.19719 1.42734 0.99088 0.91362 0.91043 1.26725 0.92076 0.94340 1.05109 1.69819 1.34829 1.07283 1.34674 0.85102 0.79528 0.78758 0.75669 1.18598 1.19163 1.18705 1.20944 1.02539 1.06923 0.93602 1.20510 0.96821 0.98036 0.95907 0.95229 0.91323 0.91675 0.88674 0.91829 0.81081 0.77820 0.75551 0.85971 0.86173 0.90370 0.88467 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.78 71.98 0.70 -2.45 16 2 C -0.07 -1.82 5.50 29.85 0.16 -1.66 16 3 C -0.02 -0.50 5.16 -20.41 -0.11 -0.61 16 4 C -0.16 -2.61 9.96 21.08 0.21 -2.40 16 5 C -0.21 -2.95 10.92 66.82 0.73 -2.22 16 6 S 0.22 4.10 22.16 -56.49 -1.25 2.85 16 7 C -0.31 -8.55 6.45 24.07 0.16 -8.39 16 8 C 0.57 21.09 7.60 86.40 0.66 21.75 16 9 O -0.55 -23.83 11.13 -4.40 -0.05 -23.88 16 10 N -0.64 -23.74 5.29 -306.81 -1.62 -25.36 16 11 C 0.02 0.82 6.30 38.61 0.24 1.06 16 12 C -0.12 -5.47 9.90 22.14 0.22 -5.25 16 13 C -0.16 -8.38 8.61 22.48 0.19 -8.18 16 14 C 0.07 3.97 5.55 -21.27 -0.12 3.85 16 15 C -0.50 -27.74 9.02 23.38 0.21 -27.53 16 16 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 17 C 0.03 1.53 5.42 85.24 0.46 1.99 16 18 N -0.84 -44.02 10.60 21.82 0.23 -43.78 16 19 Si 0.99 39.23 29.56 68.60 2.03 41.26 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.22 -11.71 9.74 22.48 0.22 -11.49 16 24 C -0.09 -4.61 8.61 22.14 0.19 -4.42 16 25 H 0.03 0.88 7.60 -2.39 -0.02 0.87 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 29 H 0.06 2.02 6.33 -2.39 -0.02 2.01 16 30 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.41 12.17 7.94 -92.71 -0.74 11.43 16 33 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 34 H 0.12 6.61 6.13 -2.91 -0.02 6.59 16 35 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 36 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 37 H 0.11 5.35 6.22 -2.91 -0.02 5.33 16 Total: -1.00 -66.73 325.60 3.84 -62.88 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.37 Total: 32.00 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 4.14 Total: -45.96 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.39 Total: -69.14 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.25 Total: 2.85 kcal Total: -66.73 3.84 -62.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064708021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.564 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds