Wall clock time and date at job start Fri Apr 10 2020 20:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09011 * 109.46826 * 2 1 4 4 C 1.50702 * 109.47414 * 240.00286 * 2 1 3 5 5 H 1.08000 * 119.99525 * 245.45884 * 4 2 1 6 6 C 1.37871 * 120.00167 * 65.44576 * 4 2 1 7 7 N 1.31522 * 119.99885 * 9.62495 * 6 4 2 8 8 Si 1.86801 * 120.00161 * 189.62002 * 6 4 2 9 9 H 1.48497 * 109.46937 * 84.99920 * 8 6 4 10 10 H 1.48501 * 109.47028 * 204.99958 * 8 6 4 11 11 H 1.48499 * 109.46758 * 324.99733 * 8 6 4 12 12 N 1.46500 * 109.47695 * 119.99597 * 2 1 3 13 13 C 1.46503 * 119.99752 * 60.00102 * 12 2 1 14 14 S 1.65595 * 120.00397 * 240.00656 * 12 2 1 15 15 O 1.42100 * 104.27929 * 153.92643 * 14 12 2 16 16 O 1.42103 * 104.27945 * 26.06586 * 14 12 2 17 17 C 1.81401 * 104.44893 * 269.99903 * 14 12 2 18 18 C 1.50697 * 109.47447 * 180.02562 * 17 14 12 19 19 C 1.38268 * 119.98649 * 269.72431 * 18 17 14 20 20 C 1.38225 * 120.04915 * 179.72424 * 19 18 17 21 21 C 1.38210 * 120.02702 * 0.54704 * 20 19 18 22 22 C 1.38437 * 119.97733 * 359.72670 * 21 20 19 23 23 F 1.35099 * 120.03124 * 180.02562 * 22 21 20 24 24 C 1.38173 * 119.98809 * 89.99712 * 18 17 14 25 25 H 1.09006 * 109.47004 * 303.28694 * 1 2 3 26 26 H 1.08994 * 109.47444 * 63.29295 * 1 2 3 27 27 H 1.08999 * 109.47012 * 183.29178 * 1 2 3 28 28 H 0.96995 * 119.99819 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47177 * 270.00081 * 13 12 2 30 30 H 1.09001 * 109.46800 * 30.00029 * 13 12 2 31 31 H 1.08997 * 109.46819 * 150.00043 * 13 12 2 32 32 H 1.08998 * 109.47071 * 59.99405 * 17 14 12 33 33 H 1.09007 * 109.46635 * 299.99714 * 17 14 12 34 34 H 1.07999 * 119.97032 * 359.97438 * 19 18 17 35 35 H 1.07998 * 119.98201 * 180.27487 * 20 19 18 36 36 H 1.08002 * 120.01282 * 179.70455 * 21 20 19 37 37 H 1.08003 * 120.01843 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1338 6 6 1.7944 -0.1775 -2.4796 7 7 1.3000 1.0360 -2.5936 8 14 2.1743 -1.1788 -4.0101 9 1 1.0215 -2.0608 -4.3233 10 1 2.4213 -0.2625 -5.1524 11 1 3.3823 -2.0089 -3.7712 12 7 2.0184 -0.6905 1.1962 13 6 1.6646 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 2.7433 -0.5610 3.5157 16 8 2.6121 1.4798 2.1233 17 6 4.6649 -0.1726 1.7058 18 6 5.6357 0.5184 2.6283 19 6 6.0220 1.8216 2.3746 20 6 6.9079 2.4585 3.2231 21 6 7.4175 1.7896 4.3199 22 6 7.0360 0.4829 4.5718 23 9 7.5330 -0.1719 5.6439 24 6 6.1439 -0.1524 3.7242 25 1 -0.3633 0.5641 0.8591 26 1 -0.3634 0.4618 -0.9180 27 1 -0.3633 -1.0260 0.0590 28 1 1.1330 1.4110 -3.4723 29 1 0.7377 -2.1443 1.9995 30 1 1.5296 -2.5968 0.4709 31 1 2.4631 -2.5817 1.9864 32 1 4.7757 0.2251 0.6971 33 1 4.8701 -1.2432 1.6989 34 1 5.6279 2.3434 1.5151 35 1 7.2054 3.4779 3.0264 36 1 8.1135 2.2859 4.9800 37 1 5.8452 -1.1717 3.9200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068914313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:09 Heat of formation + Delta-G solvation = -92.936725 kcal Electronic energy + Delta-G solvation = -22736.902337 eV Core-core repulsion = 19134.952227 eV Total energy + Delta-G solvation = -3601.950110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.99616 -39.25423 -36.64373 -36.23239 -35.38527 -33.05220 -32.64168 -30.68660 -29.24669 -27.49716 -25.57823 -25.21063 -22.89881 -21.97982 -20.80831 -18.29923 -17.52068 -17.01671 -16.62326 -16.38219 -16.27238 -15.92554 -15.60938 -15.43782 -14.69437 -14.23687 -13.67446 -13.56398 -13.48322 -13.22047 -12.73145 -12.55120 -12.39949 -12.03934 -11.87025 -11.84205 -11.58106 -11.50015 -11.31375 -11.23753 -11.05650 -10.88148 -10.80907 -10.48550 -10.34923 -10.08091 -9.41329 -9.06504 -8.77728 -8.51583 -7.99172 -6.18840 -4.24878 0.53255 1.03978 1.18697 3.20596 3.24231 3.28555 3.31539 3.43170 3.99811 4.24168 4.31031 4.47327 4.51318 4.74590 4.86820 5.07724 5.13013 5.18342 5.28188 5.49334 5.57150 5.83531 5.92172 5.92583 6.12651 6.15255 6.27581 6.29380 6.58760 6.72589 6.74264 6.79875 7.02627 7.34823 7.54982 7.68807 7.87208 8.16468 8.78544 9.40988 10.88121 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.004495 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.706164 B = 6227.203333 C = 6689.859504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.262 3.738 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.982 5.982 13 C 0.103 3.897 14 S 2.606 3.394 15 O -0.968 6.968 16 O -0.948 6.948 17 C -0.598 4.598 18 C -0.052 4.052 19 C -0.116 4.116 20 C -0.087 4.087 21 C -0.153 4.153 22 C 0.098 3.902 23 F -0.139 7.139 24 C -0.145 4.145 25 H 0.019 0.981 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -0.956 8.903 12.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.160 3.840 3 H 0.086 0.914 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.821 5.821 13 C -0.043 4.043 14 S 2.698 3.302 15 O -0.959 6.959 16 O -0.938 6.938 17 C -0.723 4.723 18 C -0.054 4.054 19 C -0.135 4.135 20 C -0.105 4.105 21 C -0.173 4.173 22 C 0.079 3.921 23 F -0.118 7.118 24 C -0.165 4.165 25 H 0.038 0.962 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.058 -0.373 9.529 13.152 hybrid contribution 0.751 -1.061 -1.333 1.862 sum 9.809 -1.434 8.196 12.862 Atomic orbital electron populations 1.21959 0.98070 0.99231 1.00465 1.18810 0.91740 0.93435 0.80042 0.91391 1.21372 1.36971 1.08894 0.90388 0.91777 1.24930 0.95011 0.94594 0.98994 1.69961 1.43909 1.13700 1.24318 0.86613 0.78762 0.80090 0.82534 1.20430 1.21222 1.19971 1.57487 1.62977 1.21538 1.40118 1.21245 0.99341 0.81848 1.01873 1.05161 0.76182 0.74696 0.74194 1.93530 1.83935 1.75754 1.42649 1.93577 1.80535 1.33562 1.86174 1.29910 1.22838 1.09730 1.09786 1.18951 0.97623 0.94340 0.94438 1.21381 0.97447 0.94066 1.00620 1.21045 0.95979 1.00158 0.93368 1.21209 1.02740 0.93363 0.99954 1.17601 0.97088 0.91438 0.85943 1.91500 1.86058 1.81059 1.53138 1.21146 0.98347 1.01708 0.95301 0.96216 0.90614 0.94624 0.92484 0.93554 0.90125 0.93054 0.82894 0.84345 0.84023 0.84325 0.84490 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.12 37.16 0.34 -2.81 16 2 C 0.26 6.16 2.43 -69.08 -0.17 5.99 16 3 H 0.07 1.76 6.82 -51.92 -0.35 1.41 16 4 C -0.54 -13.16 8.01 -34.44 -0.28 -13.44 16 5 H 0.06 1.51 7.16 -52.49 -0.38 1.13 16 6 C 0.07 1.74 5.17 -17.82 -0.09 1.65 16 7 N -0.88 -23.60 12.17 55.43 0.67 -22.93 16 8 Si 0.89 19.67 29.55 -169.99 -5.02 14.64 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 N -0.98 -19.51 2.99 -115.85 -0.35 -19.86 16 13 C 0.10 1.75 9.12 59.85 0.55 2.30 16 14 S 2.61 48.80 5.35 -107.50 -0.57 48.23 16 15 O -0.97 -19.18 17.09 -57.54 -0.98 -20.16 16 16 O -0.95 -20.73 16.57 -57.54 -0.95 -21.68 16 17 C -0.60 -8.88 6.31 36.00 0.23 -8.65 16 18 C -0.05 -0.74 5.14 -104.64 -0.54 -1.28 16 19 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 20 C -0.09 -0.96 10.04 -39.60 -0.40 -1.35 16 21 C -0.15 -1.69 10.03 -39.52 -0.40 -2.08 16 22 C 0.10 1.27 7.30 -39.42 -0.29 0.98 16 23 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 24 C -0.15 -1.99 9.68 -39.51 -0.38 -2.37 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.87 6.84 -51.93 -0.36 1.51 16 27 H 0.03 0.75 7.56 -51.93 -0.39 0.35 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.36 6.92 -51.93 -0.36 1.00 16 31 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 32 H 0.15 2.23 8.08 -51.92 -0.42 1.81 16 33 H 0.14 1.72 8.08 -51.92 -0.42 1.30 16 34 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -30.37 330.42 -8.75 -39.12 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.75 Total: 2.40 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.81 Total: -22.98 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.33 Total: -42.79 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.94 Total: -41.84 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 48.80 SS G_CDS: -0.57 Total: 48.23 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.37 -8.75 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068914313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.812 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds