Wall clock time and date at job start Fri Apr 10 2020 20:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00104 * 2 1 4 4 H 1.48499 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47253 * 300.00068 * 3 2 1 6 6 H 1.48507 * 109.47254 * 60.00004 * 3 2 1 7 7 C 1.37880 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47344 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.76198 * 103.00437 * 180.02562 * 11 10 9 13 13 N 1.31395 * 125.37414 * 359.97363 * 12 11 10 14 14 N 1.40424 * 107.04749 * 180.02562 * 13 12 11 15 15 H 0.97000 * 126.87222 * 180.02562 * 14 13 12 16 16 C 1.36054 * 106.26390 * 0.02562 * 14 13 12 17 17 C 1.46763 * 126.13320 * 179.97438 * 16 14 13 18 18 C 1.34570 * 119.99454 * 180.02562 * 17 16 14 19 19 C 1.47296 * 119.99382 * 180.02562 * 18 17 16 20 20 C 1.39787 * 120.16935 * 359.97265 * 19 18 17 21 21 C 1.37901 * 119.83403 * 180.02562 * 20 19 18 22 22 C 1.38395 * 120.16390 * 359.97438 * 21 20 19 23 23 C 1.38386 * 120.33675 * 0.02562 * 22 21 20 24 24 C 1.37904 * 120.16616 * 0.02562 * 23 22 21 25 25 N 1.32195 * 107.73405 * 0.22325 * 16 14 13 26 26 H 0.96998 * 120.00011 * 359.97438 * 1 2 3 27 27 H 1.09013 * 109.47009 * 59.99447 * 9 7 2 28 28 H 1.08998 * 109.47000 * 300.00375 * 9 7 2 29 29 H 1.08997 * 109.46994 * 60.00109 * 10 9 7 30 30 H 1.08995 * 109.47143 * 300.00312 * 10 9 7 31 31 H 1.07991 * 120.00336 * 359.97438 * 17 16 14 32 32 H 1.07991 * 120.00211 * 359.97438 * 18 17 16 33 33 H 1.08004 * 120.08300 * 0.04576 * 20 19 18 34 34 H 1.07997 * 119.92045 * 180.25309 * 21 20 19 35 35 H 1.08000 * 119.82738 * 179.97438 * 22 21 20 36 36 H 1.08004 * 119.91915 * 180.02562 * 23 22 21 37 37 H 1.08007 * 120.08414 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 -0.0002 12 6 2.6268 -6.4348 0.0006 13 7 3.9138 -6.1701 0.0011 14 7 4.5875 -7.4022 0.0011 15 1 5.5476 -7.5406 0.0017 16 6 3.6243 -8.3631 0.0000 17 6 3.8489 -9.8135 -0.0009 18 6 2.8001 -10.6566 -0.0024 19 6 3.0255 -12.1122 -0.0028 20 6 4.3272 -12.6215 -0.0021 21 6 4.5303 -13.9855 -0.0030 22 6 3.4491 -14.8495 -0.0040 23 6 2.1575 -14.3528 -0.0046 24 6 1.9386 -12.9913 -0.0049 25 7 2.4500 -7.7562 -0.0055 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8719 -3.6043 -0.8894 31 1 4.8557 -10.2040 -0.0012 32 1 1.7933 -10.2660 -0.0025 33 1 5.1719 -11.9485 -0.0006 34 1 5.5354 -14.3805 0.0017 35 1 3.6144 -15.9168 -0.0051 36 1 1.3187 -15.0332 -0.0050 37 1 0.9299 -12.6051 -0.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073999549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:17 Heat of formation + Delta-G solvation = 109.840392 kcal Electronic energy + Delta-G solvation = -19281.785221 eV Core-core repulsion = 16151.690163 eV Total energy + Delta-G solvation = -3130.095058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76865 -39.57535 -35.12633 -33.72095 -32.49628 -31.70679 -31.39035 -30.87003 -29.02415 -25.31251 -24.51037 -23.23233 -22.84732 -21.80439 -20.99336 -19.52109 -18.28772 -17.26386 -16.54116 -16.10102 -15.77531 -15.54210 -15.46217 -14.67987 -14.48689 -13.95265 -13.79836 -13.72451 -13.49383 -13.39707 -12.46623 -12.18662 -12.05661 -11.65233 -11.57493 -11.35799 -11.33858 -11.04333 -10.62503 -10.57637 -10.30091 -10.18347 -9.81153 -9.79673 -9.69181 -9.38746 -9.11220 -8.43386 -8.40363 -7.23875 -6.06782 -4.10825 0.13577 0.98611 1.38065 1.61787 2.22477 2.52787 3.03888 3.08697 3.29325 3.36860 3.41370 3.51307 4.06218 4.26563 4.42195 4.43856 4.53790 4.69757 4.80552 4.97627 5.00331 5.13396 5.29263 5.50434 5.56198 5.73111 5.82179 5.98758 6.00017 6.06498 6.09495 6.20791 6.26336 6.27906 6.53128 6.69075 6.98889 7.52142 7.59072 7.89116 7.93789 8.25992 8.93763 9.53066 11.04179 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.052179 B = 0.001998 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.487802 B =14007.208601 C =14523.249329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.036 3.964 10 C -0.084 4.084 11 S -0.010 6.010 12 C 0.220 3.780 13 N -0.311 5.311 14 N -0.482 5.482 15 H 0.439 0.561 16 C 0.315 3.685 17 C -0.111 4.111 18 C -0.034 4.034 19 C -0.067 4.067 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.095 4.095 25 N -0.510 5.510 26 H 0.262 0.738 27 H 0.029 0.971 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 -29.685 0.008 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.233 4.233 11 S 0.219 5.781 12 C -0.169 4.169 13 N -0.145 5.145 14 N -0.202 5.202 15 H 0.285 0.715 16 C 0.039 3.961 17 C -0.131 4.131 18 C -0.057 4.057 19 C -0.068 4.068 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.114 4.114 25 N -0.240 5.240 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.467 -29.099 0.000 30.042 hybrid contribution 2.630 0.777 0.004 2.742 sum 10.097 -28.322 0.004 30.068 Atomic orbital electron populations 1.69975 1.06040 1.26832 1.50052 1.25009 0.94925 0.99324 0.95022 0.86439 0.80027 0.83312 0.77657 1.19679 1.20885 1.20888 1.21087 0.93157 0.89884 1.51663 0.92191 1.18962 0.93411 0.89189 0.98784 1.24039 1.02514 0.91846 1.04921 1.85848 1.04642 0.96136 1.91474 1.26368 0.95211 0.95284 1.00079 1.78516 1.05448 1.01465 1.29094 1.48122 1.09904 1.03819 1.58312 0.71547 1.22643 0.84516 0.92065 0.96843 1.20847 0.99990 0.85608 1.06664 1.22307 1.00090 0.90590 0.92689 1.19018 0.93516 0.92530 1.01699 1.21404 0.96242 0.95612 0.99213 1.21102 0.99177 0.93278 1.00467 1.21312 0.92767 0.99913 0.99189 1.21143 0.97208 0.95350 1.00270 1.21428 0.98714 0.93129 0.98082 1.70868 1.23620 1.04227 1.25286 0.92788 0.95222 0.95210 0.90252 0.90259 0.84383 0.84043 0.85626 0.85802 0.85956 0.85659 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.04 0.93 4.98 -27.89 -0.14 0.79 16 10 C -0.08 -1.84 5.48 37.15 0.20 -1.64 16 11 S -0.01 -0.19 22.16 -107.50 -2.38 -2.57 16 12 C 0.22 4.14 8.25 -91.18 -0.75 3.39 16 13 N -0.31 -5.58 12.33 30.09 0.37 -5.21 16 14 N -0.48 -6.34 7.52 32.18 0.24 -6.10 16 15 H 0.44 3.85 8.96 -182.35 -1.63 2.21 16 16 C 0.32 4.18 7.96 -154.89 -1.23 2.95 16 17 C -0.11 -1.00 9.59 -37.44 -0.36 -1.36 16 18 C -0.03 -0.30 9.54 -37.20 -0.35 -0.66 16 19 C -0.07 -0.53 5.87 -105.06 -0.62 -1.15 16 20 C -0.11 -0.71 9.41 -39.13 -0.37 -1.08 16 21 C -0.12 -0.73 10.03 -39.65 -0.40 -1.13 16 22 C -0.11 -0.66 10.04 -39.47 -0.40 -1.06 16 23 C -0.12 -0.76 10.03 -39.65 -0.40 -1.15 16 24 C -0.10 -0.69 9.79 -39.13 -0.38 -1.07 16 25 N -0.51 -8.64 10.76 -11.56 -0.12 -8.77 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.14 0.78 6.07 -52.49 -0.32 0.46 16 32 H 0.14 1.40 7.72 -52.49 -0.41 1.00 16 33 H 0.13 0.60 6.17 -52.48 -0.32 0.28 16 34 H 0.12 0.49 8.06 -52.49 -0.42 0.06 16 35 H 0.12 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -33.38 342.24 -12.23 -45.61 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.61 Total: -2.49 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -5.60 Total: -16.41 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 1.22 Total: -45.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.38 Total: -2.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.38 -12.23 -45.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073999549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.452 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds