Wall clock time and date at job start Fri Apr 10 2020 20:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47179 * 2 1 4 4 C 1.50709 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.29023 * 124.91372 * 89.99896 * 4 3 2 6 6 C 1.31784 * 117.12236 * 179.97438 * 5 4 3 7 7 C 1.50706 * 122.74680 * 180.02562 * 6 5 4 8 8 S 1.81392 * 109.47056 * 89.98047 * 7 6 5 9 9 O 1.42097 * 109.47272 * 63.60812 * 8 7 6 10 10 C 1.81402 * 102.99773 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.46850 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46976 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47181 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00001 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00353 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99733 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00512 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46917 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47282 * 120.00179 * 17 15 13 20 20 H 1.48500 * 109.46877 * 239.99994 * 17 15 13 21 21 C 1.33639 * 114.50230 * 0.02562 * 6 5 4 22 22 S 1.70979 * 124.91513 * 270.00245 * 4 3 2 23 23 H 1.09006 * 109.47265 * 299.99602 * 1 2 3 24 24 H 1.09000 * 109.47141 * 59.99499 * 1 2 3 25 25 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46844 * 240.00153 * 2 1 3 27 27 H 1.09000 * 109.47141 * 120.00501 * 2 1 3 28 28 H 1.09004 * 109.46922 * 60.00537 * 3 2 1 29 29 H 1.09000 * 109.47493 * 300.00285 * 3 2 1 30 30 H 1.09001 * 109.46722 * 209.97899 * 7 6 5 31 31 H 1.09004 * 109.46932 * 329.97719 * 7 6 5 32 32 H 1.08999 * 109.47060 * 299.99215 * 10 8 7 33 33 H 1.08992 * 109.47194 * 59.99969 * 10 8 7 34 34 H 1.08996 * 109.47469 * 299.99752 * 11 10 8 35 35 H 1.08998 * 109.47526 * 59.99869 * 11 10 8 36 36 H 1.08996 * 109.47298 * 300.00443 * 12 11 10 37 37 H 1.09004 * 109.46957 * 60.00105 * 12 11 10 38 38 H 0.97004 * 120.00188 * 180.02562 * 16 15 13 39 39 H 1.07997 * 126.03698 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.2859 1.4423 -1.0571 6 6 5.5915 1.4428 -0.8779 7 6 6.5715 1.4433 -2.0228 8 16 6.9635 3.1536 -2.4824 9 8 7.6124 3.7994 -1.3956 10 6 8.1352 2.9496 -3.8522 11 6 8.5689 4.3257 -4.3615 12 6 9.5576 4.1537 -5.5164 13 6 9.9844 5.5090 -6.0184 14 1 9.5902 6.4036 -5.5593 15 6 10.8780 5.6070 -7.0637 16 7 11.3577 4.5176 -7.6231 17 14 11.4076 7.2870 -7.6856 18 1 10.7287 8.3443 -6.8941 19 1 12.8788 7.4272 -7.5408 20 1 11.0357 7.4249 -9.1166 21 6 5.9753 1.4430 0.4023 22 16 4.5251 1.4426 1.4031 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9562 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 7.4843 0.9301 -1.7199 31 1 6.1320 0.9289 -2.8774 32 1 9.0089 2.3988 -3.5040 33 1 7.6562 2.3978 -4.6609 34 1 7.6951 4.8763 -4.7098 35 1 9.0478 4.8780 -3.5529 36 1 10.4314 3.6032 -5.1678 37 1 9.0791 3.6012 -6.3251 38 1 11.9867 4.5865 -8.3583 39 1 6.9942 1.4430 0.7601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078715713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:16 Heat of formation + Delta-G solvation = -24.975655 kcal Electronic energy + Delta-G solvation = -18806.459170 eV Core-core repulsion = 15773.669250 eV Total energy + Delta-G solvation = -3032.789920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11553 -35.69995 -35.46469 -34.42089 -32.08861 -32.01721 -28.66792 -27.74998 -27.40770 -23.79078 -23.26173 -21.70215 -20.35396 -19.91874 -17.93303 -17.33094 -16.32827 -15.81291 -15.59161 -15.45443 -14.80856 -14.63216 -14.48756 -14.30809 -13.89424 -13.57198 -13.52528 -13.05014 -12.44494 -12.37969 -12.16240 -12.02208 -11.97934 -11.69690 -11.55067 -11.37849 -11.13547 -10.88020 -10.79580 -10.66272 -10.24429 -9.87514 -9.78939 -9.61080 -9.44943 -9.12158 -8.74036 -8.35799 -7.93308 -6.00496 -4.02973 0.45730 1.12479 1.47463 1.58928 2.66877 2.86676 3.31631 3.38983 3.43906 3.65734 4.01085 4.46395 4.48305 4.59319 4.61167 4.81644 4.99617 5.10609 5.15537 5.30254 5.35225 5.37380 5.39701 5.47545 5.54757 5.61820 5.65730 5.74496 5.86300 5.97776 6.20581 6.51741 6.70738 7.04897 7.50720 7.66297 7.78586 7.99099 8.41011 9.04216 9.61273 11.10784 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.002331 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.508773 B =12010.374552 C =12335.445046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.044 4.044 4 C 0.053 3.947 5 N -0.461 5.461 6 C 0.093 3.907 7 C -0.381 4.381 8 S 1.239 4.761 9 O -0.843 6.843 10 C -0.433 4.433 11 C -0.093 4.093 12 C 0.026 3.974 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.251 4.251 22 S 0.116 5.884 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.014 0.986 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.062 -10.640 16.601 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.226 4.226 5 N -0.176 5.176 6 C -0.039 4.039 7 C -0.517 4.517 8 S 1.438 4.562 9 O -0.838 6.838 10 C -0.572 4.572 11 C -0.132 4.132 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.391 4.391 22 S 0.371 5.629 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -22.736 -9.876 17.479 30.331 hybrid contribution 3.127 -0.425 -0.516 3.198 sum -19.609 -10.301 16.962 27.899 Atomic orbital electron populations 1.21763 0.94891 1.02083 1.02167 1.21531 0.96284 0.95055 1.02906 1.20355 0.84635 0.98871 1.04593 1.27052 1.01424 1.03257 0.90882 1.66049 1.03929 1.16047 1.31568 1.19259 0.89554 1.02285 0.92756 1.26395 1.01030 1.22804 1.01476 1.70983 1.09906 0.84785 0.90511 1.93085 1.77669 1.62279 1.50796 1.27682 1.11225 1.06112 1.12205 1.21315 1.00620 0.91016 1.00253 1.19104 0.93222 0.97155 0.91716 1.21316 1.25615 0.92771 1.16268 0.92466 1.25038 0.96244 0.96641 0.96637 1.69977 1.31602 1.27436 1.24545 0.86520 0.78368 0.84398 0.78649 1.19650 1.21062 1.20944 1.26832 1.03361 1.13004 0.95926 1.83902 0.97637 1.68451 1.12912 0.92536 0.92234 0.92375 0.91095 0.91816 0.89587 0.88326 0.88223 0.84761 0.90034 0.86673 0.92058 0.92834 0.96736 0.96191 0.93056 0.80749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.69 5.92 -26.74 -0.16 -0.85 16 3 C -0.04 -0.29 5.80 -27.88 -0.16 -0.45 16 4 C 0.05 0.52 6.64 -13.45 -0.09 0.43 16 5 N -0.46 -5.52 10.53 -8.05 -0.08 -5.60 16 6 C 0.09 1.18 6.00 -84.22 -0.51 0.67 16 7 C -0.38 -4.46 6.35 36.01 0.23 -4.23 16 8 S 1.24 17.15 13.14 -107.50 -1.41 15.73 16 9 O -0.84 -16.53 18.14 -35.23 -0.64 -17.16 16 10 C -0.43 -6.99 5.92 37.16 0.22 -6.77 16 11 C -0.09 -1.93 5.16 -26.73 -0.14 -2.07 16 12 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.25 -3.04 11.13 29.12 0.32 -2.71 16 22 S 0.12 1.11 23.18 -107.50 -2.49 -1.39 16 23 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.15 8.12 -51.92 -0.42 0.72 16 31 H 0.13 1.28 8.14 -51.92 -0.42 0.85 16 32 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 33 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -36.16 357.72 -10.29 -46.45 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -6.30 Total: -4.33 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: -0.46 Total: -29.54 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.65 Total: -32.04 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.64 Total: -17.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 18.25 SS G_CDS: -3.90 Total: 14.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.16 -10.29 -46.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078715713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.471 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds