Wall clock time and date at job start Fri Apr 10 2020 20:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00158 * 2 1 4 4 H 1.08997 * 109.47264 * 329.99775 * 3 2 1 5 5 C 1.52999 * 109.47159 * 90.00258 * 3 2 1 6 6 C 1.50706 * 109.47399 * 210.00224 * 3 2 1 7 7 N 1.29022 * 124.91641 * 134.72246 * 6 3 2 8 8 C 1.31791 * 117.12054 * 179.81644 * 7 6 3 9 9 C 1.50700 * 122.74601 * 180.22754 * 8 7 6 10 10 S 1.81400 * 109.46783 * 270.23686 * 9 8 7 11 11 C 1.81398 * 103.00010 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47284 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99791 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99939 * 179.97438 * 14 13 12 17 17 N 1.31523 * 120.00044 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00100 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46850 * 90.00228 * 18 16 14 20 20 H 1.48499 * 109.47196 * 210.00176 * 18 16 14 21 21 H 1.48494 * 109.47227 * 330.00253 * 18 16 14 22 22 C 1.33641 * 114.50066 * 0.46688 * 8 7 6 23 23 S 1.70982 * 124.91206 * 315.02547 * 6 3 2 24 24 H 1.08998 * 109.46733 * 300.00054 * 1 2 3 25 25 H 1.09009 * 109.46871 * 59.99895 * 1 2 3 26 26 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46915 * 300.00099 * 5 3 2 28 28 H 1.09000 * 109.47176 * 60.00067 * 5 3 2 29 29 H 1.09002 * 109.47217 * 180.02562 * 5 3 2 30 30 H 1.08992 * 109.47326 * 30.23708 * 9 8 7 31 31 H 1.08999 * 109.47194 * 150.24508 * 9 8 7 32 32 H 1.08996 * 109.47105 * 300.00244 * 11 10 9 33 33 H 1.09002 * 109.47350 * 60.00365 * 11 10 9 34 34 H 1.08996 * 109.47313 * 300.00196 * 12 11 10 35 35 H 1.09010 * 109.47103 * 60.00257 * 12 11 10 36 36 H 1.08996 * 109.47163 * 300.00298 * 13 12 11 37 37 H 1.08994 * 109.47185 * 60.00227 * 13 12 11 38 38 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 39 39 H 1.07992 * 126.03851 * 179.79090 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3387 1.2639 -0.7105 7 7 3.7354 2.1250 -1.5855 8 6 4.9309 1.9422 -2.1093 9 6 5.5213 2.8724 -3.1374 10 16 5.0610 2.3079 -4.7987 11 6 5.8512 3.5321 -5.8792 12 6 5.5532 3.1905 -7.3405 13 6 6.2192 4.2235 -8.2518 14 6 5.9251 3.8873 -9.6912 15 1 5.3230 3.0236 -9.9318 16 6 6.4237 4.6830 -10.7007 17 7 7.1565 5.7351 -10.4076 18 14 6.0598 4.2659 -12.4848 19 1 4.8079 4.9446 -12.9063 20 1 7.1838 4.7251 -13.3397 21 1 5.8982 2.7966 -12.6267 22 6 5.5744 0.8615 -1.6577 23 16 4.5352 0.0646 -0.4789 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.2569 1.8013 1.9563 28 1 2.8830 1.0774 1.9563 29 1 2.6607 2.7672 1.4425 30 1 5.1392 3.8805 -2.9774 31 1 6.6072 2.8762 -3.0429 32 1 5.4612 4.5239 -5.6507 33 1 6.9289 3.5190 -5.7160 34 1 5.9436 2.1988 -7.5687 35 1 4.4755 3.2033 -7.5042 36 1 5.8284 5.2150 -8.0235 37 1 7.2967 4.2111 -8.0883 38 1 7.5076 6.2947 -11.1178 39 1 6.5579 0.5346 -1.9613 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161908885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:51 Heat of formation + Delta-G solvation = -21.270065 kcal Electronic energy + Delta-G solvation = -18622.250535 eV Core-core repulsion = 15589.621301 eV Total energy + Delta-G solvation = -3032.629234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21825 -38.54625 -34.43814 -33.34124 -32.00984 -30.94520 -28.05965 -27.36515 -27.29794 -25.30953 -23.39997 -22.07407 -20.35523 -19.95993 -18.19576 -16.75530 -16.51039 -16.40323 -15.92790 -15.67495 -15.01272 -14.63627 -14.58301 -14.39235 -13.74533 -13.49155 -13.34963 -13.21568 -13.03571 -12.64409 -12.47392 -12.11179 -11.86655 -11.68695 -11.53516 -11.40216 -10.89767 -10.86635 -10.53886 -10.28532 -9.89261 -9.85017 -9.77777 -9.60127 -9.30014 -9.11792 -8.84604 -8.35930 -7.40641 -6.01030 -4.03406 0.40717 1.12927 1.51388 1.67934 2.73890 2.91759 3.05625 3.32771 3.38708 3.42872 3.96546 4.41444 4.46192 4.62024 4.69060 4.83676 4.88694 4.98864 5.03723 5.19009 5.27600 5.28990 5.33891 5.34894 5.49026 5.52824 5.64820 5.65316 5.84238 6.14523 6.57048 6.60056 6.73343 7.03176 7.49337 7.64371 7.76662 7.98086 8.40050 9.03037 9.60724 11.10321 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002205 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.751606 B =12692.815968 C =13095.150268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.163 3.837 4 H 0.093 0.907 5 C -0.168 4.168 6 C 0.041 3.959 7 N -0.452 5.452 8 C 0.088 3.912 9 C -0.017 4.017 10 S -0.260 6.260 11 C -0.075 4.075 12 C -0.094 4.094 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.244 4.244 23 S 0.162 5.838 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -10.167 27.130 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.101 3.899 4 H 0.111 0.889 5 C -0.227 4.227 6 C -0.237 4.237 7 N -0.167 5.167 8 C -0.045 4.045 9 C -0.168 4.168 10 S -0.031 6.031 11 C -0.223 4.223 12 C -0.133 4.133 13 C -0.011 4.011 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.386 4.386 23 S 0.417 5.583 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.135 -11.534 27.277 30.992 hybrid contribution 0.802 1.738 -1.386 2.363 sum -8.333 -9.796 25.891 28.910 Atomic orbital electron populations 1.22861 0.79800 1.03323 1.00474 1.87911 1.20637 1.26338 1.95101 1.20289 0.88560 0.86111 0.94897 0.88888 1.22287 1.03274 1.02413 0.94679 1.26600 1.01317 0.95983 0.99838 1.65944 1.14317 1.28154 1.08331 1.19362 0.90008 0.96307 0.98826 1.21728 1.02303 1.00089 0.92657 1.87117 1.73060 1.43326 0.99591 1.23665 1.01815 0.98373 0.98426 1.21463 1.01355 1.01327 0.89202 1.19104 0.95690 0.93240 0.93097 1.21225 1.32179 1.11281 0.91146 0.92546 1.25026 0.95136 0.95061 0.99262 1.69965 1.34990 1.15926 1.32666 0.86566 0.77862 0.78724 0.84712 1.20624 1.21210 1.19826 1.26990 1.06550 1.00302 1.04804 1.83949 1.08177 1.28191 1.37964 0.93604 0.93411 0.89066 0.91038 0.91308 0.90732 0.88457 0.88548 0.90419 0.90452 0.92389 0.92379 0.96408 0.96403 0.92978 0.80091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.49 10.18 -35.23 -0.36 -3.85 16 3 C 0.16 1.46 3.24 -27.88 -0.09 1.37 16 4 H 0.09 0.81 7.79 -51.93 -0.40 0.41 16 5 C -0.17 -1.11 9.51 37.16 0.35 -0.75 16 6 C 0.04 0.47 6.34 -13.46 -0.09 0.38 16 7 N -0.45 -6.13 10.53 -8.05 -0.08 -6.22 16 8 C 0.09 1.14 6.00 -84.22 -0.51 0.64 16 9 C -0.02 -0.23 6.36 36.01 0.23 0.00 16 10 S -0.26 -4.26 21.72 -107.50 -2.33 -6.59 16 11 C -0.07 -1.31 5.94 37.16 0.22 -1.09 16 12 C -0.09 -2.01 5.16 -26.73 -0.14 -2.14 16 13 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 14 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.24 -2.68 11.13 29.12 0.32 -2.36 16 23 S 0.16 1.61 23.01 -107.50 -2.47 -0.86 16 24 H 0.05 0.20 7.87 -51.93 -0.41 -0.21 16 25 H 0.05 0.28 8.09 -51.92 -0.42 -0.14 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.06 8.12 -51.92 -0.42 0.64 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -32.33 358.89 -9.53 -41.86 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.25 Total: -4.53 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 0.85 Total: -15.78 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.65 Total: -32.51 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.36 Total: -3.85 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -4.81 Total: -7.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.33 -9.53 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161908885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.595 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds