Wall clock time and date at job start Fri Apr 10 2020 20:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00172 * 2 1 4 4 H 1.09001 * 109.47232 * 29.99319 * 3 2 1 5 5 C 1.53006 * 109.46748 * 269.99873 * 3 2 1 6 6 C 1.50698 * 109.47154 * 150.00006 * 3 2 1 7 7 N 1.29025 * 124.91336 * 224.99553 * 6 3 2 8 8 C 1.31779 * 117.12651 * 179.97438 * 7 6 3 9 9 C 1.50699 * 122.75200 * 179.97438 * 8 7 6 10 10 S 1.81405 * 109.46930 * 90.00198 * 9 8 7 11 11 C 1.81401 * 102.99879 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47306 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47720 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47377 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00326 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00012 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00207 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47285 * 120.00419 * 18 16 14 21 21 H 1.48507 * 109.47213 * 240.00024 * 18 16 14 22 22 C 1.33642 * 114.50008 * 0.02562 * 8 7 6 23 23 S 1.70971 * 124.91964 * 44.69595 * 6 3 2 24 24 H 1.08994 * 109.46897 * 300.00216 * 1 2 3 25 25 H 1.09001 * 109.46938 * 60.00344 * 1 2 3 26 26 H 1.08997 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 28 28 H 1.08993 * 109.46955 * 299.99993 * 5 3 2 29 29 H 1.09000 * 109.47050 * 59.99822 * 5 3 2 30 30 H 1.09001 * 109.47371 * 210.00047 * 9 8 7 31 31 H 1.09000 * 109.47222 * 330.00170 * 9 8 7 32 32 H 1.09000 * 109.46947 * 299.99979 * 11 10 9 33 33 H 1.08996 * 109.47196 * 60.00241 * 11 10 9 34 34 H 1.09003 * 109.46750 * 300.00250 * 12 11 10 35 35 H 1.09006 * 109.47382 * 59.99412 * 12 11 10 36 36 H 1.09003 * 109.47274 * 300.00004 * 13 12 11 37 37 H 1.09006 * 109.47112 * 59.99321 * 13 12 11 38 38 H 0.96993 * 120.00587 * 179.97438 * 17 16 14 39 39 H 1.07993 * 126.04010 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9995 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2639 0.7104 7 7 3.7375 2.1279 1.5817 8 6 4.9308 1.9423 2.1092 9 6 5.5215 2.8729 3.1369 10 16 5.0605 2.3097 4.7986 11 6 5.8499 3.5351 5.8783 12 6 5.5513 3.1947 7.3398 13 6 6.2175 4.2278 8.2506 14 6 5.9228 3.8929 9.6899 15 1 5.3209 3.0292 9.9311 16 6 6.4225 4.6884 10.6992 17 7 7.1560 5.7399 10.4056 18 14 6.0578 4.2728 12.4834 19 1 5.2180 3.0497 12.5451 20 1 7.3327 4.0343 13.2067 21 1 5.3334 5.4038 13.1171 22 6 5.5745 0.8618 1.6575 23 16 4.5324 0.0610 0.4839 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.6607 2.7673 -1.4426 28 1 2.8829 1.0774 -1.9563 29 1 1.2569 1.8013 -1.9564 30 1 6.6074 2.8761 3.0426 31 1 5.1399 3.8812 2.9761 32 1 6.9276 3.5222 5.7156 33 1 5.4596 4.5266 5.6488 34 1 4.4736 3.2073 7.5028 35 1 5.9418 2.2032 7.5690 36 1 7.2952 4.2148 8.0874 37 1 5.8274 5.2196 8.0214 38 1 7.5072 6.2997 11.1155 39 1 6.5580 0.5350 1.9611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161909021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:53 Heat of formation + Delta-G solvation = -21.298340 kcal Electronic energy + Delta-G solvation = -18622.323238 eV Core-core repulsion = 15589.692778 eV Total energy + Delta-G solvation = -3032.630460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21918 -38.54606 -34.43961 -33.34135 -32.01162 -30.94388 -28.05935 -27.36688 -27.29872 -25.31088 -23.40162 -22.07465 -20.35556 -19.96019 -18.19579 -16.75329 -16.51184 -16.40462 -15.92894 -15.67559 -15.01515 -14.63669 -14.58260 -14.39128 -13.74323 -13.49385 -13.34856 -13.21523 -13.03489 -12.64394 -12.48271 -12.11165 -11.86626 -11.68812 -11.53374 -11.40081 -10.89481 -10.88795 -10.51785 -10.28638 -9.89299 -9.85173 -9.78126 -9.60020 -9.30161 -9.10556 -8.84605 -8.36451 -7.40704 -6.01301 -4.03566 0.40731 1.12907 1.51401 1.67942 2.73872 2.91661 3.05657 3.31532 3.38918 3.43967 3.96559 4.41459 4.46122 4.62045 4.69067 4.83666 4.88681 4.98880 5.03752 5.19063 5.27644 5.28988 5.33957 5.34715 5.48963 5.52780 5.64908 5.65282 5.84221 6.14489 6.56972 6.59968 6.73313 7.03133 7.49371 7.64464 7.76507 7.97954 8.39997 9.03154 9.60614 11.10105 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.002205 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.877667 B =12692.555594 C =13093.952364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.163 3.837 4 H 0.093 0.907 5 C -0.168 4.168 6 C 0.041 3.959 7 N -0.452 5.452 8 C 0.088 3.912 9 C -0.017 4.017 10 S -0.260 6.260 11 C -0.075 4.075 12 C -0.094 4.094 13 C 0.027 3.973 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.245 4.245 23 S 0.163 5.837 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 -10.202 -27.121 30.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.101 3.899 4 H 0.111 0.889 5 C -0.226 4.226 6 C -0.237 4.237 7 N -0.168 5.168 8 C -0.045 4.045 9 C -0.168 4.168 10 S -0.031 6.031 11 C -0.223 4.223 12 C -0.133 4.133 13 C -0.012 4.012 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.387 4.387 23 S 0.418 5.582 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.159 -11.571 -27.267 31.005 hybrid contribution 0.822 1.746 1.383 2.374 sum -8.337 -9.826 -25.884 28.914 Atomic orbital electron populations 1.22859 0.79797 1.03323 1.00476 1.87911 1.20641 1.26338 1.95103 1.20290 0.88557 0.86105 0.94903 0.88889 1.22286 1.03271 1.02414 0.94678 1.26597 1.01342 0.95864 0.99942 1.65937 1.14313 1.28214 1.08303 1.19356 0.90040 0.96320 0.98771 1.21729 1.02298 1.00089 0.92662 1.87116 1.73080 1.43302 0.99598 1.23664 1.01819 0.98359 0.98431 1.21462 1.01353 1.01332 0.89198 1.19109 0.95686 0.93247 0.93123 1.21263 1.32074 1.11285 0.91133 0.92489 1.25029 0.95148 0.95061 0.99277 1.69970 1.35043 1.15963 1.32568 0.86514 0.78069 0.78390 0.84921 1.19678 1.20998 1.20984 1.26992 1.06509 1.00323 1.04849 1.83947 1.08108 1.27883 1.38304 0.93410 0.93603 0.89066 0.90732 0.91308 0.91043 0.88549 0.88457 0.90453 0.90418 0.92370 0.92394 0.96406 0.96400 0.93029 0.80093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.49 10.17 -35.23 -0.36 -3.85 16 3 C 0.16 1.46 3.24 -27.88 -0.09 1.37 16 4 H 0.09 0.81 7.79 -51.93 -0.40 0.41 16 5 C -0.17 -1.11 9.51 37.16 0.35 -0.75 16 6 C 0.04 0.47 6.35 -13.46 -0.09 0.38 16 7 N -0.45 -6.13 10.53 -8.06 -0.08 -6.22 16 8 C 0.09 1.14 6.00 -84.23 -0.51 0.64 16 9 C -0.02 -0.23 6.36 36.01 0.23 0.00 16 10 S -0.26 -4.26 21.72 -107.50 -2.33 -6.59 16 11 C -0.07 -1.31 5.94 37.16 0.22 -1.09 16 12 C -0.09 -2.01 5.16 -26.74 -0.14 -2.14 16 13 C 0.03 0.71 4.97 -27.89 -0.14 0.57 16 14 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.24 -2.68 11.13 29.12 0.32 -2.36 16 23 S 0.16 1.62 23.00 -107.50 -2.47 -0.86 16 24 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 25 H 0.05 0.20 7.87 -51.93 -0.41 -0.21 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 30 H 0.10 1.06 8.12 -51.92 -0.42 0.64 16 31 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -32.35 358.88 -9.53 -41.88 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -6.25 Total: -4.56 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 0.85 Total: -15.77 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.65 Total: -32.51 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.36 Total: -3.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -4.81 Total: -7.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.35 -9.53 -41.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161909021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.583 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds