Wall clock time and date at job start Fri Apr 10 2020 20:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 120.00099 * 2 1 4 4 H 1.48501 * 109.46878 * 270.00130 * 3 2 1 5 5 H 1.48501 * 109.46801 * 29.99659 * 3 2 1 6 6 H 1.48493 * 109.47206 * 149.99914 * 3 2 1 7 7 C 1.38799 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00134 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00269 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00258 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47219 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00006 * 180.02562 * 11 10 9 14 14 C 1.46410 * 119.67305 * 337.12938 * 13 11 10 15 15 C 1.53230 * 109.53410 * 115.38391 * 14 13 11 16 16 S 1.81750 * 108.84338 * 57.55933 * 15 14 13 17 17 C 1.81816 * 102.24389 * 305.42248 * 16 15 14 18 18 H 1.09000 * 110.26975 * 174.92325 * 17 16 15 19 19 C 1.52171 * 108.55673 * 295.20330 * 17 16 15 20 20 C 1.52953 * 109.36870 * 178.72549 * 19 17 16 21 21 C 1.53026 * 109.42423 * 299.80487 * 20 19 17 22 22 C 1.52987 * 109.37112 * 60.17589 * 21 20 19 23 23 C 1.46305 * 119.67678 * 157.40466 * 13 11 10 24 24 H 1.09000 * 109.35669 * 125.02763 * 23 13 11 25 25 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46783 * 59.99883 * 10 9 7 27 27 H 1.08996 * 109.46970 * 300.00317 * 10 9 7 28 28 H 1.08998 * 109.45997 * 235.40127 * 14 13 11 29 29 H 1.08997 * 109.46142 * 355.36047 * 14 13 11 30 30 H 1.08997 * 109.57642 * 297.74652 * 15 14 13 31 31 H 1.09004 * 109.68068 * 177.42668 * 15 14 13 32 32 H 1.09004 * 109.55695 * 58.76183 * 19 17 16 33 33 H 1.08998 * 109.54661 * 298.69086 * 19 17 16 34 34 H 1.09001 * 109.47943 * 179.81363 * 20 19 17 35 35 H 1.09000 * 109.47495 * 59.78462 * 20 19 17 36 36 H 1.09005 * 109.48228 * 300.21193 * 21 20 19 37 37 H 1.08991 * 109.50478 * 180.16215 * 21 20 19 38 38 H 1.08998 * 109.44433 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.42193 * 60.06087 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7722 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5731 -3.2324 -0.0010 12 8 6.3440 -2.2962 -0.0015 13 7 6.0458 -4.4946 -0.0016 14 6 5.2027 -5.5845 0.4933 15 6 4.8849 -6.5482 -0.6548 16 16 6.4456 -7.1671 -1.3508 17 6 7.3260 -5.6277 -1.7521 18 1 8.3338 -5.8496 -2.1032 19 6 6.5519 -4.8963 -2.8389 20 6 7.2602 -3.5813 -3.1687 21 6 7.3220 -2.7079 -1.9137 22 6 8.0997 -3.4439 -0.8211 23 6 7.3985 -4.7613 -0.4910 24 1 7.9634 -5.2887 0.2777 25 1 -0.4850 0.8400 0.0004 26 1 3.6434 -3.4317 -0.8896 27 1 3.6441 -3.4313 0.8903 28 1 5.7291 -6.1211 1.2827 29 1 4.2744 -5.1739 0.8904 30 1 4.3232 -6.0232 -1.4274 31 1 4.2954 -7.3847 -0.2794 32 1 5.5413 -4.6862 -2.4886 33 1 6.5042 -5.5172 -3.7334 34 1 6.7089 -3.0574 -3.9495 35 1 8.2720 -3.7907 -3.5160 36 1 6.3103 -2.5019 -1.5640 37 1 7.8240 -1.7693 -2.1480 38 1 8.1448 -2.8226 0.0733 39 1 9.1112 -3.6490 -1.1717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175436749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:57 Heat of formation + Delta-G solvation = 8.968150 kcal Electronic energy + Delta-G solvation = -21562.296806 eV Core-core repulsion = 18530.978800 eV Total energy + Delta-G solvation = -3031.318007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34157 -37.28583 -35.89108 -32.49602 -31.62050 -30.57951 -30.38451 -28.24002 -25.66652 -23.79527 -22.97980 -22.65555 -20.75267 -18.78686 -17.78269 -17.06821 -16.46122 -16.00217 -15.83536 -15.36874 -15.02785 -14.86835 -14.08995 -13.80546 -13.57455 -13.37993 -13.31142 -12.98999 -12.84891 -12.84353 -12.51462 -12.16993 -12.01221 -11.69536 -11.32361 -11.13402 -11.05918 -10.68591 -10.58635 -10.34334 -10.00213 -9.89370 -9.60382 -9.05435 -9.03241 -8.58107 -8.52318 -7.82714 -6.99206 -6.34212 -4.06927 1.53520 2.27436 2.58249 2.67032 3.08535 3.28277 3.44806 3.51048 4.27104 4.36877 4.45859 4.58130 4.66589 4.80098 4.87216 5.03218 5.04936 5.05905 5.16420 5.18290 5.31846 5.36997 5.37969 5.48820 5.54303 5.63338 5.67504 5.86132 5.91784 5.95324 6.06395 6.18092 6.31710 6.40614 6.67968 6.75698 7.31838 7.88618 8.22112 8.36099 9.11744 10.75013 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.004868 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.286572 B = 5750.865978 C = 6313.456696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.128 4.128 11 C 0.524 3.476 12 O -0.474 6.474 13 N -0.623 5.623 14 C 0.112 3.888 15 C -0.101 4.101 16 S -0.269 6.269 17 C -0.057 4.057 18 H 0.116 0.884 19 C -0.110 4.110 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.108 4.108 23 C 0.158 3.842 24 H 0.081 0.919 25 H 0.271 0.729 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.057 -13.117 -2.239 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.278 4.278 11 C 0.314 3.686 12 O -0.348 6.348 13 N -0.359 5.359 14 C -0.013 4.013 15 C -0.251 4.251 16 S -0.038 6.038 17 C -0.186 4.186 18 H 0.134 0.866 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.187 4.187 22 C -0.147 4.147 23 C 0.053 3.947 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.341 -12.764 -2.369 20.097 hybrid contribution -1.274 0.640 -0.029 1.426 sum 14.067 -12.123 -2.398 18.725 Atomic orbital electron populations 1.69929 1.05928 1.27823 1.47863 1.24703 0.94430 0.98929 0.93129 0.86751 0.81895 0.83359 0.79932 1.19213 1.19908 1.15931 1.22280 0.88122 0.97514 1.59016 0.89413 1.84733 1.09573 0.99785 1.97405 1.23453 0.94455 1.04408 1.05503 1.19993 0.90286 0.81956 0.76407 1.90686 1.57801 1.43229 1.43073 1.47633 1.15128 1.07028 1.66122 1.21762 0.96347 0.88140 0.95033 1.23901 0.96858 1.02946 1.01372 1.86779 1.19699 1.15228 1.82127 1.23582 1.01896 0.94168 0.98963 0.86606 1.21629 0.99350 0.96663 0.97279 1.21688 0.99898 0.95533 0.98986 1.22711 1.05534 0.97472 0.92950 1.21894 0.97050 0.94232 1.01543 1.21145 0.82951 0.97102 0.93512 0.90147 0.91886 0.88752 0.88577 0.89827 0.88164 0.89111 0.86693 0.91598 0.91169 0.91817 0.92658 0.86803 0.92190 0.88515 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.97 55.49 0.78 -25.24 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.23 27.74 -169.99 -4.72 16.52 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.24 -5.80 6.74 56.52 0.38 -5.41 16 7 C -0.52 -14.53 10.04 30.94 0.31 -14.22 16 8 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 10 C -0.13 -2.31 5.10 36.00 0.18 -2.12 16 11 C 0.52 8.43 5.49 -10.99 -0.06 8.37 16 12 O -0.47 -8.70 9.68 5.56 0.05 -8.65 16 13 N -0.62 -7.80 2.09 -166.18 -0.35 -8.14 16 14 C 0.11 1.13 6.03 -3.97 -0.02 1.11 16 15 C -0.10 -0.97 6.21 37.28 0.23 -0.73 16 16 S -0.27 -2.85 21.67 -107.50 -2.33 -5.18 16 17 C -0.06 -0.60 2.77 -27.06 -0.08 -0.67 16 18 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.11 -1.26 4.89 -27.18 -0.13 -1.39 16 20 C -0.12 -1.45 5.91 -26.74 -0.16 -1.61 16 21 C -0.15 -2.13 4.66 -26.72 -0.12 -2.26 16 22 C -0.11 -1.37 4.87 -26.82 -0.13 -1.50 16 23 C 0.16 1.82 2.91 -68.03 -0.20 1.62 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 27 H 0.10 1.62 6.85 -51.92 -0.36 1.27 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.99 5.90 -51.93 -0.31 0.69 16 30 H 0.09 0.95 7.21 -51.93 -0.37 0.57 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.86 6.25 -51.93 -0.32 0.54 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.11 1.96 3.77 -57.07 -0.22 1.75 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.42 6.35 -51.93 -0.33 1.09 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -30.26 313.14 -9.82 -40.08 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.71 Total: 2.02 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.27 Total: -10.75 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.43 Total: -33.39 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.05 Total: -8.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.72 Total: 16.52 kcal Atomic # 16 Polarization: -6.23 SS G_CDS: -4.32 Total: -10.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.26 -9.82 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175436749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.048 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds