Wall clock time and date at job start Fri Apr 10 2020 20:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99749 * 2 1 4 4 H 1.48502 * 109.47310 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47138 * 119.99988 * 3 2 1 6 6 H 1.48504 * 109.46894 * 239.99963 * 3 2 1 7 7 C 1.38796 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99747 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00130 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47125 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46916 * 179.97438 * 11 10 9 13 13 N 1.46908 * 109.46687 * 174.86937 * 12 11 10 14 14 C 1.48507 * 110.99636 * 175.66172 * 13 12 11 15 15 C 1.54266 * 104.73978 * 200.66376 * 14 13 12 16 16 H 1.08992 * 112.65619 * 147.05664 * 15 14 13 17 17 C 1.54394 * 108.77688 * 272.74015 * 15 14 13 18 18 O 1.44377 * 104.92436 * 87.16086 * 17 15 14 19 19 C 1.44379 * 105.26000 * 40.74858 * 18 17 15 20 20 C 1.55476 * 104.81256 * 24.01079 * 15 14 13 21 21 C 1.50701 * 112.83018 * 123.54589 * 20 15 14 22 22 O 1.20831 * 119.99809 * 359.97438 * 21 20 15 23 23 O 1.34228 * 120.00689 * 179.97438 * 21 20 15 24 24 C 1.48503 * 111.00147 * 60.26927 * 13 12 11 25 25 H 0.96999 * 120.00072 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46700 * 300.00069 * 10 9 7 27 27 H 1.09000 * 109.47252 * 59.99396 * 10 9 7 28 28 H 1.09002 * 109.47026 * 299.99709 * 11 10 9 29 29 H 1.09000 * 109.47393 * 59.99672 * 11 10 9 30 30 H 1.08997 * 109.47024 * 294.86427 * 12 11 10 31 31 H 1.08998 * 109.47322 * 54.87327 * 12 11 10 32 32 H 1.09003 * 110.38580 * 319.48021 * 14 13 12 33 33 H 1.09006 * 110.38259 * 81.73343 * 14 13 12 34 34 H 1.09001 * 110.34499 * 206.02762 * 17 15 14 35 35 H 1.09001 * 110.34857 * 328.29785 * 17 15 14 36 36 H 1.09006 * 110.35062 * 78.09121 * 19 18 17 37 37 H 1.08999 * 110.35072 * 200.26592 * 19 18 17 38 38 H 0.96698 * 117.00427 * 179.97438 * 23 21 20 39 39 H 1.08998 * 110.38260 * 278.13903 * 24 13 12 40 40 H 1.08999 * 110.38303 * 40.50126 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3242 0.0012 12 6 3.1516 -6.3076 0.0005 13 7 2.6400 -7.6791 0.1250 14 6 3.7421 -8.6693 0.0236 15 6 3.0473 -9.9918 -0.3615 16 1 3.6670 -10.6211 -1.0001 17 6 2.5986 -10.7115 0.9286 18 8 1.2912 -10.1726 1.2195 19 6 0.6279 -10.0736 -0.0591 20 6 1.7203 -9.5588 -1.0462 21 6 1.5722 -10.1155 -2.4388 22 8 2.4389 -10.8171 -2.9043 23 8 0.4777 -9.8319 -3.1622 24 6 1.7414 -8.0168 -1.0080 25 1 -0.4850 -0.8400 0.0004 26 1 3.1245 -3.7312 -0.8895 27 1 3.1246 -3.7313 0.8905 28 1 1.3711 -5.4839 0.8914 29 1 1.3705 -5.4846 -0.8885 30 1 3.7069 -6.2103 -0.9323 31 1 3.8106 -6.0880 0.8405 32 1 4.4493 -8.3724 -0.7509 33 1 4.2507 -8.7708 0.9824 34 1 2.5368 -11.7867 0.7608 35 1 3.2885 -10.4934 1.7438 36 1 0.2683 -11.0526 -0.3764 37 1 -0.1997 -9.3665 -0.0031 38 1 0.4278 -10.2114 -4.0502 39 1 0.7394 -7.6278 -0.8269 40 1 2.1409 -7.6194 -1.9410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:16 Heat of formation + Delta-G solvation = -164.114875 kcal Electronic energy + Delta-G solvation = -22541.405777 eV Core-core repulsion = 19059.829456 eV Total energy + Delta-G solvation = -3481.576321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.39151 -40.51342 -38.28103 -37.27832 -35.20559 -34.74288 -32.52869 -31.83235 -27.69959 -27.25348 -26.86069 -25.24687 -24.24970 -22.61363 -21.80512 -20.68760 -20.22199 -19.19210 -18.49456 -17.34788 -17.08108 -16.85236 -16.39792 -16.19729 -15.99504 -15.76686 -15.55556 -15.18606 -15.01288 -14.75368 -14.55483 -14.12035 -13.93223 -13.48201 -13.11397 -12.90254 -12.78055 -12.73610 -12.60312 -12.40294 -12.36358 -12.21713 -11.96772 -11.87938 -11.78671 -11.62122 -11.22163 -11.10014 -10.70150 -10.40980 -9.56566 -8.93846 -8.86297 -6.27976 0.92299 1.41354 1.57864 1.58311 1.79181 1.80399 2.33049 2.84901 2.89395 2.99011 3.00308 3.14245 3.26902 3.63041 3.86358 3.89986 3.96186 4.06437 4.11715 4.19166 4.30326 4.39998 4.46850 4.48583 4.58162 4.61972 4.69533 4.69592 4.74558 4.75896 4.82249 4.88193 5.06606 5.18791 5.41968 5.62466 5.66625 5.77825 5.87945 6.16355 6.82537 7.04593 8.50852 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.002810 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.770167 B = 9962.166927 C =10248.003278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.133 2.867 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.607 4.607 8 H 0.065 0.935 9 S -0.242 6.242 10 C -0.067 4.067 11 C -0.083 4.083 12 C 0.060 3.940 13 N -0.504 5.504 14 C 0.038 3.962 15 C -0.110 4.110 16 H 0.117 0.883 17 C 0.056 3.944 18 O -0.371 6.371 19 C 0.076 3.924 20 C -0.098 4.098 21 C 0.512 3.488 22 O -0.534 6.534 23 O -0.503 6.503 24 C 0.054 3.946 25 H 0.263 0.737 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.432 0.568 39 H 0.096 0.904 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 -24.540 -2.986 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.221 4.221 3 Si 0.951 3.049 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.754 4.754 8 H 0.083 0.917 9 S -0.014 6.014 10 C -0.217 4.217 11 C -0.122 4.122 12 C -0.069 4.069 13 N -0.227 5.227 14 C -0.090 4.090 15 C -0.129 4.129 16 H 0.135 0.865 17 C -0.021 4.021 18 O -0.289 6.289 19 C -0.002 4.002 20 C -0.100 4.100 21 C 0.355 3.645 22 O -0.424 6.424 23 O -0.317 6.317 24 C -0.074 4.074 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.295 0.705 39 H 0.114 0.886 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.679 -23.090 -1.989 23.643 hybrid contribution 1.800 -1.409 -1.756 2.883 sum 6.480 -24.499 -3.745 25.617 Atomic orbital electron populations 1.70915 1.07776 1.30196 1.45802 1.27769 0.96419 1.06197 0.91733 0.82749 0.74020 0.69825 0.78292 1.20149 1.19046 1.19073 1.23911 0.95895 0.92797 1.62841 0.91684 1.84211 1.16586 1.03123 1.97461 1.23025 0.98805 0.96685 1.03181 1.21179 0.98037 0.90210 1.02781 1.22198 0.96014 0.87317 1.01396 1.65456 1.14710 1.02180 1.40390 1.23277 0.93021 0.90217 1.02466 1.23348 0.94333 0.97898 0.97330 0.86513 1.23589 0.85032 0.97268 0.96192 1.89196 1.27807 1.85108 1.26782 1.23598 0.93611 1.01312 0.81638 1.22700 0.99981 0.97632 0.89707 1.22508 0.78616 0.76305 0.87117 1.90714 1.42512 1.37139 1.72020 1.84516 1.41941 1.71266 1.33985 1.23026 1.00163 0.90815 0.93397 0.92583 0.91842 0.91557 0.91261 0.91881 0.94030 0.89447 0.93097 0.87772 0.90835 0.87133 0.90868 0.87368 0.70510 0.88599 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.26 13.67 21.65 0.30 -56.96 16 2 C -0.02 -1.03 5.49 84.86 0.47 -0.57 16 3 Si 1.13 49.79 29.92 68.60 2.05 51.84 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.61 -35.57 9.50 67.95 0.65 -34.92 16 8 H 0.06 3.69 7.80 -2.91 -0.02 3.67 16 9 S -0.24 -12.80 20.46 -56.49 -1.16 -13.96 16 10 C -0.07 -2.67 5.67 71.98 0.41 -2.27 16 11 C -0.08 -2.60 4.95 30.59 0.15 -2.45 16 12 C 0.06 1.47 4.91 86.30 0.42 1.90 16 13 N -0.50 -11.06 5.32 -882.24 -4.69 -15.76 16 14 C 0.04 0.65 5.90 86.42 0.51 1.16 16 15 C -0.11 -1.79 3.71 -9.04 -0.03 -1.82 16 16 H 0.12 1.89 6.96 -2.39 -0.02 1.87 16 17 C 0.06 0.83 7.05 72.46 0.51 1.34 16 18 O -0.37 -7.64 11.53 -148.98 -1.72 -9.35 16 19 C 0.08 1.30 6.70 73.01 0.49 1.79 16 20 C -0.10 -1.74 1.07 -50.62 -0.05 -1.80 16 21 C 0.51 9.10 7.19 71.24 0.51 9.62 16 22 O -0.53 -11.94 16.38 21.95 0.36 -11.58 16 23 O -0.50 -6.60 13.42 -51.40 -0.69 -7.29 16 24 C 0.05 1.13 4.38 86.42 0.38 1.51 16 25 H 0.26 16.93 7.13 -92.71 -0.66 16.27 16 26 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 1.98 7.21 -2.39 -0.02 1.96 16 30 H 0.04 0.97 7.97 -2.39 -0.02 0.95 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 0.87 7.91 -2.39 -0.02 0.85 16 33 H 0.10 1.55 7.50 -2.38 -0.02 1.53 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 1.40 7.50 -2.39 -0.02 1.38 16 36 H 0.07 1.03 8.00 -2.38 -0.02 1.01 16 37 H 0.11 1.82 7.56 -2.39 -0.02 1.80 16 38 H 0.43 1.86 9.10 -74.06 -0.67 1.19 16 39 H 0.10 2.10 7.18 -2.39 -0.02 2.08 16 40 H 0.05 0.99 7.83 -2.39 -0.02 0.98 16 Total: -1.00 -74.53 338.91 -0.66 -75.19 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.49 Total: 14.37 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.41 Total: -26.51 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -4.40 Total: -72.72 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -2.05 Total: -28.22 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.84 kcal Atomic # 16 Polarization: -12.80 SS G_CDS: -1.16 Total: -13.96 kcal Total: -74.53 -0.66 -75.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.928 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds