Wall clock time and date at job start Fri Apr 10 2020 20:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35671 * 117.00235 * 2 1 4 4 C 1.39125 * 119.86169 * 180.02562 * 3 2 1 5 5 C 1.36594 * 120.13339 * 179.97438 * 4 3 2 6 6 C 1.40259 * 119.86554 * 359.97438 * 5 4 3 7 7 C 1.46406 * 120.13723 * 179.97438 * 6 5 4 8 8 C 1.37876 * 119.99695 * 146.61782 * 7 6 5 9 9 C 1.43194 * 120.00059 * 352.01653 * 8 7 6 10 10 N 6.06480 * 88.96704 * 339.39670 * 2 1 3 11 11 C 1.46967 * 119.99698 * 172.01274 * 8 7 6 12 12 O 1.21571 * 120.00244 * 0.02562 * 11 8 7 13 13 O 1.34829 * 120.00152 * 180.02562 * 11 8 7 14 14 C 1.45192 * 117.00292 * 179.97438 * 13 11 8 15 15 C 1.53000 * 109.47450 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47359 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00385 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00101 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00100 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46648 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47053 * 119.99919 * 20 18 16 23 23 H 1.48500 * 109.47264 * 240.00199 * 20 18 16 24 24 C 1.40263 * 119.72599 * 0.27464 * 6 5 4 25 25 C 1.36591 * 119.86070 * 359.46217 * 24 6 5 26 26 H 1.08998 * 109.47303 * 59.99367 * 1 2 3 27 27 H 1.08993 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46584 * 299.99715 * 1 2 3 29 29 H 1.07999 * 119.93169 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.06529 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.00053 * 326.33784 * 7 6 5 32 32 H 1.08997 * 109.47460 * 300.00249 * 14 13 11 33 33 H 1.09004 * 109.46784 * 60.00205 * 14 13 11 34 34 H 1.08997 * 109.47104 * 300.00604 * 15 14 13 35 35 H 1.09005 * 109.46441 * 60.00030 * 15 14 13 36 36 H 0.96998 * 120.00251 * 179.97438 * 19 18 16 37 37 H 1.08008 * 120.06858 * 179.70600 * 24 6 5 38 38 H 1.07998 * 119.93344 * 180.25869 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4345 1.2782 -0.0005 5 6 4.0604 2.4923 -0.0011 6 6 3.2994 3.6705 -0.0016 7 6 3.9641 4.9749 -0.0016 8 6 3.3890 6.0417 -0.6591 9 6 2.2352 5.8376 -1.4823 10 7 1.3197 5.6760 -2.1338 11 6 3.9600 7.3881 -0.5148 12 8 4.9398 7.5613 0.1838 13 8 3.3973 8.4315 -1.1573 14 6 4.0140 9.7323 -0.9685 15 6 3.2432 10.7834 -1.7697 16 6 3.8837 12.1333 -1.5742 17 1 4.7533 12.2320 -0.9413 18 6 3.3589 13.2428 -2.2023 19 7 2.2996 13.1229 -2.9725 20 14 4.1532 14.9162 -1.9605 21 1 5.3231 14.7826 -1.0558 22 1 4.6013 15.4458 -3.2735 23 1 3.1669 15.8503 -1.3605 24 6 1.8989 3.5938 0.0042 25 6 1.2846 2.3738 -0.0007 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 4.0194 0.3703 -0.0005 30 1 5.1392 2.5449 -0.0011 31 1 4.9027 5.1027 0.5172 32 1 3.9933 9.9941 0.0894 33 1 5.0472 9.6981 -1.3142 34 1 3.2643 10.5213 -2.8275 35 1 2.2099 10.8175 -1.4244 36 1 1.9301 13.9035 -3.4141 37 1 1.3074 4.4975 0.0086 38 1 0.2063 2.3134 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042359921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:09 Heat of formation + Delta-G solvation = -54.657626 kcal Electronic energy + Delta-G solvation = -22205.831832 eV Core-core repulsion = 18593.557983 eV Total energy + Delta-G solvation = -3612.273850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74901 -40.02875 -38.43215 -36.68713 -36.23807 -33.82197 -33.34291 -31.76313 -30.57828 -29.85706 -27.87363 -25.57389 -24.50288 -23.12794 -21.85647 -21.57172 -20.82248 -18.90004 -18.41248 -16.90186 -16.60958 -16.26991 -16.11821 -16.00646 -15.86002 -15.32051 -14.69295 -14.51208 -14.30537 -14.11156 -13.68884 -13.39182 -13.09758 -13.04630 -12.85294 -12.61209 -12.41202 -12.36117 -12.12858 -11.73928 -11.29344 -11.26427 -11.05957 -10.79594 -10.74194 -10.42596 -10.02421 -9.67742 -9.65766 -9.59828 -9.28979 -8.44665 -8.35415 -6.09826 -4.14595 -0.12117 0.92408 1.25552 2.54032 2.58463 2.73460 3.05851 3.23831 3.28008 3.35505 3.40226 3.54443 3.79114 4.23644 4.31233 4.34527 4.42501 4.59118 4.67663 4.74081 4.89499 4.99477 5.04976 5.16968 5.26667 5.39720 5.47600 5.54873 5.76240 5.87118 6.02352 6.04210 6.07127 6.17020 6.61333 6.82553 6.83864 7.44785 7.55828 7.62107 7.84987 8.06644 8.23335 8.91363 9.49883 11.01675 Molecular weight = 301.11amu Principal moments of inertia in cm(-1) A = 0.037174 B = 0.002290 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.036509 B =12225.163111 C =12826.380548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.152 3.848 4 C -0.158 4.158 5 C -0.038 4.038 6 C -0.143 4.143 7 C 0.071 3.929 8 C -0.100 4.100 9 C 0.257 3.743 10 N -0.404 5.404 11 C 0.513 3.487 12 O -0.507 6.507 13 O -0.349 6.349 14 C 0.076 3.924 15 C 0.023 3.977 16 C -0.525 4.525 17 H 0.061 0.939 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.043 4.043 25 C -0.210 4.210 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.131 0.869 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -27.546 8.156 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.106 3.894 4 C -0.177 4.177 5 C -0.056 4.056 6 C -0.143 4.143 7 C 0.049 3.951 8 C -0.105 4.105 9 C -0.057 4.057 10 N -0.080 5.080 11 C 0.357 3.643 12 O -0.398 6.398 13 O -0.265 6.265 14 C 0.004 3.996 15 C -0.014 4.014 16 C -0.564 4.564 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.061 4.061 25 C -0.229 4.229 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.184 0.816 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.166 -27.744 7.213 28.690 hybrid contribution 0.437 1.346 0.314 1.450 sum -0.729 -26.398 7.527 27.460 Atomic orbital electron populations 1.23159 0.77749 1.04357 1.01866 1.86030 1.21963 1.26877 1.87694 1.19425 0.92518 0.84212 0.93278 1.20163 0.91202 0.99038 1.07247 1.20969 1.00247 0.90239 0.94145 1.18891 0.93299 0.92702 1.09406 1.23103 0.96209 0.88422 0.87396 1.17527 0.95526 0.92788 1.04618 1.25134 0.92936 0.93937 0.93724 1.81200 1.10301 1.07378 1.09167 1.20319 0.81350 0.85124 0.77507 1.90862 1.25384 1.85606 1.37962 1.86661 1.56312 1.18732 1.64773 1.23737 0.97586 0.76653 1.01652 1.19192 0.96137 0.90437 0.95666 1.21000 1.13863 0.91646 1.29859 0.92084 1.25003 0.94944 0.99418 0.94896 1.69991 1.22093 1.30234 1.30442 0.86408 0.79341 0.83478 0.78036 1.19540 1.20852 1.20852 1.21196 0.93475 0.98024 0.93432 1.20973 1.00646 0.92006 1.09253 0.92199 0.87878 0.92239 0.84383 0.83945 0.81583 0.91894 0.91880 0.95316 0.95339 0.92748 0.85117 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 101.05 0.99 1.10 16 2 O -0.31 -2.50 10.48 -18.72 -0.20 -2.69 16 3 C 0.15 1.29 6.70 -38.92 -0.26 1.03 16 4 C -0.16 -1.17 9.92 -39.85 -0.40 -1.57 16 5 C -0.04 -0.26 9.75 -39.42 -0.38 -0.65 16 6 C -0.14 -1.27 5.51 -105.09 -0.58 -1.85 16 7 C 0.07 0.67 9.43 -36.43 -0.34 0.32 16 8 C -0.10 -1.31 5.81 -104.57 -0.61 -1.92 16 9 C 0.26 3.82 11.38 -22.50 -0.26 3.56 16 10 N -0.40 -6.65 18.20 41.81 0.76 -5.89 16 11 C 0.51 8.61 7.87 34.27 0.27 8.88 16 12 O -0.51 -9.00 16.10 -19.32 -0.31 -9.31 16 13 O -0.35 -7.05 9.76 -40.85 -0.40 -7.45 16 14 C 0.08 1.67 5.42 37.16 0.20 1.87 16 15 C 0.02 0.60 5.35 -27.89 -0.15 0.45 16 16 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 17 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 20 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.04 -0.42 8.25 -39.42 -0.33 -0.75 16 25 C -0.21 -1.84 8.97 -39.85 -0.36 -2.20 16 26 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 29 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.17 1.20 7.61 -52.49 -0.40 0.80 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.13 1.39 5.95 -52.48 -0.31 1.08 16 38 H 0.13 0.96 6.27 -52.49 -0.33 0.63 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -33.59 345.43 -6.17 -39.76 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -4.34 Total: -4.94 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.61 Total: -5.19 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 1.50 Total: -31.81 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.91 Total: -19.45 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.59 -6.17 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.900 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds