Wall clock time and date at job start Fri Apr 10 2020 20:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48494 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46664 * 299.99837 * 3 2 1 6 6 H 1.48497 * 109.47236 * 59.99455 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47592 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46949 * 180.02562 * 14 13 11 16 16 C 1.38125 * 119.96717 * 115.00062 * 15 14 13 17 17 C 1.39965 * 118.92107 * 179.97438 * 16 15 14 18 18 O 1.22095 * 120.52248 * 180.02562 * 17 16 15 19 19 N 1.35018 * 118.95927 * 0.02562 * 17 16 15 20 20 C 1.36181 * 119.65753 * 179.97438 * 19 17 16 21 21 C 1.35201 * 120.74341 * 179.97438 * 20 19 17 22 22 C 1.40198 * 120.15385 * 0.03598 * 21 20 19 23 23 C 1.36281 * 119.55953 * 359.97438 * 22 21 20 24 24 C 1.36702 * 119.87640 * 0.02562 * 19 17 16 25 25 N 1.32381 * 119.97091 * 294.72279 * 15 14 13 26 26 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 28 28 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 29 29 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 30 30 H 1.09004 * 109.47368 * 300.00063 * 10 9 7 31 31 H 0.97010 * 119.99854 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46609 * 60.00363 * 14 13 11 33 33 H 1.09000 * 109.47175 * 300.00158 * 14 13 11 34 34 H 1.07998 * 120.54198 * 359.95723 * 16 15 14 35 35 H 1.08004 * 119.63295 * 0.02562 * 20 19 17 36 36 H 1.07994 * 119.92142 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.21798 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.27169 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4329 -7.4031 0.0008 15 6 2.4123 -8.5486 0.0009 16 6 2.4762 -9.4016 1.0855 17 6 3.3934 -10.4585 1.0622 18 8 3.4743 -11.2303 2.0048 19 7 4.1875 -10.6113 -0.0191 20 6 5.0854 -11.6346 -0.0565 21 6 5.8909 -11.8083 -1.1284 22 6 5.8106 -10.9313 -2.2192 23 6 4.9155 -9.9040 -2.1915 24 6 4.0863 -9.7393 -1.0669 25 7 3.2066 -8.7397 -1.0407 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8904 30 1 2.8719 -3.6044 -0.8895 31 1 3.1356 -6.1345 0.0004 32 1 0.8061 -7.4607 -0.8890 33 1 0.8066 -7.4610 0.8910 34 1 1.8292 -9.2552 1.9377 35 1 5.1543 -12.3154 0.7790 36 1 6.5984 -12.6240 -1.1439 37 1 6.4532 -11.0694 -3.0761 38 1 4.8437 -9.2218 -3.0257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565063243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:54:15 Heat of formation + Delta-G solvation = -0.531012 kcal Electronic energy + Delta-G solvation = -22694.806691 eV Core-core repulsion = 19117.172699 eV Total energy + Delta-G solvation = -3577.633992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.08751 -39.29509 -38.73735 -37.96368 -34.79536 -34.21524 -33.41781 -32.11700 -30.91618 -30.24433 -27.87721 -25.55340 -25.43201 -24.03483 -22.98471 -21.46516 -19.83391 -19.34666 -19.05307 -17.92906 -17.03579 -16.86474 -16.14308 -16.06989 -15.59735 -15.49656 -15.26833 -14.81322 -14.51100 -14.38587 -13.85807 -13.54525 -13.39738 -13.05766 -12.76389 -12.62078 -12.50145 -12.14591 -11.92707 -11.21917 -11.13048 -10.92508 -10.74093 -10.56714 -10.40624 -10.01312 -9.93008 -9.64335 -9.15433 -8.98833 -8.81636 -8.29723 -8.17672 -5.93761 -3.97857 -0.36223 -0.01452 1.48192 1.66550 2.15901 3.22402 3.25942 3.34391 3.36886 3.41380 3.44738 3.66775 3.81499 3.90603 4.11811 4.29948 4.36662 4.49911 4.81442 4.89849 5.01873 5.20995 5.35685 5.41280 5.41570 5.45075 5.52590 5.63012 5.78744 5.92056 6.09266 6.26205 6.27975 6.62801 6.92077 7.27775 7.32303 7.77467 7.86421 7.89575 8.10031 8.41309 8.77317 9.10925 9.65527 11.17253 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.002461 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.076612 B =11373.149520 C =11913.607269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.533 6.533 13 N -0.735 5.735 14 C 0.169 3.831 15 C 0.201 3.799 16 C -0.314 4.314 17 C 0.509 3.491 18 O -0.533 6.533 19 N -0.429 5.429 20 C 0.098 3.902 21 C -0.168 4.168 22 C -0.036 4.036 23 C -0.132 4.132 24 C 0.390 3.610 25 N -0.530 5.530 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.400 0.600 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.162 0.838 35 H 0.181 0.819 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.786 -27.273 -4.920 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.301 3.699 12 O -0.408 6.408 13 N -0.390 5.390 14 C 0.045 3.955 15 C 0.072 3.928 16 C -0.341 4.341 17 C 0.315 3.685 18 O -0.412 6.412 19 N -0.132 5.132 20 C -0.025 4.025 21 C -0.189 4.189 22 C -0.060 4.060 23 C -0.152 4.152 24 C 0.147 3.853 25 N -0.254 5.254 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.491 -26.969 -4.809 30.537 hybrid contribution 0.967 0.281 0.657 1.202 sum 14.458 -26.688 -4.152 30.636 Atomic orbital electron populations 1.70011 1.06042 1.26442 1.50340 1.25032 0.94828 0.99232 0.95361 0.86535 0.79999 0.83864 0.77560 1.19766 1.21030 1.21046 1.21263 0.92966 0.91001 1.51169 0.92557 1.18915 0.93192 0.89341 0.98688 1.21865 1.00728 0.91627 1.02591 1.21596 0.88649 0.85363 0.74252 1.90680 1.14391 1.87461 1.48245 1.46070 1.10178 1.04514 1.78266 1.20116 0.91493 0.79737 1.04153 1.21574 0.90458 0.93388 0.87363 1.22704 1.07525 0.99932 1.03892 1.17211 0.82114 0.87841 0.81306 1.91002 1.70000 1.46555 1.33666 1.44462 1.28945 1.22403 1.17409 1.22361 0.88939 0.90393 1.00852 1.21067 1.01756 1.02765 0.93294 1.21590 0.94923 0.91436 0.98053 1.21065 0.95979 1.01099 0.97050 1.20635 0.92850 0.85010 0.86770 1.68829 1.09948 1.19042 1.27596 0.93021 0.95747 0.95763 0.90218 0.90100 0.76641 0.89170 0.89318 0.82028 0.80197 0.82353 0.82871 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 11 C 0.51 9.93 7.83 -10.99 -0.09 9.85 16 12 O -0.53 -12.53 15.98 5.56 0.09 -12.44 16 13 N -0.74 -10.74 5.55 -61.47 -0.34 -11.08 16 14 C 0.17 2.20 6.07 -5.19 -0.03 2.17 16 15 C 0.20 2.35 6.17 -82.39 -0.51 1.84 16 16 C -0.31 -3.71 9.69 -38.98 -0.38 -4.09 16 17 C 0.51 6.23 7.36 -15.50 -0.11 6.12 16 18 O -0.53 -7.81 16.69 4.83 0.08 -7.73 16 19 N -0.43 -4.00 2.76 -65.37 -0.18 -4.18 16 20 C 0.10 0.60 10.08 -16.70 -0.17 0.43 16 21 C -0.17 -0.50 9.99 -39.93 -0.40 -0.90 16 22 C -0.04 -0.10 10.07 -39.55 -0.40 -0.50 16 23 C -0.13 -0.71 9.96 -39.36 -0.39 -1.11 16 24 C 0.39 3.52 7.32 -155.95 -1.14 2.38 16 25 N -0.53 -5.86 10.25 -8.56 -0.09 -5.95 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.40 4.99 8.46 -40.82 -0.35 4.64 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 34 H 0.16 1.79 7.97 -52.49 -0.42 1.37 16 35 H 0.18 0.97 7.34 -52.48 -0.39 0.58 16 36 H 0.16 -0.02 8.06 -52.49 -0.42 -0.44 16 37 H 0.15 -0.06 8.06 -52.49 -0.42 -0.49 16 38 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -37.90 336.91 -8.43 -46.33 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.48 Total: -0.46 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -4.30 Total: 0.52 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.13 Total: -48.06 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.17 Total: -20.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.90 -8.43 -46.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565063243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.800 kcal (2) G-P(sol) polarization free energy of solvation -37.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds