Wall clock time and date at job start Fri Apr 10 2020 20:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48494 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46664 * 299.99837 * 3 2 1 6 6 H 1.48497 * 109.47236 * 59.99455 * 3 2 1 7 7 C 1.37882 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47592 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46949 * 180.02562 * 14 13 11 16 16 C 1.38125 * 119.96717 * 115.00062 * 15 14 13 17 17 C 1.39965 * 118.92107 * 179.97438 * 16 15 14 18 18 O 1.22095 * 120.52248 * 180.02562 * 17 16 15 19 19 N 1.35018 * 118.95927 * 0.02562 * 17 16 15 20 20 C 1.36181 * 119.65753 * 179.97438 * 19 17 16 21 21 C 1.35201 * 120.74341 * 179.97438 * 20 19 17 22 22 C 1.40198 * 120.15385 * 0.03598 * 21 20 19 23 23 C 1.36281 * 119.55953 * 359.97438 * 22 21 20 24 24 C 1.36702 * 119.87640 * 0.02562 * 19 17 16 25 25 N 1.32381 * 119.97091 * 294.72279 * 15 14 13 26 26 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47103 * 59.99686 * 9 7 2 28 28 H 1.09000 * 109.47247 * 299.99564 * 9 7 2 29 29 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 30 30 H 1.09004 * 109.47368 * 300.00063 * 10 9 7 31 31 H 0.97010 * 119.99854 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46609 * 60.00363 * 14 13 11 33 33 H 1.09000 * 109.47175 * 300.00158 * 14 13 11 34 34 H 1.07998 * 120.54198 * 359.95723 * 16 15 14 35 35 H 1.08004 * 119.63295 * 0.02562 * 20 19 17 36 36 H 1.07994 * 119.92142 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.21798 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.27169 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4329 -7.4031 0.0008 15 6 2.4123 -8.5486 0.0009 16 6 2.4762 -9.4016 1.0855 17 6 3.3934 -10.4585 1.0622 18 8 3.4743 -11.2303 2.0048 19 7 4.1875 -10.6113 -0.0191 20 6 5.0854 -11.6346 -0.0565 21 6 5.8909 -11.8083 -1.1284 22 6 5.8106 -10.9313 -2.2192 23 6 4.9155 -9.9040 -2.1915 24 6 4.0863 -9.7393 -1.0669 25 7 3.2066 -8.7397 -1.0407 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8904 30 1 2.8719 -3.6044 -0.8895 31 1 3.1356 -6.1345 0.0004 32 1 0.8061 -7.4607 -0.8890 33 1 0.8066 -7.4610 0.8910 34 1 1.8292 -9.2552 1.9377 35 1 5.1543 -12.3154 0.7790 36 1 6.5984 -12.6240 -1.1439 37 1 6.4532 -11.0694 -3.0761 38 1 4.8437 -9.2218 -3.0257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565063243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:54:14 Heat of formation + Delta-G solvation = -27.778768 kcal Electronic energy + Delta-G solvation = -22695.988242 eV Core-core repulsion = 19117.172699 eV Total energy + Delta-G solvation = -3578.815544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.78245 -40.75587 -39.49441 -38.86821 -35.89021 -35.50113 -34.99379 -33.22842 -32.62622 -30.89202 -29.13695 -27.26811 -26.11073 -24.69595 -24.06346 -23.16851 -21.31279 -20.10308 -19.81788 -18.90203 -18.48525 -17.80130 -17.45249 -17.05106 -16.74372 -16.51512 -16.39567 -16.27781 -15.67153 -15.30409 -14.86807 -14.74392 -14.64728 -14.24595 -14.16551 -13.75807 -13.26430 -13.25770 -13.19900 -12.93659 -12.82532 -12.43217 -11.90617 -11.68890 -11.64196 -11.61451 -11.27199 -11.23643 -10.88163 -10.56428 -10.53349 -10.14661 -8.89122 -8.16276 -6.29967 -0.96749 -0.59701 0.73915 1.01189 1.43496 1.45026 1.58215 1.60493 1.69806 2.22465 2.45463 2.63555 2.70002 3.10021 3.16835 3.37269 3.59839 3.78304 4.00169 4.04487 4.11571 4.30316 4.38388 4.50051 4.53675 4.59670 4.59988 4.82215 4.90674 4.98349 5.08869 5.09119 5.31602 5.32635 5.49288 5.52840 5.66036 5.87833 6.19790 6.44375 6.51875 6.55591 6.88575 7.28667 7.40072 8.96653 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.002461 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.076612 B =11373.149520 C =11913.607269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.117 4.117 11 C 0.517 3.483 12 O -0.583 6.583 13 N -0.711 5.711 14 C 0.171 3.829 15 C 0.214 3.786 16 C -0.343 4.343 17 C 0.502 3.498 18 O -0.572 6.572 19 N -0.427 5.427 20 C 0.062 3.938 21 C -0.132 4.132 22 C -0.004 4.004 23 C -0.144 4.144 24 C 0.377 3.623 25 N -0.553 5.553 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.017 1.017 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.414 0.586 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.181 0.819 36 H 0.203 0.797 37 H 0.202 0.798 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.212 -28.485 -6.907 35.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.157 4.157 11 C 0.305 3.695 12 O -0.463 6.463 13 N -0.365 5.365 14 C 0.047 3.953 15 C 0.082 3.918 16 C -0.370 4.370 17 C 0.310 3.690 18 O -0.455 6.455 19 N -0.128 5.128 20 C -0.060 4.060 21 C -0.152 4.152 22 C -0.028 4.028 23 C -0.165 4.165 24 C 0.138 3.862 25 N -0.278 5.278 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.250 0.750 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.174 0.826 35 H 0.198 0.802 36 H 0.220 0.780 37 H 0.219 0.781 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 18.023 -28.252 -6.835 34.201 hybrid contribution -0.224 0.450 1.099 1.209 sum 17.799 -27.802 -5.736 33.506 Atomic orbital electron populations 1.70188 1.08294 1.27714 1.51601 1.26146 0.95741 1.03958 0.94718 0.85265 0.79303 0.78096 0.77520 1.17601 1.20579 1.20733 1.21744 0.94001 0.91588 1.50556 0.90604 1.18707 0.93723 0.92354 0.94876 1.21632 0.99351 0.89784 1.04938 1.21331 0.87817 0.86320 0.74004 1.90667 1.16436 1.88179 1.50993 1.45724 1.10813 1.03898 1.76017 1.20116 0.91852 0.79342 1.03979 1.21201 0.90321 0.92623 0.87658 1.22589 1.08921 1.01135 1.04354 1.17191 0.82574 0.87554 0.81714 1.90958 1.71475 1.47893 1.35215 1.44337 1.28829 1.23054 1.16588 1.22795 0.89926 0.90422 1.02843 1.21711 0.99693 1.02553 0.91229 1.22218 0.93029 0.88812 0.98739 1.21413 0.96166 1.02726 0.96160 1.21197 0.93016 0.84488 0.87543 1.68775 1.11015 1.20691 1.27365 0.92878 0.99704 0.99819 0.87816 0.87575 0.74967 0.89665 0.89317 0.82564 0.80162 0.78006 0.78091 0.79920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.02 13.29 21.45 0.28 -59.73 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 4 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.31 4.26 29.85 0.13 2.44 16 10 C -0.12 -4.79 5.64 29.85 0.17 -4.62 16 11 C 0.52 20.45 7.83 87.66 0.69 21.13 16 12 O -0.58 -28.90 15.98 -3.04 -0.05 -28.94 16 13 N -0.71 -20.78 5.55 -466.78 -2.59 -23.37 16 14 C 0.17 4.63 6.07 85.63 0.52 5.15 16 15 C 0.21 5.16 6.17 42.45 0.26 5.43 16 16 C -0.34 -8.71 9.69 22.66 0.22 -8.50 16 17 C 0.50 12.91 7.36 84.62 0.62 13.54 16 18 O -0.57 -17.82 16.69 -5.63 -0.09 -17.91 16 19 N -0.43 -7.72 2.76 -478.64 -1.32 -9.04 16 20 C 0.06 0.63 10.08 83.32 0.84 1.47 16 21 C -0.13 -0.11 9.99 22.05 0.22 0.11 16 22 C 0.00 0.00 10.07 22.29 0.22 0.23 16 23 C -0.14 -1.04 9.96 22.41 0.22 -0.82 16 24 C 0.38 6.29 7.32 133.98 0.98 7.27 16 25 N -0.55 -12.03 10.25 -181.00 -1.86 -13.88 16 26 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 27 H -0.02 -0.98 8.10 -2.38 -0.02 -1.00 16 28 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 29 H 0.10 3.73 8.14 -2.39 -0.02 3.72 16 30 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 31 H 0.41 9.90 8.46 -92.70 -0.78 9.11 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.09 2.41 7.90 -2.39 -0.02 2.40 16 34 H 0.16 3.90 7.97 -2.91 -0.02 3.87 16 35 H 0.18 1.77 7.34 -2.91 -0.02 1.75 16 36 H 0.20 -1.47 8.06 -2.91 -0.02 -1.50 16 37 H 0.20 -1.80 8.06 -2.91 -0.02 -1.82 16 38 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -89.24 336.91 2.50 -86.74 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.31 Total: 7.49 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.79 Total: 11.99 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -5.48 Total: -106.03 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.14 Total: -46.86 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -89.24 2.50 -86.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565063243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.961 kcal (2) G-P(sol) polarization free energy of solvation -89.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds