Wall clock time and date at job start Fri Apr 10 2020 20:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99480 * 2 1 4 4 H 1.48497 * 109.47051 * 90.00162 * 3 2 1 5 5 H 1.48506 * 109.46785 * 210.00077 * 3 2 1 6 6 H 1.48502 * 109.47202 * 329.99981 * 3 2 1 7 7 C 1.38808 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99466 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00422 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64736 * 359.68677 * 9 7 2 11 11 C 1.54336 * 107.26657 * 178.84932 * 10 9 7 12 12 C 1.55160 * 103.02072 * 338.14359 * 11 10 9 13 13 H 1.09001 * 111.03686 * 277.21568 * 12 11 10 14 14 O 1.42903 * 111.00501 * 153.37962 * 12 11 10 15 15 C 1.35899 * 116.99896 * 162.58129 * 14 12 11 16 16 C 1.38863 * 119.98284 * 185.28088 * 15 14 12 17 17 C 1.38237 * 120.23242 * 180.02562 * 16 15 14 18 18 C 1.38010 * 120.20806 * 359.97438 * 17 16 15 19 19 C 1.39558 * 119.96487 * 0.02562 * 18 17 16 20 20 C 1.47854 * 120.11855 * 180.02562 * 19 18 17 21 21 N 1.31235 * 126.37918 * 179.69277 * 20 19 18 22 22 N 1.28670 * 109.24558 * 179.88414 * 21 20 19 23 23 C 1.30378 * 109.52351 * 0.38103 * 22 21 20 24 24 O 1.34409 * 107.63230 * 359.76965 * 23 22 21 25 25 C 1.38452 * 119.98815 * 5.00175 * 15 14 12 26 26 C 1.47424 * 125.65161 * 179.97438 * 9 7 2 27 27 H 0.96998 * 120.00306 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.88781 * 298.39755 * 10 9 7 29 29 H 1.09003 * 109.88019 * 59.56712 * 10 9 7 30 30 H 1.08998 * 110.85027 * 219.67721 * 11 10 9 31 31 H 1.08997 * 110.66595 * 96.52509 * 11 10 9 32 32 H 1.07995 * 119.88251 * 0.02562 * 16 15 14 33 33 H 1.08001 * 119.89796 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.02265 * 179.97438 * 18 17 16 35 35 H 1.08007 * 126.18420 * 179.76659 * 23 22 21 36 36 H 1.08002 * 120.10021 * 0.02562 * 25 15 14 37 37 H 1.09006 * 110.36814 * 322.93363 * 26 9 7 38 38 H 1.09000 * 110.36321 * 85.25051 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.7001 6 1 1.4474 2.6527 -0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0065 11 6 -0.4483 -4.0441 -0.0255 12 6 0.8520 -4.6562 -0.6104 13 1 0.8571 -4.5971 -1.6988 14 8 1.0250 -6.0055 -0.1727 15 6 1.8980 -6.7747 -0.8749 16 6 2.0324 -8.1235 -0.5732 17 6 2.9193 -8.9107 -1.2838 18 6 3.6766 -8.3611 -2.2982 19 6 3.5484 -7.0065 -2.6085 20 6 4.3577 -6.4143 -3.6949 21 7 4.3319 -5.1637 -4.0918 22 7 5.1688 -5.0075 -5.0565 23 6 5.7510 -6.1447 -5.3167 24 8 5.2553 -7.0598 -4.4662 25 6 2.6488 -6.2146 -1.8944 26 6 1.9336 -3.7310 0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.5504 -2.0865 0.9111 29 1 -0.5612 -2.0503 -0.8743 30 1 -1.2984 -4.2517 -0.6753 31 1 -0.6329 -4.4203 0.9807 32 1 1.4420 -8.5591 0.2192 33 1 3.0191 -9.9592 -1.0449 34 1 4.3689 -8.9787 -2.8511 35 1 6.4968 -6.3198 -6.0781 36 1 2.5422 -5.1666 -2.1327 37 1 2.8329 -3.7405 -0.6154 38 1 2.1671 -4.0417 1.0189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228362155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:29 Heat of formation + Delta-G solvation = 66.915373 kcal Electronic energy + Delta-G solvation = -23748.162818 eV Core-core repulsion = 20173.453520 eV Total energy + Delta-G solvation = -3574.709298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.29925 -40.25750 -38.05593 -36.34567 -36.17934 -32.98634 -32.24110 -30.29599 -29.87546 -29.09458 -27.43081 -24.80059 -24.57955 -23.97765 -22.36250 -21.87893 -20.30512 -20.06007 -18.68344 -17.45396 -17.43501 -17.04476 -16.15950 -16.01069 -15.69101 -15.12822 -14.89276 -14.64909 -14.13012 -13.77246 -13.70398 -12.88698 -12.66123 -12.54966 -12.40941 -12.08826 -11.99650 -11.85426 -11.76399 -11.37276 -11.00500 -10.93197 -10.78982 -10.54230 -10.33137 -10.20530 -10.05261 -9.88048 -9.68280 -8.89751 -8.60792 -8.23857 -6.87001 -5.71793 -3.06175 0.28698 1.23987 1.52694 2.06577 2.37637 3.30513 3.43159 3.48186 3.50660 3.59774 3.66665 4.28758 4.51292 4.65141 4.81407 4.88397 4.96882 5.12913 5.22606 5.26425 5.34468 5.35709 5.40402 5.55390 5.59103 5.67347 5.72892 6.09163 6.11431 6.18682 6.21213 6.32683 6.41655 6.54106 6.56404 6.68983 7.52418 7.54898 7.56063 7.80668 8.11634 8.22889 9.20425 9.79876 10.43537 11.40161 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.004360 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.310409 B = 6420.607125 C = 8161.728150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.133 4.133 12 C 0.061 3.939 13 H 0.083 0.917 14 O -0.300 6.300 15 C 0.143 3.857 16 C -0.131 4.131 17 C -0.084 4.084 18 C -0.129 4.129 19 C 0.009 3.991 20 C 0.215 3.785 21 N -0.267 5.267 22 N -0.284 5.284 23 C 0.138 3.862 24 O -0.225 6.225 25 C -0.157 4.157 26 C 0.118 3.882 27 H 0.253 0.747 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.264 0.736 36 H 0.152 0.848 37 H 0.045 0.955 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.704 -20.228 -6.481 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.054 3.946 11 C -0.172 4.172 12 C 0.005 3.995 13 H 0.100 0.900 14 O -0.212 6.212 15 C 0.097 3.903 16 C -0.150 4.150 17 C -0.102 4.102 18 C -0.149 4.149 19 C 0.007 3.993 20 C 0.007 3.993 21 N -0.114 5.114 22 N -0.130 5.130 23 C -0.092 4.092 24 O -0.104 6.104 25 C -0.177 4.177 26 C -0.009 4.009 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.279 0.721 36 H 0.170 0.830 37 H 0.063 0.937 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.222 -18.741 -6.425 20.766 hybrid contribution 1.075 -0.151 -0.318 1.131 sum 7.297 -18.892 -6.743 21.345 Atomic orbital electron populations 1.69936 1.04900 1.25182 1.57032 1.24794 0.95743 0.97693 1.01985 0.86092 0.78700 0.83287 0.77564 1.21561 1.20560 1.21590 1.19061 0.90525 0.82092 1.43976 0.90289 1.44314 1.01618 0.99533 1.87374 1.21221 0.84492 0.87124 1.01810 1.23024 0.94419 0.98886 1.00823 1.23965 0.99158 0.77389 0.99004 0.89959 1.86142 1.57363 1.24525 1.53192 1.18877 0.89842 0.91058 0.90531 1.20705 1.01187 0.90870 1.02262 1.20815 0.94902 0.99889 0.94630 1.21045 1.01405 0.93076 0.99405 1.16920 0.96265 0.93470 0.92684 1.25686 0.91266 0.87715 0.94635 1.74908 1.15375 1.13682 1.07456 1.74454 1.05933 1.22785 1.09868 1.29740 1.00869 0.82770 0.95865 1.84860 1.45126 1.41498 1.38913 1.21481 0.97310 1.01900 0.96967 1.21979 0.94320 0.86663 0.97953 0.93659 0.93170 0.92937 0.91256 0.91070 0.84451 0.84516 0.85207 0.72087 0.83026 0.93682 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 10.31 55.49 0.57 -26.64 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.51 10.28 -15.07 -0.15 -6.66 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.64 3.39 -170.08 -0.58 -16.22 16 10 C 0.18 4.32 5.38 -3.06 -0.02 4.31 16 11 C -0.13 -2.52 6.68 -24.89 -0.17 -2.68 16 12 C 0.06 1.13 2.82 -24.59 -0.07 1.06 16 13 H 0.08 1.50 6.61 -51.93 -0.34 1.15 16 14 O -0.30 -4.91 9.96 -19.42 -0.19 -5.10 16 15 C 0.14 2.05 6.63 -39.27 -0.26 1.79 16 16 C -0.13 -1.46 9.98 -39.35 -0.39 -1.85 16 17 C -0.08 -0.77 10.03 -39.67 -0.40 -1.17 16 18 C -0.13 -1.33 9.72 -39.17 -0.38 -1.71 16 19 C 0.01 0.11 5.87 -105.00 -0.62 -0.50 16 20 C 0.21 3.02 7.99 -13.87 -0.11 2.91 16 21 N -0.27 -4.45 11.92 32.07 0.38 -4.07 16 22 N -0.28 -4.16 12.22 29.45 0.36 -3.80 16 23 C 0.14 1.32 13.36 52.14 0.70 2.02 16 24 O -0.23 -2.52 10.67 4.03 0.04 -2.48 16 25 C -0.16 -2.33 8.36 -39.03 -0.33 -2.66 16 26 C 0.12 2.54 6.59 -2.54 -0.02 2.52 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 1.33 7.52 -51.93 -0.39 0.94 16 29 H 0.05 1.39 7.37 -51.93 -0.38 1.01 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.13 1.05 7.93 -52.49 -0.42 0.64 16 35 H 0.26 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.15 2.57 5.10 -52.49 -0.27 2.30 16 37 H 0.04 0.97 7.24 -51.93 -0.38 0.59 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -33.76 325.02 -6.11 -39.86 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.26 Total: -1.05 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.31 Total: -2.90 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.74 Total: -50.73 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.15 Total: -7.58 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.76 -6.11 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228362155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.777 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds