Wall clock time and date at job start Fri Apr 10 2020 20:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99480 * 2 1 4 4 H 1.48497 * 109.47051 * 90.00162 * 3 2 1 5 5 H 1.48506 * 109.46785 * 210.00077 * 3 2 1 6 6 H 1.48502 * 109.47202 * 329.99981 * 3 2 1 7 7 C 1.38808 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99466 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00422 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64736 * 359.68677 * 9 7 2 11 11 C 1.54336 * 107.26657 * 178.84932 * 10 9 7 12 12 C 1.55160 * 103.02072 * 338.14359 * 11 10 9 13 13 H 1.09001 * 111.03686 * 277.21568 * 12 11 10 14 14 O 1.42903 * 111.00501 * 153.37962 * 12 11 10 15 15 C 1.35899 * 116.99896 * 162.58129 * 14 12 11 16 16 C 1.38863 * 119.98284 * 185.28088 * 15 14 12 17 17 C 1.38237 * 120.23242 * 180.02562 * 16 15 14 18 18 C 1.38010 * 120.20806 * 359.97438 * 17 16 15 19 19 C 1.39558 * 119.96487 * 0.02562 * 18 17 16 20 20 C 1.47854 * 120.11855 * 180.02562 * 19 18 17 21 21 N 1.31235 * 126.37918 * 179.69277 * 20 19 18 22 22 N 1.28670 * 109.24558 * 179.88414 * 21 20 19 23 23 C 1.30378 * 109.52351 * 0.38103 * 22 21 20 24 24 O 1.34409 * 107.63230 * 359.76965 * 23 22 21 25 25 C 1.38452 * 119.98815 * 5.00175 * 15 14 12 26 26 C 1.47424 * 125.65161 * 179.97438 * 9 7 2 27 27 H 0.96998 * 120.00306 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.88781 * 298.39755 * 10 9 7 29 29 H 1.09003 * 109.88019 * 59.56712 * 10 9 7 30 30 H 1.08998 * 110.85027 * 219.67721 * 11 10 9 31 31 H 1.08997 * 110.66595 * 96.52509 * 11 10 9 32 32 H 1.07995 * 119.88251 * 0.02562 * 16 15 14 33 33 H 1.08001 * 119.89796 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.02265 * 179.97438 * 18 17 16 35 35 H 1.08007 * 126.18420 * 179.76659 * 23 22 21 36 36 H 1.08002 * 120.10021 * 0.02562 * 25 15 14 37 37 H 1.09006 * 110.36814 * 322.93363 * 26 9 7 38 38 H 1.09000 * 110.36321 * 85.25051 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.7001 6 1 1.4474 2.6527 -0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0065 11 6 -0.4483 -4.0441 -0.0255 12 6 0.8520 -4.6562 -0.6104 13 1 0.8571 -4.5971 -1.6988 14 8 1.0250 -6.0055 -0.1727 15 6 1.8980 -6.7747 -0.8749 16 6 2.0324 -8.1235 -0.5732 17 6 2.9193 -8.9107 -1.2838 18 6 3.6766 -8.3611 -2.2982 19 6 3.5484 -7.0065 -2.6085 20 6 4.3577 -6.4143 -3.6949 21 7 4.3319 -5.1637 -4.0918 22 7 5.1688 -5.0075 -5.0565 23 6 5.7510 -6.1447 -5.3167 24 8 5.2553 -7.0598 -4.4662 25 6 2.6488 -6.2146 -1.8944 26 6 1.9336 -3.7310 0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.5504 -2.0865 0.9111 29 1 -0.5612 -2.0503 -0.8743 30 1 -1.2984 -4.2517 -0.6753 31 1 -0.6329 -4.4203 0.9807 32 1 1.4420 -8.5591 0.2192 33 1 3.0191 -9.9592 -1.0449 34 1 4.3689 -8.9787 -2.8511 35 1 6.4968 -6.3198 -6.0781 36 1 2.5422 -5.1666 -2.1327 37 1 2.8329 -3.7405 -0.6154 38 1 2.1671 -4.0417 1.0189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228362155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:28 Heat of formation + Delta-G solvation = 40.736151 kcal Electronic energy + Delta-G solvation = -23749.298034 eV Core-core repulsion = 20173.453520 eV Total energy + Delta-G solvation = -3575.844514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.24115 -41.40372 -39.35701 -37.75692 -37.29155 -34.42157 -33.76114 -31.55547 -31.03322 -30.59217 -29.14211 -26.60549 -25.68005 -24.98005 -23.51029 -22.90320 -22.08396 -21.56574 -19.76025 -19.03769 -18.39606 -18.38969 -17.24466 -17.04798 -16.80070 -16.67445 -16.37023 -15.95312 -15.63043 -15.31960 -14.81480 -14.38484 -14.05538 -14.00386 -13.72556 -13.56931 -13.22077 -13.03337 -12.95672 -12.75590 -12.72129 -12.48708 -12.16793 -12.07625 -11.99442 -11.96100 -11.70719 -11.57954 -11.22678 -10.75659 -9.86074 -9.27466 -8.98647 -7.90561 -5.27660 -0.63317 0.32538 0.65292 1.18764 1.40013 1.43258 1.45719 1.54545 2.04519 2.47331 2.67917 2.84059 3.28262 3.52746 3.57090 3.62560 3.79511 3.83059 3.89306 3.99383 4.02479 4.12246 4.29695 4.33271 4.46504 4.56912 4.65179 4.70744 4.76733 4.82047 4.92319 4.95721 5.21810 5.27803 5.34495 5.37750 5.56358 5.66674 5.68903 6.11811 6.33764 7.03983 7.16939 7.67901 8.31274 9.19810 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.004360 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.310409 B = 6420.607125 C = 8161.728150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.623 5.623 10 C 0.185 3.815 11 C -0.118 4.118 12 C 0.085 3.915 13 H 0.079 0.921 14 O -0.302 6.302 15 C 0.113 3.887 16 C -0.120 4.120 17 C -0.068 4.068 18 C -0.112 4.112 19 C -0.009 4.009 20 C 0.210 3.790 21 N -0.320 5.320 22 N -0.342 5.342 23 C 0.175 3.825 24 O -0.218 6.218 25 C -0.177 4.177 26 C 0.118 3.882 27 H 0.250 0.750 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.324 0.676 36 H 0.118 0.882 37 H 0.037 0.963 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -23.771 -6.915 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.351 5.351 10 C 0.060 3.940 11 C -0.156 4.156 12 C 0.028 3.972 13 H 0.097 0.903 14 O -0.215 6.215 15 C 0.068 3.932 16 C -0.139 4.139 17 C -0.085 4.085 18 C -0.131 4.131 19 C -0.011 4.011 20 C 0.001 3.999 21 N -0.167 5.167 22 N -0.186 5.186 23 C -0.055 4.055 24 O -0.097 6.097 25 C -0.197 4.197 26 C -0.008 4.008 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.179 0.821 33 H 0.202 0.798 34 H 0.177 0.823 35 H 0.338 0.662 36 H 0.136 0.864 37 H 0.055 0.945 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.678 -22.305 -6.864 24.568 hybrid contribution 0.774 0.766 -0.260 1.120 sum 8.453 -21.539 -7.124 24.210 Atomic orbital electron populations 1.70142 1.06149 1.25595 1.57718 1.25633 0.96700 1.00887 1.01985 0.85074 0.77568 0.78977 0.77683 1.20803 1.19861 1.21518 1.19387 0.90855 0.83588 1.43956 0.90523 1.44589 1.02626 1.00544 1.87305 1.20978 0.83517 0.90673 0.98811 1.22838 0.95555 0.94780 1.02463 1.23435 0.97060 0.78382 0.98368 0.90323 1.86091 1.58523 1.23061 1.53807 1.19194 0.90517 0.92236 0.91251 1.21102 1.01149 0.89224 1.02471 1.21354 0.92695 1.01669 0.92775 1.21468 1.00976 0.91634 0.99058 1.17088 0.96397 0.94783 0.92847 1.25792 0.91737 0.87377 0.95018 1.74828 1.17177 1.15618 1.09069 1.74346 1.07718 1.25512 1.10997 1.31024 0.99017 0.80973 0.94470 1.84878 1.44634 1.41336 1.38850 1.21265 0.99147 1.00787 0.98488 1.22036 0.95155 0.85673 0.97901 0.94053 0.96194 0.96058 0.88575 0.89635 0.82128 0.79788 0.82262 0.66172 0.86359 0.94460 0.95276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 10.31 21.65 0.22 -57.93 16 2 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 3 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.25 -14.81 10.28 84.03 0.86 -13.94 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.62 -34.05 3.39 -692.02 -2.35 -36.40 16 10 C 0.18 9.43 5.38 86.73 0.47 9.90 16 11 C -0.12 -4.51 6.68 31.79 0.21 -4.29 16 12 C 0.08 3.19 2.82 31.98 0.09 3.28 16 13 H 0.08 3.02 6.61 -2.39 -0.02 3.00 16 14 O -0.30 -9.75 9.96 -92.42 -0.92 -10.67 16 15 C 0.11 3.15 6.63 22.47 0.15 3.30 16 16 C -0.12 -2.27 9.98 22.42 0.22 -2.05 16 17 C -0.07 -0.90 10.03 22.22 0.22 -0.68 16 18 C -0.11 -1.89 9.72 22.53 0.22 -1.67 16 19 C -0.01 -0.24 5.87 -20.11 -0.12 -0.35 16 20 C 0.21 5.86 7.99 87.33 0.70 6.56 16 21 N -0.32 -11.15 11.92 -166.30 -1.98 -13.13 16 22 N -0.34 -10.07 12.22 -175.22 -2.14 -12.21 16 23 C 0.17 2.96 13.36 130.46 1.74 4.71 16 24 O -0.22 -4.42 10.67 -8.48 -0.09 -4.51 16 25 C -0.18 -5.39 8.36 22.63 0.19 -5.20 16 26 C 0.12 5.34 6.59 86.85 0.57 5.91 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.02 1.11 7.52 -2.39 -0.02 1.10 16 29 H 0.02 1.19 7.37 -2.39 -0.02 1.18 16 30 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.16 1.77 7.93 -2.91 -0.02 1.74 16 35 H 0.32 0.58 8.06 -2.91 -0.02 0.55 16 36 H 0.12 4.37 5.10 -2.91 -0.01 4.35 16 37 H 0.04 1.72 7.24 -2.38 -0.02 1.70 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -79.97 325.02 1.86 -78.11 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.09 Total: 4.66 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.00 Total: 2.47 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.25 Total: -119.68 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -1.01 Total: -15.17 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -79.97 1.86 -78.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228362155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.846 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds