Wall clock time and date at job start Fri Apr 10 2020 20:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38425 * 122.53762 * 2 1 4 4 C 1.33390 * 114.92123 * 179.97438 * 3 2 1 5 5 S 1.75891 * 109.59251 * 0.02562 * 4 3 2 6 6 C 1.33383 * 122.54063 * 179.97438 * 2 1 3 7 7 C 1.50702 * 125.20368 * 359.97438 * 6 2 1 8 8 H 1.09002 * 109.46793 * 344.99552 * 7 6 2 9 9 C 1.52995 * 109.47506 * 104.99754 * 7 6 2 10 10 C 1.50702 * 109.47355 * 185.00228 * 9 7 6 11 11 C 1.38232 * 119.99458 * 269.72444 * 10 9 7 12 12 C 1.38239 * 119.99650 * 179.76341 * 11 10 9 13 13 C 1.38241 * 119.99879 * 0.50728 * 12 11 10 14 14 C 1.38238 * 120.00038 * 359.74650 * 13 12 11 15 15 C 1.38235 * 119.99874 * 89.99543 * 10 9 7 16 16 N 1.46902 * 109.46735 * 224.99904 * 7 6 2 17 17 C 1.46901 * 111.00137 * 84.99801 * 16 7 6 18 18 C 1.50708 * 109.46785 * 179.97438 * 17 16 7 19 19 H 1.07999 * 120.00107 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99746 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99865 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99862 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47016 * 90.00091 * 22 20 18 24 24 H 1.48500 * 109.46835 * 209.99746 * 22 20 18 25 25 H 1.48493 * 109.47124 * 329.99603 * 22 20 18 26 26 H 1.09002 * 109.46540 * 90.02554 * 1 2 3 27 27 H 1.08998 * 109.47030 * 210.02568 * 1 2 3 28 28 H 1.09001 * 109.46836 * 330.02661 * 1 2 3 29 29 H 1.07997 * 122.54292 * 359.71157 * 3 2 1 30 30 H 1.08003 * 125.20243 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46809 * 305.00229 * 9 7 6 32 32 H 1.08999 * 109.47432 * 64.99880 * 9 7 6 33 33 H 1.07995 * 120.00744 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.99987 * 180.22751 * 12 11 10 35 35 H 1.07994 * 120.00183 * 179.71862 * 13 12 11 36 36 H 1.07994 * 119.99843 * 179.97438 * 14 13 12 37 37 H 1.08001 * 120.00217 * 0.02562 * 15 10 9 38 38 H 1.00897 * 111.00003 * 321.03534 * 16 7 6 39 39 H 1.08997 * 109.46945 * 299.99315 * 17 16 7 40 40 H 1.09000 * 109.46880 * 59.99915 * 17 16 7 41 41 H 0.97008 * 120.00080 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9387 -0.7304 0.0004 6 6 2.2245 -1.1244 0.0005 7 6 1.6537 -2.5192 0.0017 8 1 0.5975 -2.4793 0.2681 9 6 1.8055 -3.1336 -1.3912 10 6 1.1263 -4.4785 -1.4238 11 6 1.8371 -5.6196 -1.1021 12 6 1.2128 -6.8527 -1.1272 13 6 -0.1194 -6.9459 -1.4843 14 6 -0.8288 -5.8053 -1.8111 15 6 -0.2059 -4.5715 -1.7809 16 7 2.3751 -3.3426 0.9813 17 6 1.8087 -3.1774 2.3267 18 6 2.5724 -4.0358 3.3020 19 1 3.3963 -4.6429 2.9570 20 6 2.2192 -4.0461 4.6347 21 7 1.2155 -3.3071 5.0546 22 14 3.1661 -5.1095 5.8437 23 1 4.2989 -4.3310 6.4060 24 1 2.2626 -5.5332 6.9434 25 1 3.6896 -6.3095 5.1430 26 1 -0.3632 -0.0005 -1.0277 27 1 -0.3633 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 1.7965 2.1464 -0.0046 30 1 4.3078 1.7824 0.0002 31 1 1.3463 -2.4767 -2.1301 32 1 2.8639 -3.2554 -1.6213 33 1 2.8791 -5.5474 -0.8277 34 1 1.7671 -7.7439 -0.8723 35 1 -0.6059 -7.9097 -1.5083 36 1 -1.8694 -5.8781 -2.0904 37 1 -0.7599 -3.6805 -2.0369 38 1 3.3615 -3.1303 0.9756 39 1 1.8832 -2.1321 2.6264 40 1 0.7615 -3.4797 2.3196 41 1 0.9672 -3.3140 5.9924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298904607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:55:25 Heat of formation + Delta-G solvation = 45.694279 kcal Electronic energy + Delta-G solvation = -21857.630618 eV Core-core repulsion = 18828.294319 eV Total energy + Delta-G solvation = -3029.336299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.14678 -38.23698 -35.83523 -33.10854 -31.67121 -30.68887 -30.46915 -28.80581 -26.46589 -25.85247 -23.20566 -22.22984 -22.03863 -21.24921 -20.32501 -18.29840 -17.04293 -16.42753 -16.16648 -15.27302 -14.91220 -14.75448 -14.56495 -13.89531 -13.72378 -13.65507 -13.29484 -13.02329 -12.81547 -12.58704 -12.24803 -12.10047 -11.85630 -11.76246 -11.56434 -11.53061 -11.36331 -10.93623 -10.78670 -10.65200 -10.57049 -10.55160 -10.23193 -9.91429 -9.18425 -8.56221 -8.49092 -8.41268 -8.14875 -8.01305 -7.38686 -6.00660 -4.02109 1.27471 1.76340 1.83200 1.92798 2.29480 2.95429 3.32751 3.38773 3.43059 4.18439 4.44563 4.92727 5.08608 5.12868 5.25686 5.32426 5.35652 5.38065 5.47064 5.59344 5.63157 5.70374 5.73689 5.81390 5.85655 5.90013 5.98248 6.11468 6.13039 6.26075 6.35091 6.43813 6.48420 6.71240 6.78097 6.82653 6.90720 7.08641 7.25356 7.41563 7.45986 7.78281 8.12884 8.32837 8.57696 9.05825 9.62127 11.10344 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.007058 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.412600 B = 3965.985606 C = 6442.510813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.115 4.115 3 C -0.126 4.126 4 C -0.225 4.225 5 S 0.099 5.901 6 C -0.184 4.184 7 C 0.158 3.842 8 H 0.092 0.908 9 C -0.064 4.064 10 C -0.059 4.059 11 C -0.081 4.081 12 C -0.122 4.122 13 C -0.130 4.130 14 C -0.127 4.127 15 C -0.123 4.123 16 N -0.670 5.670 17 C 0.199 3.801 18 C -0.511 4.511 19 H 0.061 0.939 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.327 0.673 39 H -0.012 1.012 40 H 0.027 0.973 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 3.561 -15.124 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.157 4.157 4 C -0.361 4.361 5 S 0.363 5.637 6 C -0.303 4.303 7 C 0.045 3.955 8 H 0.110 0.890 9 C -0.103 4.103 10 C -0.059 4.059 11 C -0.099 4.099 12 C -0.140 4.140 13 C -0.148 4.148 14 C -0.145 4.145 15 C -0.141 4.141 16 N -0.299 5.299 17 C 0.072 3.928 18 C -0.550 4.550 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.724 3.276 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.176 0.824 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.006 0.994 40 H 0.045 0.955 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.605 2.167 -15.071 15.238 hybrid contribution -0.498 1.379 1.297 1.958 sum 0.107 3.546 -13.774 14.223 Atomic orbital electron populations 1.20505 0.90080 1.02923 1.01639 1.18807 0.97360 0.91616 1.04928 1.20001 0.92886 0.99010 1.03846 1.25469 0.99631 0.99117 1.11889 1.84137 1.06387 1.00188 1.72941 1.25590 0.95592 1.00846 1.08289 1.20256 0.99070 0.83078 0.93141 0.89011 1.20635 1.00503 0.93076 0.96043 1.19623 0.93704 0.94826 0.97718 1.20991 1.00402 0.91620 0.96876 1.21107 0.95010 0.97766 1.00087 1.21020 0.94778 0.98073 1.00971 1.20975 0.99279 0.92855 1.01381 1.20961 0.94527 0.97302 1.01346 1.60907 1.06062 1.54130 1.08836 1.19545 0.95707 0.95080 0.82459 1.21133 1.16039 1.25705 0.92084 0.92084 1.24954 0.95284 0.95829 0.98358 1.69966 1.27784 1.40135 1.15686 0.86532 0.79608 0.80753 0.80727 1.20772 1.21282 1.19789 0.91679 0.91171 0.91852 0.84884 0.82387 0.91347 0.91157 0.85959 0.86623 0.86918 0.86859 0.86801 0.85540 0.99388 0.95512 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.82 36.01 0.35 -0.89 16 2 C -0.11 -1.78 5.80 -106.25 -0.62 -2.39 16 3 C -0.13 -1.77 9.98 -41.21 -0.41 -2.18 16 4 C -0.23 -3.09 11.23 29.04 0.33 -2.77 16 5 S 0.10 1.51 22.19 -107.50 -2.39 -0.88 16 6 C -0.18 -3.05 5.15 -36.00 -0.19 -3.23 16 7 C 0.16 2.74 2.25 -68.87 -0.15 2.58 16 8 H 0.09 1.71 5.94 -51.93 -0.31 1.41 16 9 C -0.06 -0.95 5.01 -27.88 -0.14 -1.09 16 10 C -0.06 -0.91 4.95 -104.62 -0.52 -1.42 16 11 C -0.08 -1.29 9.32 -39.58 -0.37 -1.66 16 12 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 13 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 14 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 15 C -0.12 -1.77 9.70 -39.58 -0.38 -2.16 16 16 N -0.67 -13.95 5.63 -109.22 -0.61 -14.56 16 17 C 0.20 5.17 5.23 -4.97 -0.03 5.14 16 18 C -0.51 -14.46 9.32 -34.44 -0.32 -14.78 16 19 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 22 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.33 6.70 7.44 -39.29 -0.29 6.41 16 39 H -0.01 -0.33 8.00 -51.93 -0.42 -0.75 16 40 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -30.79 356.23 -11.61 -42.40 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.96 Total: 6.85 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -3.74 Total: -29.86 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.12 Total: -40.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.39 Total: -0.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.79 -11.61 -42.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298904607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.094 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds