Wall clock time and date at job start Fri Apr 10 2020 20:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00197 * 2 1 4 4 H 1.48502 * 109.47126 * 270.00054 * 3 2 1 5 5 H 1.48504 * 109.47131 * 29.99698 * 3 2 1 6 6 H 1.48494 * 109.47291 * 149.99759 * 3 2 1 7 7 C 1.37878 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00238 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99686 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46759 * 180.02562 * 9 7 2 11 11 C 1.36428 * 125.85331 * 275.12759 * 10 9 7 12 12 C 1.35012 * 108.93821 * 180.27189 * 11 10 9 13 13 C 1.41157 * 108.24504 * 359.76675 * 12 11 10 14 14 N 1.32969 * 126.37585 * 180.02562 * 13 12 11 15 15 C 1.33844 * 120.00332 * 359.95280 * 14 13 12 16 16 O 1.21889 * 119.99687 * 0.02562 * 15 14 13 17 17 C 1.47800 * 120.00216 * 180.02562 * 15 14 13 18 18 C 1.41176 * 126.38858 * 359.69043 * 17 15 14 19 19 N 1.30490 * 108.04986 * 179.82000 * 18 17 15 20 20 N 1.39937 * 108.85756 * 0.43867 * 19 18 17 21 21 C 1.46502 * 125.77957 * 179.74743 * 20 19 18 22 22 C 1.53005 * 117.49648 * 163.58438 * 21 20 19 23 23 C 1.53001 * 60.00084 * 252.51212 * 22 21 20 24 24 C 1.34376 * 108.44021 * 359.72064 * 20 19 18 25 25 N 1.37431 * 107.24651 * 359.97438 * 13 12 11 26 26 H 0.97001 * 126.36000 * 179.97438 * 25 13 12 27 27 H 0.97004 * 119.99776 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47100 * 60.00435 * 9 7 2 29 29 H 1.08997 * 109.47172 * 299.99851 * 9 7 2 30 30 H 1.07995 * 125.53020 * 0.07131 * 11 10 9 31 31 H 1.08005 * 125.87706 * 179.78711 * 12 11 10 32 32 H 1.07994 * 125.96779 * 359.97438 * 18 17 15 33 33 H 1.08991 * 115.55364 * 309.29027 * 21 20 19 34 34 H 1.09004 * 117.49843 * 359.97438 * 22 21 20 35 35 H 1.08998 * 117.50062 * 145.02344 * 22 21 20 36 36 H 1.08994 * 117.50166 * 252.51029 * 23 22 21 37 37 H 1.09006 * 117.51331 * 107.47838 * 23 22 21 38 38 H 1.08003 * 126.28706 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.1725 -3.3619 1.1022 12 6 4.6419 -4.5659 0.7115 13 6 4.7710 -4.5550 -0.6942 14 7 5.2023 -5.5570 -1.4543 15 6 5.5657 -6.7157 -0.8915 16 8 5.5007 -6.8525 0.3180 17 6 6.0457 -7.8294 -1.7364 18 6 6.1688 -7.8208 -3.1428 19 7 6.6285 -8.9838 -3.5154 20 7 6.8089 -9.7834 -2.3813 21 6 7.3046 -11.1620 -2.3752 22 6 7.7925 -11.7315 -1.0415 23 6 8.8008 -11.3738 -2.1354 24 6 6.4511 -9.0724 -1.2986 25 7 4.3667 -3.3162 -1.1308 26 1 4.3440 -3.0099 -2.0509 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8752 -0.6805 -0.8888 30 1 3.9699 -3.0679 2.1215 31 1 4.8778 -5.3950 1.3623 32 1 5.9273 -6.9952 -3.7956 33 1 6.8033 -11.8449 -3.0610 34 1 7.7452 -11.0802 -0.1688 35 1 7.6122 -12.7892 -0.8497 36 1 9.2837 -12.1961 -2.6631 37 1 9.4163 -10.4872 -1.9824 38 1 6.4769 -9.4120 -0.2737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528603473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:55:12 Heat of formation + Delta-G solvation = 182.444487 kcal Electronic energy + Delta-G solvation = -22584.955107 eV Core-core repulsion = 19047.548279 eV Total energy + Delta-G solvation = -3537.406828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18958 -40.83772 -38.20186 -37.26960 -34.26069 -32.90719 -31.34376 -31.13630 -30.79228 -30.00191 -27.20032 -24.46143 -23.03010 -22.86308 -22.09265 -21.36491 -21.05252 -20.02815 -19.14991 -17.49173 -17.41566 -16.68061 -16.03050 -15.46766 -15.13196 -14.93947 -14.73555 -14.44908 -14.22172 -14.03959 -13.42262 -13.17297 -13.00608 -12.97006 -12.77637 -12.55612 -12.25911 -11.98417 -11.53019 -11.30850 -11.21416 -11.03637 -10.73005 -10.69037 -10.06534 -9.66860 -9.39924 -9.36328 -9.09098 -9.05348 -8.41770 -8.39052 -6.92034 -6.52543 -4.61277 1.43145 1.89029 1.98863 2.28179 2.60459 2.95509 3.00003 3.06888 3.18593 3.27404 3.96424 4.10190 4.17625 4.28927 4.48561 4.71772 4.73459 4.77112 4.95323 5.13012 5.16621 5.19701 5.36958 5.51033 5.58076 5.68163 5.73149 5.80159 5.91544 6.05988 6.25614 6.51044 6.68411 6.76715 6.91975 6.96616 7.37649 7.55752 7.75739 7.83869 8.03130 8.28323 8.51216 8.99632 9.37875 10.58966 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.044034 B = 0.002382 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.713204 B =11753.134262 C =11952.566379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.083 3.917 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.228 3.772 10 N -0.342 5.342 11 C 0.165 3.835 12 C -0.330 4.330 13 C 0.475 3.525 14 N -0.691 5.691 15 C 0.570 3.430 16 O -0.590 6.590 17 C -0.244 4.244 18 C 0.100 3.900 19 N -0.309 5.309 20 N -0.347 5.347 21 C 0.084 3.916 22 C -0.171 4.171 23 C -0.176 4.176 24 C 0.102 3.898 25 N -0.467 5.467 26 H 0.446 0.554 27 H 0.273 0.727 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.189 0.811 31 H 0.185 0.815 32 H 0.194 0.806 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.101 -14.261 -1.169 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.603 4.603 8 H 0.104 0.896 9 C 0.110 3.890 10 N -0.127 5.127 11 C 0.021 3.979 12 C -0.362 4.362 13 C 0.224 3.776 14 N -0.454 5.454 15 C 0.357 3.643 16 O -0.473 6.473 17 C -0.258 4.258 18 C -0.087 4.087 19 N -0.129 5.129 20 N -0.126 5.126 21 C -0.019 4.019 22 C -0.209 4.209 23 C -0.215 4.215 24 C -0.047 4.047 25 N -0.190 5.190 26 H 0.293 0.707 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.206 0.794 31 H 0.202 0.798 32 H 0.211 0.789 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 14.241 -14.689 -2.519 20.613 hybrid contribution -0.192 1.563 0.810 1.771 sum 14.048 -13.126 -1.708 19.302 Atomic orbital electron populations 1.69858 1.06257 1.27884 1.47080 1.24833 0.94875 0.98991 0.93638 0.86889 0.80262 0.83615 0.79192 1.19573 1.20227 1.18787 1.21254 0.87826 0.95930 1.55295 0.89624 1.20355 0.96858 0.72057 0.99682 1.47495 1.56739 1.11792 0.96721 1.22848 0.92606 0.90447 0.92016 1.22497 1.18122 1.00325 0.95283 1.19129 0.84883 0.83732 0.89859 1.68760 1.37839 1.01830 1.36941 1.17931 0.76551 0.84804 0.85000 1.90586 1.55079 1.84718 1.16909 1.20114 1.16189 0.95540 0.93976 1.24176 0.94921 0.94870 0.94725 1.77185 1.24286 1.03911 1.07482 1.47747 1.49753 1.10595 1.04497 1.21689 0.97015 0.80501 1.02682 1.23451 1.02175 1.02851 0.92467 1.23471 0.91828 1.04207 1.01945 1.22799 0.96790 0.91562 0.93544 1.44503 1.61516 1.09591 1.03381 0.70697 0.91698 0.91722 0.93748 0.79395 0.79824 0.78895 0.84339 0.87484 0.86602 0.87123 0.87921 0.80332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.85 13.96 55.43 0.77 -23.07 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 17.78 27.47 -169.99 -4.67 13.11 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -4.91 6.54 56.52 0.37 -4.54 16 7 C -0.57 -13.59 9.94 -34.44 -0.34 -13.93 16 8 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.23 4.33 5.26 -5.19 -0.03 4.30 16 10 N -0.34 -6.07 3.63 -62.23 -0.23 -6.30 16 11 C 0.17 2.69 11.45 -16.65 -0.19 2.50 16 12 C -0.33 -5.98 9.52 -39.62 -0.38 -6.36 16 13 C 0.47 9.01 8.07 -155.27 -1.25 7.76 16 14 N -0.69 -13.49 10.32 -12.24 -0.13 -13.61 16 15 C 0.57 11.24 7.74 -12.77 -0.10 11.15 16 16 O -0.59 -12.47 13.83 5.02 0.07 -12.40 16 17 C -0.24 -4.13 6.13 -105.00 -0.64 -4.77 16 18 C 0.10 1.56 11.81 -17.01 -0.20 1.36 16 19 N -0.31 -4.70 12.50 30.84 0.39 -4.31 16 20 N -0.35 -4.54 3.91 -54.32 -0.21 -4.75 16 21 C 0.08 0.75 7.12 -67.92 -0.48 0.26 16 22 C -0.17 -1.06 9.97 -26.73 -0.27 -1.33 16 23 C -0.18 -1.22 10.46 -26.73 -0.28 -1.50 16 24 C 0.10 1.45 10.62 -16.57 -0.18 1.28 16 25 N -0.47 -8.05 7.38 31.33 0.23 -7.82 16 26 H 0.45 6.66 8.96 -182.55 -1.64 5.02 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.07 1.14 7.20 -51.93 -0.37 0.76 16 29 H 0.04 0.80 7.57 -51.93 -0.39 0.40 16 30 H 0.19 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.18 3.47 5.77 -52.48 -0.30 3.17 16 32 H 0.19 2.69 8.06 -52.49 -0.42 2.27 16 33 H 0.14 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.11 0.70 6.99 -51.93 -0.36 0.34 16 35 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.18 2.14 7.21 -52.48 -0.38 1.76 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -32.26 336.07 -8.72 -40.98 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.57 Total: 10.43 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -4.44 Total: 2.67 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.83 Total: -59.87 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -4.67 Total: 13.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.26 -8.72 -40.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528603473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.427 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds