Wall clock time and date at job start Fri Apr 10 2020 20:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38115 * 119.97498 * 2 1 4 4 C 1.38902 * 119.94843 * 179.97438 * 3 2 1 5 5 N 1.39820 * 120.04976 * 179.72422 * 4 3 2 6 6 C 1.39778 * 119.99762 * 154.14690 * 5 4 3 7 7 C 1.38980 * 120.00696 * 328.93265 * 6 5 4 8 8 C 1.37998 * 119.99063 * 179.77057 * 7 6 5 9 9 C 1.38917 * 120.00789 * 0.50778 * 8 7 6 10 10 O 1.35784 * 119.99330 * 179.72198 * 9 8 7 11 11 C 1.34813 * 116.99968 * 186.85480 * 10 9 8 12 12 H 1.08002 * 119.99841 * 354.61570 * 11 10 9 13 13 C 1.38614 * 119.99792 * 174.60581 * 11 10 9 14 14 N 1.31591 * 120.00168 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99865 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46992 * 90.00432 * 15 13 11 17 17 H 1.48502 * 109.47333 * 210.00136 * 15 13 11 18 18 H 1.48499 * 109.47415 * 330.00343 * 15 13 11 19 19 C 1.38915 * 120.01257 * 359.74347 * 9 8 7 20 20 C 1.37986 * 120.00799 * 0.02562 * 19 9 8 21 21 C 1.38915 * 119.89967 * 0.02562 * 4 3 2 22 22 C 1.38111 * 119.94391 * 359.97438 * 21 4 3 23 23 C 1.50702 * 119.97090 * 179.97438 * 22 21 4 24 24 C 1.38471 * 120.05115 * 0.02562 * 22 21 4 25 25 F 1.35104 * 119.94575 * 179.97438 * 24 22 21 26 26 H 1.08999 * 109.46984 * 89.99818 * 1 2 3 27 27 H 1.08997 * 109.47283 * 210.00318 * 1 2 3 28 28 H 1.09002 * 109.47246 * 330.00106 * 1 2 3 29 29 H 1.07998 * 120.02613 * 359.97438 * 3 2 1 30 30 H 0.96989 * 120.00248 * 334.13996 * 5 4 3 31 31 H 1.08000 * 120.00947 * 0.02562 * 7 6 5 32 32 H 1.08006 * 119.99589 * 180.27336 * 8 7 6 33 33 H 0.96996 * 119.99889 * 179.97438 * 14 13 11 34 34 H 1.08003 * 119.99611 * 179.97438 * 19 9 8 35 35 H 1.08008 * 120.00570 * 179.97438 * 20 19 9 36 36 H 1.07998 * 120.02755 * 179.97438 * 21 4 3 37 37 H 1.09000 * 109.46554 * 270.02141 * 23 22 21 38 38 H 1.08993 * 109.47181 * 30.02468 * 23 22 21 39 39 H 1.09004 * 109.46863 * 150.02451 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1964 0.0000 4 6 3.5860 1.1958 0.0005 5 7 4.2867 2.4057 -0.0053 6 6 5.5795 2.4672 0.5228 7 6 5.9416 1.6324 1.5733 8 6 7.2193 1.6900 2.0912 9 6 8.1405 2.5897 1.5698 10 8 9.3960 2.6500 2.0834 11 6 10.1951 3.6374 1.6318 12 1 9.8589 4.2813 0.8326 13 6 11.4482 3.8263 2.1935 14 7 11.8580 3.0415 3.1671 15 14 12.5553 5.1948 1.5683 16 1 12.2951 6.4348 2.3429 17 1 13.9763 4.7968 1.7341 18 1 12.2746 5.4410 0.1310 19 6 7.7772 3.4278 0.5232 20 6 6.5012 3.3674 0.0017 21 6 4.2779 -0.0088 0.0005 22 6 3.5836 -1.2027 0.0005 23 6 4.3336 -2.5098 0.0000 24 6 2.1989 -1.1995 0.0000 25 9 1.5217 -2.3686 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6570 2.1317 -0.0004 30 1 3.8759 3.2023 -0.3758 31 1 5.2243 0.9357 1.9815 32 1 7.5022 1.0382 2.9047 33 1 12.7350 3.1735 3.5598 34 1 8.4935 4.1275 0.1183 35 1 6.2187 4.0194 -0.8118 36 1 5.3579 -0.0117 0.0005 37 1 4.5143 -2.8244 -1.0279 38 1 5.2863 -2.3823 0.5138 39 1 3.7424 -3.2681 0.5135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212609607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:54:54 Heat of formation + Delta-G solvation = -25.743191 kcal Electronic energy + Delta-G solvation = -23012.324663 eV Core-core repulsion = 19413.677427 eV Total energy + Delta-G solvation = -3598.647236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.74474 -39.99402 -38.83809 -37.05046 -34.61919 -33.76727 -32.25470 -30.60166 -29.98521 -27.78174 -27.06066 -26.56376 -25.24257 -22.41053 -21.89636 -21.13672 -20.51351 -18.06645 -17.45765 -17.39319 -17.06928 -16.14392 -15.84491 -15.63551 -14.59039 -14.39356 -14.04870 -13.91308 -13.58312 -13.49654 -13.43856 -13.22453 -13.16554 -13.09224 -12.82587 -12.71731 -12.30840 -12.14444 -11.93258 -11.68178 -11.47325 -11.42999 -11.06013 -10.92532 -10.73961 -10.47868 -9.87906 -9.39025 -8.84445 -8.73825 -8.32801 -7.94982 -6.63303 -6.47091 -4.04966 1.20159 1.23561 2.06149 2.30831 3.10576 3.11724 3.16318 3.50667 3.60512 3.94380 4.37042 4.49474 4.61619 4.66649 5.04931 5.10186 5.23401 5.23951 5.26817 5.35258 5.41085 5.49237 5.56090 5.61549 5.66513 5.79896 5.82644 6.02234 6.08733 6.15654 6.21903 6.28928 6.36110 6.43843 6.71654 6.73715 6.91690 6.98236 7.17796 7.29207 7.47048 7.77387 7.94025 7.96957 8.98257 9.68109 10.70780 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.002817 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.485273 B = 9937.794606 C =10504.524341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.167 4.167 4 C 0.205 3.795 5 N -0.679 5.679 6 C 0.066 3.934 7 C -0.106 4.106 8 C -0.165 4.165 9 C 0.137 3.863 10 O -0.178 6.178 11 C -0.391 4.391 12 H 0.091 0.909 13 C 0.039 3.961 14 N -0.863 5.863 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.268 1.268 19 C -0.208 4.208 20 C -0.104 4.104 21 C -0.154 4.154 22 C -0.075 4.075 23 C -0.115 4.115 24 C 0.037 3.963 25 F -0.146 7.146 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.403 0.597 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.270 0.730 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.756 -4.239 -7.053 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.190 4.190 4 C 0.104 3.896 5 N -0.301 5.301 6 C -0.028 4.028 7 C -0.127 4.127 8 C -0.185 4.185 9 C 0.083 3.917 10 O -0.082 6.082 11 C -0.467 4.467 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.498 5.498 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.228 4.228 20 C -0.125 4.125 21 C -0.176 4.176 22 C -0.076 4.076 23 C -0.172 4.172 24 C 0.016 3.984 25 F -0.125 7.125 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.238 0.762 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.311 -4.484 -6.674 19.088 hybrid contribution 0.303 0.963 -0.508 1.130 sum -17.008 -3.522 -7.182 18.795 Atomic orbital electron populations 1.20702 0.90488 1.03108 1.02563 1.19567 0.96373 0.91416 1.00601 1.20401 0.91972 0.97448 1.09145 1.17753 0.90530 0.86463 0.94875 1.41882 1.14306 1.08358 1.65581 1.17244 0.84866 1.02906 0.97770 1.20516 0.96078 1.00707 0.95405 1.20082 0.92225 1.02771 1.03443 1.19352 0.86290 0.93752 0.92305 1.83985 1.17401 1.47819 1.58969 1.21294 0.96615 1.09631 1.19201 0.89142 1.25277 0.96877 0.98480 0.95902 1.70049 1.19812 1.36718 1.23173 0.85723 0.78945 0.79741 0.79085 1.19892 1.20254 1.19222 1.21008 0.96737 1.04385 1.00671 1.20458 0.92568 0.99942 0.99503 1.20796 1.00795 0.89729 1.06272 1.19691 0.91607 0.96405 0.99922 1.20747 1.00257 0.93434 1.02766 1.17111 0.89253 0.80822 1.11183 1.91404 1.80145 1.46250 1.94660 0.90967 0.91274 0.91132 0.85417 0.76179 0.86525 0.86096 0.92010 0.85162 0.87201 0.84300 0.90836 0.90647 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.83 36.00 0.35 -0.62 16 2 C -0.08 -0.90 5.88 -104.58 -0.62 -1.51 16 3 C -0.17 -1.91 9.59 -39.38 -0.38 -2.29 16 4 C 0.21 2.69 6.04 -83.72 -0.51 2.18 16 5 N -0.68 -9.00 5.47 -8.35 -0.05 -9.05 16 6 C 0.07 1.09 5.94 -83.69 -0.50 0.59 16 7 C -0.11 -1.85 7.74 -39.39 -0.31 -2.16 16 8 C -0.17 -3.36 9.98 -39.42 -0.39 -3.75 16 9 C 0.14 3.17 6.65 -39.08 -0.26 2.91 16 10 O -0.18 -4.95 9.75 -0.01 0.00 -4.95 16 11 C -0.39 -10.67 9.48 30.87 0.29 -10.38 16 12 H 0.09 2.27 5.21 -52.49 -0.27 1.99 16 13 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 14 N -0.86 -24.96 13.67 55.48 0.76 -24.21 16 15 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 19 C -0.21 -4.29 9.16 -39.42 -0.36 -4.65 16 20 C -0.10 -1.79 9.95 -39.40 -0.39 -2.18 16 21 C -0.15 -2.11 7.51 -39.38 -0.30 -2.40 16 22 C -0.07 -0.96 5.88 -104.58 -0.62 -1.57 16 23 C -0.12 -1.25 9.83 36.01 0.35 -0.90 16 24 C 0.04 0.47 7.18 -39.41 -0.28 0.19 16 25 F -0.15 -1.87 15.67 2.25 0.04 -1.83 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.60 7.63 -51.93 -0.40 0.20 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.40 4.37 8.89 -40.82 -0.36 4.01 16 31 H 0.12 1.87 6.54 -52.49 -0.34 1.52 16 32 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.13 2.69 5.65 -52.48 -0.30 2.39 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.14 2.04 6.33 -52.49 -0.33 1.70 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.07 0.71 7.63 -51.93 -0.40 0.31 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -29.85 334.41 -7.72 -37.57 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.49 Total: 7.88 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -4.00 Total: -25.58 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.71 Total: -33.25 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: 0.00 Total: -4.95 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.85 -7.72 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.828 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds