Wall clock time and date at job start Fri Apr 10 2020 20:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38115 * 119.97498 * 2 1 4 4 C 1.38902 * 119.94843 * 179.97438 * 3 2 1 5 5 N 1.39820 * 120.04976 * 179.72422 * 4 3 2 6 6 C 1.39778 * 119.99762 * 154.14690 * 5 4 3 7 7 C 1.38980 * 120.00696 * 328.93265 * 6 5 4 8 8 C 1.37998 * 119.99063 * 179.77057 * 7 6 5 9 9 C 1.38917 * 120.00789 * 0.50778 * 8 7 6 10 10 O 1.35784 * 119.99330 * 179.72198 * 9 8 7 11 11 C 1.34813 * 116.99968 * 186.85480 * 10 9 8 12 12 H 1.08002 * 119.99841 * 354.61570 * 11 10 9 13 13 C 1.38614 * 119.99792 * 174.60581 * 11 10 9 14 14 N 1.31591 * 120.00168 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99865 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46992 * 90.00432 * 15 13 11 17 17 H 1.48502 * 109.47333 * 210.00136 * 15 13 11 18 18 H 1.48499 * 109.47415 * 330.00343 * 15 13 11 19 19 C 1.38915 * 120.01257 * 359.74347 * 9 8 7 20 20 C 1.37986 * 120.00799 * 0.02562 * 19 9 8 21 21 C 1.38915 * 119.89967 * 0.02562 * 4 3 2 22 22 C 1.38111 * 119.94391 * 359.97438 * 21 4 3 23 23 C 1.50702 * 119.97090 * 179.97438 * 22 21 4 24 24 C 1.38471 * 120.05115 * 0.02562 * 22 21 4 25 25 F 1.35104 * 119.94575 * 179.97438 * 24 22 21 26 26 H 1.08999 * 109.46984 * 89.99818 * 1 2 3 27 27 H 1.08997 * 109.47283 * 210.00318 * 1 2 3 28 28 H 1.09002 * 109.47246 * 330.00106 * 1 2 3 29 29 H 1.07998 * 120.02613 * 359.97438 * 3 2 1 30 30 H 0.96989 * 120.00248 * 334.13996 * 5 4 3 31 31 H 1.08000 * 120.00947 * 0.02562 * 7 6 5 32 32 H 1.08006 * 119.99589 * 180.27336 * 8 7 6 33 33 H 0.96996 * 119.99889 * 179.97438 * 14 13 11 34 34 H 1.08003 * 119.99611 * 179.97438 * 19 9 8 35 35 H 1.08008 * 120.00570 * 179.97438 * 20 19 9 36 36 H 1.07998 * 120.02755 * 179.97438 * 21 4 3 37 37 H 1.09000 * 109.46554 * 270.02141 * 23 22 21 38 38 H 1.08993 * 109.47181 * 30.02468 * 23 22 21 39 39 H 1.09004 * 109.46863 * 150.02451 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1964 0.0000 4 6 3.5860 1.1958 0.0005 5 7 4.2867 2.4057 -0.0053 6 6 5.5795 2.4672 0.5228 7 6 5.9416 1.6324 1.5733 8 6 7.2193 1.6900 2.0912 9 6 8.1405 2.5897 1.5698 10 8 9.3960 2.6500 2.0834 11 6 10.1951 3.6374 1.6318 12 1 9.8589 4.2813 0.8326 13 6 11.4482 3.8263 2.1935 14 7 11.8580 3.0415 3.1671 15 14 12.5553 5.1948 1.5683 16 1 12.2951 6.4348 2.3429 17 1 13.9763 4.7968 1.7341 18 1 12.2746 5.4410 0.1310 19 6 7.7772 3.4278 0.5232 20 6 6.5012 3.3674 0.0017 21 6 4.2779 -0.0088 0.0005 22 6 3.5836 -1.2027 0.0005 23 6 4.3336 -2.5098 0.0000 24 6 2.1989 -1.1995 0.0000 25 9 1.5217 -2.3686 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6570 2.1317 -0.0004 30 1 3.8759 3.2023 -0.3758 31 1 5.2243 0.9357 1.9815 32 1 7.5022 1.0382 2.9047 33 1 12.7350 3.1735 3.5598 34 1 8.4935 4.1275 0.1183 35 1 6.2187 4.0194 -0.8118 36 1 5.3579 -0.0117 0.0005 37 1 4.5143 -2.8244 -1.0279 38 1 5.2863 -2.3823 0.5138 39 1 3.7424 -3.2681 0.5135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212609607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:54:54 Heat of formation + Delta-G solvation = -41.559362 kcal Electronic energy + Delta-G solvation = -23013.010503 eV Core-core repulsion = 19413.677427 eV Total energy + Delta-G solvation = -3599.333077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.74029 -41.24429 -40.29172 -38.54492 -35.95603 -34.65850 -34.16519 -32.04410 -31.21574 -29.06134 -28.03369 -27.64135 -27.05558 -23.87903 -23.22854 -22.18175 -21.77484 -19.82945 -18.95157 -18.46745 -18.33101 -17.45070 -16.99195 -16.64292 -16.29481 -16.00971 -15.53003 -15.32858 -14.91501 -14.60459 -14.49592 -14.29949 -14.14237 -14.06561 -14.03448 -14.01061 -13.63609 -13.36915 -13.20408 -12.93845 -12.81103 -12.67061 -12.54681 -12.36475 -12.11475 -11.86730 -11.27338 -11.07471 -10.63786 -9.86359 -9.66049 -9.28119 -8.43614 -8.00675 -6.09270 0.16029 0.24699 0.51575 0.83145 1.37289 1.46241 1.54314 2.19921 2.35986 2.59330 2.86475 3.17534 3.41990 3.56300 3.72111 3.77395 4.05617 4.09754 4.19666 4.29903 4.37078 4.49188 4.51393 4.62998 4.70419 4.72721 4.79489 4.86314 5.00374 5.05365 5.10573 5.14832 5.23745 5.28944 5.34266 5.40284 5.43995 5.48265 5.68178 5.82425 5.99645 6.05296 6.49249 6.83548 7.01599 7.83707 8.79980 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.002817 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.485273 B = 9937.794606 C =10504.524341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.155 4.155 4 C 0.192 3.808 5 N -0.670 5.670 6 C 0.101 3.899 7 C -0.103 4.103 8 C -0.171 4.171 9 C 0.094 3.906 10 O -0.234 6.234 11 C -0.409 4.409 12 H 0.103 0.897 13 C -0.025 4.025 14 N -0.923 5.923 15 Si 1.017 2.983 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.251 1.251 19 C -0.209 4.209 20 C -0.102 4.102 21 C -0.169 4.169 22 C -0.083 4.083 23 C -0.116 4.116 24 C 0.026 3.974 25 F -0.148 7.148 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.157 0.843 30 H 0.420 0.580 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.271 0.729 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.972 -3.117 -8.994 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.177 4.177 4 C 0.092 3.908 5 N -0.295 5.295 6 C 0.006 3.994 7 C -0.124 4.124 8 C -0.191 4.191 9 C 0.044 3.956 10 O -0.141 6.141 11 C -0.485 4.485 12 H 0.121 0.879 13 C -0.222 4.222 14 N -0.562 5.562 15 Si 0.837 3.163 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.175 1.175 19 C -0.229 4.229 20 C -0.123 4.123 21 C -0.191 4.191 22 C -0.084 4.084 23 C -0.173 4.173 24 C 0.005 3.995 25 F -0.127 7.127 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.175 0.825 30 H 0.258 0.742 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.632 -3.376 -8.659 22.628 hybrid contribution 0.816 0.425 -0.020 0.920 sum -19.816 -2.951 -8.679 21.834 Atomic orbital electron populations 1.20788 0.88327 1.04027 1.03689 1.19942 0.98008 0.90839 0.99192 1.20669 0.91145 0.98620 1.07243 1.17872 0.91323 0.85867 0.95787 1.41757 1.12926 1.09390 1.65436 1.17325 0.85939 1.00405 0.95777 1.20644 0.95025 1.01224 0.95527 1.20229 0.93063 1.02253 1.03546 1.19825 0.85844 0.95909 0.94069 1.83948 1.19496 1.49349 1.61326 1.21806 0.97161 1.09971 1.19606 0.87937 1.26557 0.98346 1.01233 0.96072 1.70202 1.20623 1.39643 1.25725 0.84604 0.76387 0.76147 0.79209 1.18933 1.19880 1.17490 1.21104 0.98202 1.03623 0.99965 1.20737 0.91047 1.00511 0.99990 1.20751 1.00185 0.90591 1.07531 1.19863 0.92031 0.96806 0.99741 1.20787 1.00155 0.92913 1.03442 1.17360 0.89377 0.81368 1.11359 1.91400 1.80110 1.46487 1.94684 0.89623 0.91446 0.89209 0.82544 0.74196 0.84818 0.86666 0.91986 0.85649 0.83430 0.85800 0.89920 0.90695 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.83 71.23 0.70 -0.81 16 2 C -0.08 -1.52 5.88 -19.84 -0.12 -1.64 16 3 C -0.16 -2.88 9.59 22.40 0.21 -2.67 16 4 C 0.19 4.39 6.04 38.19 0.23 4.62 16 5 N -0.67 -15.20 5.47 -180.33 -0.99 -16.18 16 6 C 0.10 3.06 5.94 38.23 0.23 3.28 16 7 C -0.10 -3.49 7.74 22.39 0.17 -3.32 16 8 C -0.17 -7.15 9.98 22.38 0.22 -6.93 16 9 C 0.09 4.53 6.65 22.59 0.15 4.68 16 10 O -0.23 -13.87 9.75 -22.94 -0.22 -14.09 16 11 C -0.41 -23.40 9.48 67.91 0.64 -22.76 16 12 H 0.10 5.31 5.21 -2.91 -0.02 5.29 16 13 C -0.03 -1.41 5.49 84.82 0.47 -0.94 16 14 N -0.92 -56.53 13.67 21.61 0.30 -56.23 16 15 Si 1.02 42.33 29.55 68.60 2.03 44.36 16 16 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 19 C -0.21 -8.63 9.16 22.37 0.20 -8.42 16 20 C -0.10 -3.26 9.95 22.39 0.22 -3.04 16 21 C -0.17 -4.30 7.51 22.40 0.17 -4.13 16 22 C -0.08 -1.99 5.88 -19.84 -0.12 -2.10 16 23 C -0.12 -2.40 9.83 71.24 0.70 -1.70 16 24 C 0.03 0.60 7.18 22.38 0.16 0.76 16 25 F -0.15 -3.50 15.67 44.97 0.70 -2.80 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.96 7.63 -2.39 -0.02 0.94 16 28 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 29 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.42 7.06 8.89 -92.72 -0.82 6.24 16 31 H 0.13 4.07 6.54 -2.91 -0.02 4.05 16 32 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.13 5.22 5.65 -2.91 -0.02 5.20 16 35 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 36 H 0.12 3.51 6.33 -2.91 -0.02 3.49 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.07 1.43 7.63 -2.39 -0.02 1.41 16 Total: -1.00 -69.13 334.41 6.34 -62.79 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.27 Total: 27.28 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 4.25 Total: -45.12 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -0.69 Total: -72.42 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.22 Total: -14.09 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.70 Total: -2.80 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.13 6.34 -62.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.226 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds