Wall clock time and date at job start Fri Apr 10 2020 20:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00282 * 2 1 4 4 H 1.48496 * 109.47015 * 240.00023 * 3 2 1 5 5 H 1.48506 * 109.46780 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47040 * 119.99785 * 3 2 1 7 7 C 1.37880 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46707 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46791 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.46730 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54680 * 68.37481 * 12 11 10 14 14 O 1.42106 * 110.54030 * 291.62373 * 12 11 10 15 15 N 1.65428 * 104.44595 * 180.02562 * 12 11 10 16 16 C 1.47233 * 122.36307 * 89.99490 * 15 12 11 17 17 C 1.52584 * 108.53605 * 119.34634 * 16 15 12 18 18 C 1.51936 * 112.83446 * 51.29735 * 17 16 15 19 19 C 1.51925 * 113.93111 * 313.41525 * 18 17 16 20 20 C 1.47233 * 122.35590 * 269.99519 * 15 12 11 21 21 C 1.52616 * 108.53393 * 119.48897 * 20 15 12 22 22 C 1.51994 * 112.64418 * 51.74443 * 21 20 15 23 23 C 1.51991 * 113.62168 * 312.45694 * 22 21 20 24 24 H 0.97000 * 119.99574 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46878 * 60.00171 * 9 7 2 26 26 H 1.08995 * 109.46730 * 299.99536 * 9 7 2 27 27 H 1.08999 * 109.46672 * 59.99922 * 10 9 7 28 28 H 1.08993 * 109.47233 * 299.99953 * 10 9 7 29 29 H 1.08997 * 109.47124 * 59.99847 * 11 10 9 30 30 H 1.08995 * 109.46779 * 299.99941 * 11 10 9 31 31 H 1.10126 * 109.25185 * 359.83227 * 16 15 12 32 32 H 1.09763 * 109.07902 * 289.73311 * 17 16 15 33 33 H 1.09773 * 109.05240 * 172.81149 * 17 16 15 34 34 H 1.08677 * 111.00114 * 79.64600 * 18 17 16 35 35 H 1.10938 * 107.47355 * 194.45188 * 18 17 16 36 36 H 1.09801 * 109.14900 * 167.82107 * 19 18 17 37 37 H 1.09769 * 109.20047 * 284.79686 * 19 18 17 38 38 H 1.10129 * 109.25855 * 0.02562 * 20 15 12 39 39 H 1.09738 * 109.07989 * 290.33128 * 21 20 15 40 40 H 1.09715 * 109.11890 * 173.24520 * 21 20 15 41 41 H 1.10846 * 107.57327 * 193.49538 * 22 21 20 42 42 H 1.08622 * 110.99493 * 78.41402 * 22 21 20 43 43 H 1.09746 * 109.18072 * 285.89675 * 23 22 21 44 44 H 1.09743 * 109.19715 * 168.77575 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6589 -6.3659 0.0019 13 8 3.3557 -6.4257 1.2389 14 8 3.3557 -6.4269 -1.2351 15 7 1.7095 -7.7206 0.0019 16 6 1.2576 -8.3662 -1.2418 17 6 1.7975 -9.7930 -1.2716 18 6 1.4930 -10.5654 0.0009 19 6 1.7905 -9.7945 1.2758 20 6 1.2569 -8.3657 1.2456 21 6 -0.2689 -8.3481 1.2737 22 6 -0.8841 -8.9113 0.0030 23 6 -0.2680 -8.3552 -1.2703 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.8531 -5.0451 -0.8885 30 1 0.8538 -5.0446 0.8914 31 1 1.6478 -7.8047 -2.1050 32 1 2.8840 -9.7624 -1.4242 33 1 1.3619 -10.3232 -2.1284 34 1 0.4707 -10.9341 -0.0025 35 1 2.1334 -11.4713 0.0021 36 1 1.3467 -10.3245 2.1290 37 1 2.8759 -9.7688 1.4371 38 1 1.6487 -7.8053 2.1089 39 1 -0.6133 -7.3157 1.4144 40 1 -0.6192 -8.9315 2.1343 41 1 -1.9585 -8.6384 0.0019 42 1 -0.8584 -9.9972 0.0063 43 1 -0.6166 -7.3254 -1.4196 44 1 -0.6153 -8.9463 -2.1272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610266607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:54:45 Heat of formation + Delta-G solvation = -102.030918 kcal Electronic energy + Delta-G solvation = -23937.284206 eV Core-core repulsion = 20594.233142 eV Total energy + Delta-G solvation = -3343.051064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13979 -36.92816 -35.70483 -34.65312 -33.10878 -32.88967 -32.49060 -32.16448 -27.78303 -26.36753 -25.28739 -23.67213 -22.32579 -21.17688 -20.70888 -19.73777 -18.05436 -17.32331 -16.59169 -15.98830 -15.69107 -15.47414 -14.79158 -14.54366 -14.39964 -14.36159 -14.12321 -13.77215 -13.67079 -13.45359 -12.58118 -12.32718 -12.14147 -12.12549 -11.90212 -11.79299 -11.75214 -11.63449 -11.57703 -11.21412 -11.18823 -11.14753 -10.89081 -10.85836 -10.61359 -10.45193 -10.20202 -10.09865 -9.93813 -9.42482 -9.19379 -8.77872 -8.39914 -6.05060 -4.08174 0.48058 2.77849 3.32589 3.36281 3.39640 4.05276 4.28024 4.28494 4.43091 4.62707 4.64241 4.70122 4.80013 4.99322 4.99380 5.03392 5.06313 5.14080 5.15942 5.29958 5.31159 5.45466 5.56531 5.66019 5.73477 5.74181 5.78035 5.82288 5.84729 5.92028 5.95422 5.96450 6.06702 6.27495 6.33375 6.36517 6.47057 6.59071 6.88439 7.57448 7.67779 7.92881 8.33559 8.97809 9.56429 11.06133 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.027618 B = 0.003605 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.593178 B = 7765.006452 C = 8091.111691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.601 3.399 13 O -0.961 6.961 14 O -0.961 6.961 15 N -0.998 5.998 16 C 0.155 3.845 17 C -0.120 4.120 18 C -0.111 4.111 19 C -0.120 4.120 20 C 0.155 3.845 21 C -0.127 4.127 22 C -0.111 4.111 23 C -0.127 4.127 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 -22.980 0.004 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.699 3.301 13 O -0.951 6.951 14 O -0.951 6.951 15 N -0.834 5.834 16 C 0.049 3.951 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.159 4.159 20 C 0.049 3.951 21 C -0.166 4.166 22 C -0.148 4.148 23 C -0.166 4.166 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.442 -22.859 0.004 22.905 hybrid contribution -0.376 1.181 0.000 1.239 sum -1.818 -21.679 0.004 21.755 Atomic orbital electron populations 1.69950 1.06091 1.26870 1.50552 1.25016 0.94883 0.99339 0.95081 0.86616 0.79582 0.82826 0.78778 1.20105 1.21235 1.20110 1.21227 0.93221 0.90927 1.51160 0.92434 1.19051 0.93509 0.90428 0.97684 1.21498 0.99378 0.91814 1.01832 1.30622 1.16436 1.15947 1.11060 1.05298 0.75792 0.74834 0.74146 1.93548 1.70330 1.85906 1.45347 1.93549 1.70341 1.85899 1.45347 1.58276 1.70129 1.43063 1.11951 1.20965 0.93799 0.94006 0.86347 1.21566 1.01672 0.94942 0.97711 1.21151 1.01886 0.97698 0.94065 1.21555 1.01700 0.94915 0.97702 1.20967 0.93810 0.94001 0.86350 1.21687 0.94739 1.02187 0.97988 1.21145 0.99104 1.00667 0.93912 1.21677 0.94721 1.02209 0.97973 0.92852 0.96160 0.96149 0.91692 0.91682 0.85575 0.85584 0.88232 0.91718 0.91214 0.91426 0.93118 0.91218 0.91729 0.88233 0.91558 0.91080 0.92869 0.91432 0.91566 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 10 C -0.11 -2.20 5.16 -26.73 -0.14 -2.34 16 11 C -0.61 -9.75 6.18 37.16 0.23 -9.52 16 12 S 2.60 40.42 5.50 -107.50 -0.59 39.83 16 13 O -0.96 -17.35 16.79 -57.54 -0.97 -18.31 16 14 O -0.96 -17.35 16.79 -57.54 -0.97 -18.31 16 15 N -1.00 -11.99 2.77 -99.29 -0.27 -12.26 16 16 C 0.15 1.60 3.17 -67.96 -0.22 1.39 16 17 C -0.12 -1.08 5.46 -27.48 -0.15 -1.23 16 18 C -0.11 -0.89 4.96 -27.82 -0.14 -1.02 16 19 C -0.12 -1.08 5.45 -27.51 -0.15 -1.23 16 20 C 0.15 1.60 3.17 -67.95 -0.22 1.38 16 21 C -0.13 -1.09 5.46 -27.44 -0.15 -1.24 16 22 C -0.11 -0.87 4.99 -27.76 -0.14 -1.01 16 23 C -0.13 -1.09 5.46 -27.46 -0.15 -1.24 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.13 1.82 8.14 -51.93 -0.42 1.40 16 30 H 0.13 1.82 8.14 -51.93 -0.42 1.39 16 31 H 0.10 1.09 7.18 -51.29 -0.37 0.72 16 32 H 0.06 0.65 8.21 -51.50 -0.42 0.23 16 33 H 0.07 0.50 8.21 -51.49 -0.42 0.08 16 34 H 0.07 0.46 5.64 -52.11 -0.29 0.17 16 35 H 0.05 0.37 8.29 -50.81 -0.42 -0.05 16 36 H 0.07 0.50 8.21 -51.47 -0.42 0.08 16 37 H 0.06 0.65 8.21 -51.49 -0.42 0.23 16 38 H 0.10 1.09 7.18 -51.29 -0.37 0.72 16 39 H 0.07 0.60 8.20 -51.51 -0.42 0.18 16 40 H 0.07 0.50 8.20 -51.52 -0.42 0.08 16 41 H 0.05 0.40 8.29 -50.87 -0.42 -0.02 16 42 H 0.07 0.46 5.59 -52.14 -0.29 0.17 16 43 H 0.07 0.60 8.20 -51.51 -0.42 0.18 16 44 H 0.07 0.50 8.20 -51.51 -0.42 0.08 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -33.89 347.69 -11.23 -45.12 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.62 Total: -2.89 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -1.76 Total: -29.11 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.46 Total: -38.24 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.93 Total: -36.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 40.42 SS G_CDS: -0.59 Total: 39.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.89 -11.23 -45.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610266607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.907 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds