Wall clock time and date at job start Fri Apr 10 2020 20:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46744 * 2 1 4 4 C 1.46504 * 119.99825 * 276.75180 * 3 2 1 5 5 C 1.52993 * 109.47197 * 270.00146 * 4 3 2 6 6 F 1.39901 * 109.47452 * 300.00095 * 5 4 3 7 7 F 1.39904 * 109.46972 * 60.00433 * 5 4 3 8 8 C 1.34775 * 120.00237 * 96.75915 * 3 2 1 9 9 O 1.21605 * 120.00202 * 186.73605 * 8 3 2 10 10 C 1.47428 * 119.99799 * 6.72939 * 8 3 2 11 11 C 1.41287 * 126.41828 * 332.55717 * 10 8 3 12 12 N 1.30442 * 108.02524 * 179.71876 * 11 10 8 13 13 N 1.39937 * 108.89735 * 0.40325 * 12 11 10 14 14 C 1.46504 * 125.75468 * 179.85051 * 13 12 11 15 15 C 1.50701 * 109.46973 * 269.69001 * 14 13 12 16 16 H 1.07996 * 119.99774 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99415 * 179.72455 * 15 14 13 18 18 N 1.31519 * 119.99510 * 180.27875 * 17 15 14 19 19 Si 1.86793 * 120.00524 * 0.27676 * 17 15 14 20 20 H 1.48501 * 109.47116 * 89.99644 * 19 17 15 21 21 H 1.48500 * 109.47460 * 210.00205 * 19 17 15 22 22 H 1.48506 * 109.47042 * 330.00174 * 19 17 15 23 23 C 1.34252 * 108.48884 * 359.58628 * 13 12 11 24 24 C 1.50701 * 126.28920 * 180.22139 * 23 13 12 25 25 H 1.09002 * 109.47229 * 299.99794 * 1 2 3 26 26 H 1.09000 * 109.47515 * 60.00079 * 1 2 3 27 27 H 1.09003 * 109.47490 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47149 * 240.00087 * 2 1 3 29 29 H 1.09004 * 109.47177 * 119.99566 * 2 1 3 30 30 H 1.08999 * 109.47049 * 30.00796 * 4 3 2 31 31 H 1.09006 * 109.46542 * 150.00389 * 4 3 2 32 32 H 1.09005 * 109.47112 * 179.97438 * 5 4 3 33 33 H 1.08002 * 125.99090 * 359.94988 * 11 10 8 34 34 H 1.08998 * 109.46651 * 149.68906 * 14 13 12 35 35 H 1.09002 * 109.46715 * 29.69074 * 14 13 12 36 36 H 0.96998 * 120.00000 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.47198 * 90.02881 * 24 23 13 38 38 H 1.09004 * 109.46987 * 210.02114 * 24 23 13 39 39 H 1.09000 * 109.47606 * 330.02455 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1217 2.1216 -1.2600 5 6 3.5082 1.9019 -1.8682 6 9 4.4859 2.3582 -0.9776 7 9 3.6997 0.5376 -2.1119 8 6 2.3723 1.9709 1.1590 9 8 2.6603 3.1522 1.1772 10 6 2.4105 1.1837 2.4050 11 6 1.6396 0.0359 2.6959 12 7 1.9629 -0.3752 3.8909 13 7 2.9350 0.4826 4.4177 14 6 3.5562 0.3635 5.7392 15 6 2.7518 1.1465 6.7447 16 1 1.8662 1.6791 6.4308 17 6 3.1430 1.1777 8.0664 18 7 2.4380 1.8566 8.9449 19 14 4.6743 0.2560 8.6094 20 1 5.8555 1.1489 8.4968 21 1 4.5157 -0.1797 10.0201 22 1 4.8690 -0.9341 7.7427 23 6 3.2065 1.4295 3.5057 24 6 4.1979 2.5546 3.6560 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3600 1.7661 -1.9539 31 1 1.9725 3.1846 -1.0700 32 1 3.5850 2.4524 -2.8059 33 1 0.9130 -0.4231 2.0419 34 1 4.5716 0.7576 5.7001 35 1 3.5845 -0.6855 6.0341 36 1 2.7133 1.8789 9.8747 37 1 5.1732 2.2305 3.2927 38 1 3.8620 3.4147 3.0768 39 1 4.2756 2.8324 4.7072 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889939708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:54:50 Heat of formation + Delta-G solvation = -52.623535 kcal Electronic energy + Delta-G solvation = -25346.598524 eV Core-core repulsion = 21348.309195 eV Total energy + Delta-G solvation = -3998.289329 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.97198 -46.98133 -41.03749 -39.12886 -36.08357 -33.93152 -32.34697 -31.81141 -31.10136 -29.34759 -27.74842 -26.66372 -23.86340 -23.53301 -22.84901 -21.29148 -19.88150 -18.50302 -17.78545 -17.47739 -17.21104 -16.75583 -16.48998 -15.68804 -15.57872 -14.88504 -14.59843 -14.44727 -13.94232 -13.72951 -13.61200 -13.34920 -13.09525 -12.80746 -12.63539 -12.59385 -12.50854 -12.38019 -12.27056 -12.04603 -11.84334 -11.57908 -11.45803 -11.31877 -10.93416 -10.84679 -10.38543 -10.23336 -9.79163 -9.47243 -8.84485 -8.77157 -8.60417 -7.95001 -6.32184 -4.37008 2.13090 2.69525 2.83514 3.10418 3.16828 3.19077 3.30409 3.58291 3.80165 4.11965 4.16334 4.30870 4.61328 4.86210 4.90898 4.99662 5.08780 5.11575 5.22042 5.28088 5.34610 5.54904 5.60046 5.65898 5.73908 5.84319 5.99201 6.08285 6.26595 6.40752 6.47820 6.52585 6.60231 7.00845 7.19058 7.44698 7.57251 8.20750 8.27036 8.46265 8.71779 9.21633 10.80059 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.003909 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.443559 B = 7161.683238 C = 7566.185465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 N -0.614 5.614 4 C 0.070 3.930 5 C 0.243 3.757 6 F -0.195 7.195 7 F -0.207 7.207 8 C 0.609 3.391 9 O -0.540 6.540 10 C -0.326 4.326 11 C 0.045 3.955 12 N -0.292 5.292 13 N -0.312 5.312 14 C 0.224 3.776 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.082 3.918 18 N -0.883 5.883 19 Si 0.872 3.128 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C 0.167 3.833 24 C -0.104 4.104 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.191 0.809 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.270 0.730 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -2.252 -22.150 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.041 4.041 3 N -0.347 5.347 4 C -0.055 4.055 5 C 0.188 3.812 6 F -0.177 7.177 7 F -0.189 7.189 8 C 0.401 3.599 9 O -0.418 6.418 10 C -0.341 4.341 11 C -0.141 4.141 12 N -0.112 5.112 13 N -0.089 5.089 14 C 0.106 3.894 15 C -0.584 4.584 16 H 0.100 0.900 17 C -0.123 4.123 18 N -0.519 5.519 19 Si 0.698 3.302 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.188 1.188 23 C 0.030 3.970 24 C -0.163 4.163 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.207 0.793 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.431 -2.518 -20.802 20.958 hybrid contribution 0.782 -0.036 -0.184 0.804 sum 1.212 -2.554 -20.986 21.175 Atomic orbital electron populations 1.22290 0.95861 1.02625 1.02836 1.22215 0.94310 0.82457 1.05115 1.47573 1.67251 1.14432 1.05464 1.22481 0.94505 1.01144 0.87387 1.22529 0.88437 0.77426 0.92780 1.93042 1.64988 1.88458 1.71167 1.92961 1.96051 1.34868 1.94991 1.17394 0.74636 0.85859 0.82014 1.90697 1.49623 1.15434 1.86009 1.19560 1.11662 1.05235 0.97653 1.24318 1.00299 0.95107 0.94394 1.77158 1.06706 1.16964 1.10361 1.48902 1.27909 1.18383 1.13695 1.20156 0.93357 0.99973 0.75937 1.21105 1.13116 1.32258 0.91915 0.89981 1.24791 0.96865 0.94702 0.95967 1.69867 1.38727 1.40109 1.03204 0.86906 0.83378 0.80820 0.79082 1.19488 1.20362 1.18786 1.21392 0.96179 0.91483 0.87905 1.20674 0.95701 0.95142 1.04733 0.91625 0.92290 0.91080 0.90389 0.87510 0.87855 0.86782 0.87020 0.79258 0.93443 0.92691 0.91972 0.90668 0.88237 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.16 37.16 0.34 -1.15 16 2 C 0.08 0.84 5.48 -4.04 -0.02 0.81 16 3 N -0.61 -7.71 2.39 -174.95 -0.42 -8.13 16 4 C 0.07 0.64 5.77 -4.04 -0.02 0.62 16 5 C 0.24 2.28 5.60 37.15 0.21 2.49 16 6 F -0.20 -2.70 16.57 2.25 0.04 -2.66 16 7 F -0.21 -2.23 16.14 2.25 0.04 -2.19 16 8 C 0.61 10.29 7.07 -12.52 -0.09 10.21 16 9 O -0.54 -10.34 14.50 5.27 0.08 -10.26 16 10 C -0.33 -6.07 5.72 -105.07 -0.60 -6.67 16 11 C 0.04 0.79 9.52 -16.98 -0.16 0.63 16 12 N -0.29 -6.22 12.50 30.86 0.39 -5.84 16 13 N -0.31 -6.98 3.56 -57.77 -0.21 -7.18 16 14 C 0.22 5.27 4.85 -5.19 -0.03 5.24 16 15 C -0.55 -15.05 9.94 -34.44 -0.34 -15.39 16 16 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.88 -25.97 13.96 55.43 0.77 -25.19 16 19 Si 0.87 19.83 27.47 -169.99 -4.67 15.16 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 23 C 0.17 3.41 7.00 -81.60 -0.57 2.84 16 24 C -0.10 -1.89 9.63 36.01 0.35 -1.54 16 25 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 26 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.69 7.15 -51.93 -0.37 0.32 16 29 H 0.11 1.26 4.03 -51.93 -0.21 1.05 16 30 H 0.10 0.60 8.00 -51.93 -0.42 0.18 16 31 H 0.11 1.11 7.34 -51.93 -0.38 0.73 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.19 2.55 4.13 -52.49 -0.22 2.33 16 34 H 0.05 1.03 7.06 -51.93 -0.37 0.66 16 35 H 0.06 1.29 7.19 -51.93 -0.37 0.92 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.81 6.42 -51.93 -0.33 1.48 16 39 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -33.79 328.28 -4.80 -38.59 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.73 Total: 2.53 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.04 Total: 0.23 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.53 Total: -46.34 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.07 Total: -4.86 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.79 -4.80 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889939708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.037 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds