Wall clock time and date at job start Fri Apr 10 2020 20:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99546 * 2 1 4 4 C 1.52996 * 109.47401 * 269.99765 * 3 2 1 5 5 H 1.09003 * 115.54800 * 29.32949 * 4 3 2 6 6 C 1.52999 * 117.50055 * 243.62293 * 4 3 2 7 7 C 1.52997 * 117.50314 * 174.99808 * 4 3 2 8 8 C 1.52995 * 117.50357 * 214.98148 * 7 4 3 9 9 C 1.53005 * 117.49541 * 359.97438 * 7 4 3 10 10 C 1.34775 * 120.00819 * 179.97438 * 2 1 3 11 11 O 1.21278 * 120.00452 * 180.02562 * 10 2 1 12 12 C 1.50701 * 119.99380 * 0.02562 * 10 2 1 13 13 C 1.50705 * 109.46944 * 179.97438 * 12 10 2 14 14 C 1.37629 * 120.13045 * 265.00375 * 13 12 10 15 15 C 1.38614 * 120.25125 * 179.97438 * 14 13 12 16 16 C 1.38664 * 120.49831 * 0.02562 * 15 14 13 17 17 C 1.37600 * 120.24756 * 359.97438 * 16 15 14 18 18 C 1.40698 * 120.12453 * 84.97877 * 13 12 10 19 19 C 1.41399 * 120.24636 * 359.97438 * 18 13 12 20 20 H 1.08009 * 119.99602 * 334.03477 * 19 18 13 21 21 C 1.39942 * 120.00114 * 154.02982 * 19 18 13 22 22 N 1.30821 * 120.00115 * 343.68582 * 21 19 18 23 23 Si 1.86803 * 119.99762 * 163.67947 * 21 19 18 24 24 H 1.48501 * 109.47131 * 90.00337 * 23 21 19 25 25 H 1.48497 * 109.47187 * 210.00251 * 23 21 19 26 26 H 1.48500 * 109.47368 * 330.00189 * 23 21 19 27 27 H 1.08993 * 109.47433 * 269.99563 * 1 2 3 28 28 H 1.08994 * 109.47794 * 30.00569 * 1 2 3 29 29 H 1.09007 * 109.46951 * 149.99894 * 1 2 3 30 30 H 1.09001 * 109.47282 * 29.99942 * 3 2 1 31 31 H 1.09003 * 109.47143 * 149.99884 * 3 2 1 32 32 H 1.08998 * 117.49522 * 359.97438 * 6 4 3 33 33 H 1.09008 * 117.49652 * 145.01602 * 6 4 3 34 34 H 1.09000 * 109.47178 * 59.99743 * 8 7 4 35 35 H 1.09001 * 109.47387 * 180.02562 * 8 7 4 36 36 H 1.09001 * 109.47146 * 300.00099 * 8 7 4 37 37 H 1.08991 * 109.47572 * 59.99757 * 9 7 4 38 38 H 1.09002 * 109.47127 * 180.02562 * 9 7 4 39 39 H 1.09003 * 109.46794 * 299.99531 * 9 7 4 40 40 H 1.09005 * 109.47213 * 60.00107 * 12 10 2 41 41 H 1.08996 * 109.47406 * 300.00264 * 12 10 2 42 42 H 1.07999 * 119.87708 * 0.25526 * 14 13 12 43 43 H 1.07999 * 119.75142 * 179.97438 * 15 14 13 44 44 H 1.07995 * 119.87471 * 179.97438 * 16 15 14 45 45 H 1.07994 * 120.12565 * 179.97438 * 17 16 15 46 46 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 1.7095 1.3870 -2.1715 6 6 3.9073 1.7990 -1.9074 7 6 3.1049 3.0775 -1.6579 8 6 2.6651 3.8856 -2.8803 9 6 3.4519 3.8985 -0.4142 10 6 2.1390 -1.1671 0.0005 11 8 3.3518 -1.1670 0.0010 12 6 1.3855 -2.4722 0.0005 13 6 2.3649 -3.6176 0.0005 14 6 2.7351 -4.2101 -1.1853 15 6 3.6361 -5.2634 -1.1882 16 6 4.1741 -5.7327 0.0005 17 6 3.8183 -5.1555 1.1979 18 6 2.9048 -4.0851 1.2128 19 6 2.5327 -3.4835 2.4371 20 1 2.1981 -2.4567 2.4546 21 6 2.5977 -4.2186 3.6262 22 7 2.6878 -5.5230 3.5847 23 14 2.5561 -3.3370 5.2726 24 1 1.1485 -3.2003 5.7255 25 1 3.3241 -4.1207 6.2732 26 1 3.1627 -1.9893 5.1280 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8898 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6082 2.0285 0.5138 31 1 3.1498 1.1386 0.5139 32 1 4.6828 1.5429 -1.1856 33 1 4.1219 1.5334 -2.9427 34 1 1.5950 4.0837 -2.8191 35 1 3.2089 4.8299 -2.9065 36 1 2.8784 3.3186 -3.7865 37 1 4.1522 3.3397 0.2064 38 1 3.9066 4.8418 -0.7168 39 1 2.5434 4.0993 0.1537 40 1 0.7592 -2.5302 -0.8897 41 1 0.7585 -2.5298 0.8902 42 1 2.3255 -3.8500 -2.1175 43 1 3.9207 -5.7227 -2.1234 44 1 4.8750 -6.5542 -0.0135 45 1 4.2382 -5.5228 2.1226 46 1 2.7332 -6.0325 4.4090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856460760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:57:00 Heat of formation + Delta-G solvation = -3.504057 kcal Electronic energy + Delta-G solvation = -24726.365105 eV Core-core repulsion = 21387.975629 eV Total energy + Delta-G solvation = -3338.389475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.65019 -38.36935 -37.21295 -34.85596 -33.57071 -31.75056 -29.88589 -29.38962 -28.04739 -27.35444 -26.71113 -25.43106 -24.59634 -21.30065 -20.86906 -19.95985 -18.79564 -18.43090 -17.10089 -16.47661 -15.85998 -15.43772 -15.17462 -14.67538 -14.31036 -14.24269 -13.83424 -13.50729 -13.43588 -12.97448 -12.72921 -12.59048 -12.49965 -12.48232 -12.30261 -12.12072 -11.88003 -11.59758 -11.52549 -11.44154 -11.20805 -11.08057 -10.92648 -10.91744 -10.65211 -10.35536 -9.77012 -9.66202 -9.42785 -9.31684 -9.11290 -9.01386 -8.26508 -7.25696 -7.23155 -6.68983 -4.29029 2.82675 3.00946 3.09146 3.14729 3.31082 3.37518 3.44504 3.79927 3.97440 4.65230 4.70048 4.72412 4.85214 4.98969 5.23019 5.35124 5.43098 5.46888 5.50161 5.57770 5.70043 5.74975 5.81042 5.82095 5.83236 5.87066 5.93404 5.97766 6.00006 6.09600 6.18828 6.27400 6.33209 6.34404 6.48819 6.56165 6.84180 6.93030 7.13624 7.34920 7.47697 7.68785 7.85772 7.99045 8.12872 8.18315 8.37076 8.70055 8.92051 8.97222 9.07108 10.25314 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.004356 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.726346 B = 6426.698789 C = 7473.236328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.630 5.630 3 C 0.149 3.851 4 C -0.156 4.156 5 H 0.101 0.899 6 C -0.159 4.159 7 C -0.132 4.132 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.517 3.483 11 O -0.515 6.515 12 C -0.069 4.069 13 C -0.180 4.180 14 C -0.081 4.081 15 C -0.239 4.239 16 C -0.108 4.108 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.456 4.456 20 H 0.073 0.927 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.262 1.262 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 14.404 -6.073 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.026 3.974 4 C -0.175 4.175 5 H 0.119 0.881 6 C -0.196 4.196 7 C -0.133 4.133 8 C -0.169 4.169 9 C -0.173 4.173 10 C 0.306 3.694 11 O -0.389 6.389 12 C -0.108 4.108 13 C -0.181 4.181 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.091 0.909 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.186 1.186 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.079 14.171 -5.894 15.880 hybrid contribution -0.138 0.262 0.700 0.761 sum -4.217 14.433 -5.194 15.908 Atomic orbital electron populations 1.21713 0.80172 1.02638 1.01621 1.47983 1.06497 1.05866 1.76279 1.20867 0.97923 0.84848 0.93803 1.22884 0.96851 0.99032 0.98750 0.88121 1.23251 0.94587 0.99591 1.02196 1.21607 1.04922 0.89148 0.97607 1.21328 1.00855 0.99226 0.95520 1.21341 1.01211 0.99150 0.95569 1.21221 0.88479 0.84935 0.74784 1.90662 1.14115 1.86918 1.47172 1.20294 0.97777 0.90261 1.02496 1.19081 1.04245 1.00902 0.93915 1.20283 0.97853 0.96450 0.95383 1.20297 1.06326 1.03043 0.96202 1.20669 0.99516 0.98914 0.93505 1.21285 1.00185 1.00052 0.96354 1.17325 0.88249 0.90354 0.91368 1.19456 1.39420 0.98752 0.90957 0.90878 1.25863 0.92436 0.94521 1.01153 1.69822 1.35996 1.06369 1.30018 0.86431 0.79017 0.80784 0.81222 1.19550 1.20093 1.18579 0.92841 0.91813 0.90901 0.90978 0.89909 0.88449 0.89284 0.92480 0.92305 0.92637 0.92182 0.92346 0.92337 0.90826 0.88719 0.89886 0.89733 0.89634 0.86581 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.24 59.84 0.61 1.55 16 2 N -0.63 -9.80 2.87 -181.58 -0.52 -10.33 16 3 C 0.15 2.07 4.77 -4.04 -0.02 2.05 16 4 C -0.16 -1.98 5.73 -90.62 -0.52 -2.50 16 5 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 6 C -0.16 -2.08 9.47 -26.73 -0.25 -2.34 16 7 C -0.13 -1.41 2.70 -154.51 -0.42 -1.83 16 8 C -0.11 -1.00 9.85 37.15 0.37 -0.63 16 9 C -0.12 -1.11 8.86 37.16 0.33 -0.78 16 10 C 0.52 10.42 7.30 -10.99 -0.08 10.34 16 11 O -0.52 -12.57 15.61 5.56 0.09 -12.48 16 12 C -0.07 -1.39 3.73 -29.03 -0.11 -1.49 16 13 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 17 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 18 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 19 C -0.46 -12.21 8.14 -37.74 -0.31 -12.51 16 20 H 0.07 1.92 6.68 -52.48 -0.35 1.57 16 21 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 22 N -0.80 -20.82 10.97 55.55 0.61 -20.21 16 23 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.07 0.79 6.44 -51.92 -0.33 0.46 16 30 H 0.07 0.83 7.70 -51.93 -0.40 0.43 16 31 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 32 H 0.10 1.41 7.94 -51.93 -0.41 1.00 16 33 H 0.09 1.13 8.05 -51.92 -0.42 0.71 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 36 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 37 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 38 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 39 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 40 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 41 H 0.09 1.89 7.03 -51.93 -0.37 1.52 16 42 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 45 H 0.12 3.24 6.22 -52.49 -0.33 2.92 16 46 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -30.91 373.69 -9.78 -40.69 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.50 Total: 6.99 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -3.05 Total: -24.36 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.09 Total: -30.54 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.91 -9.78 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856460760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.184 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds