Wall clock time and date at job start Fri Apr 10 2020 20:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99546 * 2 1 4 4 C 1.52996 * 109.47401 * 269.99765 * 3 2 1 5 5 H 1.09003 * 115.54800 * 29.32949 * 4 3 2 6 6 C 1.52999 * 117.50055 * 243.62293 * 4 3 2 7 7 C 1.52997 * 117.50314 * 174.99808 * 4 3 2 8 8 C 1.52995 * 117.50357 * 214.98148 * 7 4 3 9 9 C 1.53005 * 117.49541 * 359.97438 * 7 4 3 10 10 C 1.34775 * 120.00819 * 179.97438 * 2 1 3 11 11 O 1.21278 * 120.00452 * 180.02562 * 10 2 1 12 12 C 1.50701 * 119.99380 * 0.02562 * 10 2 1 13 13 C 1.50705 * 109.46944 * 179.97438 * 12 10 2 14 14 C 1.37629 * 120.13045 * 265.00375 * 13 12 10 15 15 C 1.38614 * 120.25125 * 179.97438 * 14 13 12 16 16 C 1.38664 * 120.49831 * 0.02562 * 15 14 13 17 17 C 1.37600 * 120.24756 * 359.97438 * 16 15 14 18 18 C 1.40698 * 120.12453 * 84.97877 * 13 12 10 19 19 C 1.41399 * 120.24636 * 359.97438 * 18 13 12 20 20 H 1.08009 * 119.99602 * 334.03477 * 19 18 13 21 21 C 1.39942 * 120.00114 * 154.02982 * 19 18 13 22 22 N 1.30821 * 120.00115 * 343.68582 * 21 19 18 23 23 Si 1.86803 * 119.99762 * 163.67947 * 21 19 18 24 24 H 1.48501 * 109.47131 * 90.00337 * 23 21 19 25 25 H 1.48497 * 109.47187 * 210.00251 * 23 21 19 26 26 H 1.48500 * 109.47368 * 330.00189 * 23 21 19 27 27 H 1.08993 * 109.47433 * 269.99563 * 1 2 3 28 28 H 1.08994 * 109.47794 * 30.00569 * 1 2 3 29 29 H 1.09007 * 109.46951 * 149.99894 * 1 2 3 30 30 H 1.09001 * 109.47282 * 29.99942 * 3 2 1 31 31 H 1.09003 * 109.47143 * 149.99884 * 3 2 1 32 32 H 1.08998 * 117.49522 * 359.97438 * 6 4 3 33 33 H 1.09008 * 117.49652 * 145.01602 * 6 4 3 34 34 H 1.09000 * 109.47178 * 59.99743 * 8 7 4 35 35 H 1.09001 * 109.47387 * 180.02562 * 8 7 4 36 36 H 1.09001 * 109.47146 * 300.00099 * 8 7 4 37 37 H 1.08991 * 109.47572 * 59.99757 * 9 7 4 38 38 H 1.09002 * 109.47127 * 180.02562 * 9 7 4 39 39 H 1.09003 * 109.46794 * 299.99531 * 9 7 4 40 40 H 1.09005 * 109.47213 * 60.00107 * 12 10 2 41 41 H 1.08996 * 109.47406 * 300.00264 * 12 10 2 42 42 H 1.07999 * 119.87708 * 0.25526 * 14 13 12 43 43 H 1.07999 * 119.75142 * 179.97438 * 15 14 13 44 44 H 1.07995 * 119.87471 * 179.97438 * 16 15 14 45 45 H 1.07994 * 120.12565 * 179.97438 * 17 16 15 46 46 H 0.97005 * 120.00046 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 1 1.7095 1.3870 -2.1715 6 6 3.9073 1.7990 -1.9074 7 6 3.1049 3.0775 -1.6579 8 6 2.6651 3.8856 -2.8803 9 6 3.4519 3.8985 -0.4142 10 6 2.1390 -1.1671 0.0005 11 8 3.3518 -1.1670 0.0010 12 6 1.3855 -2.4722 0.0005 13 6 2.3649 -3.6176 0.0005 14 6 2.7351 -4.2101 -1.1853 15 6 3.6361 -5.2634 -1.1882 16 6 4.1741 -5.7327 0.0005 17 6 3.8183 -5.1555 1.1979 18 6 2.9048 -4.0851 1.2128 19 6 2.5327 -3.4835 2.4371 20 1 2.1981 -2.4567 2.4546 21 6 2.5977 -4.2186 3.6262 22 7 2.6878 -5.5230 3.5847 23 14 2.5561 -3.3370 5.2726 24 1 1.1485 -3.2003 5.7255 25 1 3.3241 -4.1207 6.2732 26 1 3.1627 -1.9893 5.1280 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8898 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6082 2.0285 0.5138 31 1 3.1498 1.1386 0.5139 32 1 4.6828 1.5429 -1.1856 33 1 4.1219 1.5334 -2.9427 34 1 1.5950 4.0837 -2.8191 35 1 3.2089 4.8299 -2.9065 36 1 2.8784 3.3186 -3.7865 37 1 4.1522 3.3397 0.2064 38 1 3.9066 4.8418 -0.7168 39 1 2.5434 4.0993 0.1537 40 1 0.7592 -2.5302 -0.8897 41 1 0.7585 -2.5298 0.8902 42 1 2.3255 -3.8500 -2.1175 43 1 3.9207 -5.7227 -2.1234 44 1 4.8750 -6.5542 -0.0135 45 1 4.2382 -5.5228 2.1226 46 1 2.7332 -6.0325 4.4090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856460760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:56:59 Heat of formation + Delta-G solvation = -18.564955 kcal Electronic energy + Delta-G solvation = -24727.018194 eV Core-core repulsion = 21387.975629 eV Total energy + Delta-G solvation = -3339.042565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.03925 -39.63660 -38.89260 -36.21660 -35.50086 -33.47925 -31.36745 -30.85719 -29.13250 -28.46189 -27.88300 -27.10725 -26.13123 -22.84079 -22.49640 -21.57249 -20.01926 -19.58895 -19.04125 -17.90180 -17.37039 -16.95299 -16.58266 -16.24120 -15.70051 -15.53756 -15.19767 -14.92038 -14.71350 -14.38486 -14.23332 -13.90076 -13.71324 -13.51502 -13.36958 -13.29938 -13.15450 -13.01284 -12.87417 -12.77712 -12.71999 -12.66757 -12.48844 -12.38394 -12.13681 -11.99290 -11.32202 -11.20835 -11.02197 -10.77541 -10.72148 -10.46412 -9.51904 -9.22738 -9.15429 -8.59652 -6.29304 0.99623 1.13199 1.34527 1.45964 1.52926 1.86270 2.17906 2.19698 2.77125 2.80900 3.68411 3.70661 3.81960 3.92617 4.08586 4.18789 4.32164 4.34675 4.39551 4.46839 4.56479 4.58934 4.63639 4.70725 4.78454 4.78941 4.80698 4.90526 4.92318 4.97084 5.05289 5.06137 5.08117 5.09156 5.19616 5.24023 5.28630 5.36517 5.48827 5.54824 5.73800 5.77558 6.03685 6.16460 6.21090 6.42253 6.51963 6.73794 6.99515 7.11299 7.43418 8.37029 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.004356 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.726346 B = 6426.698789 C = 7473.236328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.622 5.622 3 C 0.148 3.852 4 C -0.160 4.160 5 H 0.106 0.894 6 C -0.184 4.184 7 C -0.105 4.105 8 C -0.111 4.111 9 C -0.118 4.118 10 C 0.514 3.486 11 O -0.572 6.572 12 C -0.065 4.065 13 C -0.187 4.187 14 C -0.092 4.092 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.097 3.903 19 C -0.483 4.483 20 H 0.068 0.932 21 C 0.037 3.963 22 N -0.826 5.826 23 Si 0.970 3.030 24 H -0.253 1.253 25 H -0.267 1.267 26 H -0.270 1.270 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 16.596 -6.865 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.356 5.356 3 C 0.026 3.974 4 C -0.179 4.179 5 H 0.124 0.876 6 C -0.221 4.221 7 C -0.106 4.106 8 C -0.168 4.168 9 C -0.175 4.175 10 C 0.304 3.696 11 O -0.450 6.450 12 C -0.104 4.104 13 C -0.188 4.188 14 C -0.110 4.110 15 C -0.261 4.261 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.095 3.905 19 C -0.513 4.513 20 H 0.086 0.914 21 C -0.177 4.177 22 N -0.453 5.453 23 Si 0.791 3.209 24 H -0.177 1.177 25 H -0.192 1.192 26 H -0.194 1.194 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.195 16.384 -6.700 18.753 hybrid contribution 0.493 -0.411 0.844 1.060 sum -5.702 15.972 -5.856 17.942 Atomic orbital electron populations 1.22042 0.77214 1.04753 1.02907 1.47995 1.08349 1.05035 1.74176 1.20959 0.96908 0.84684 0.94866 1.22818 0.96299 1.01016 0.97765 0.87608 1.23219 0.94571 1.02814 1.01530 1.21731 1.01852 0.88287 0.98720 1.21367 1.01907 0.99356 0.94200 1.21400 1.01680 0.99432 0.95030 1.21155 0.87777 0.86166 0.74533 1.90643 1.16330 1.87799 1.50192 1.20280 0.97040 0.89076 1.04054 1.19573 1.04205 1.01643 0.93415 1.20709 0.97707 0.96233 0.96377 1.20707 1.05660 1.02851 0.96905 1.20944 0.99908 0.99405 0.93338 1.21300 1.01765 1.01701 0.96584 1.17718 0.88957 0.91009 0.92854 1.19587 1.41009 0.98693 0.91962 0.91367 1.26651 0.91621 0.95087 1.04363 1.69880 1.36468 1.07641 1.31298 0.85389 0.79810 0.78920 0.76750 1.17720 1.19166 1.19409 0.91940 0.88496 0.90094 0.87897 0.93160 0.91003 0.89275 0.91054 0.90904 0.92809 0.93748 0.90656 0.90907 0.87394 0.88771 0.86823 0.86724 0.87666 0.88541 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 10.24 127.77 1.31 2.74 16 2 N -0.62 -18.51 2.87 -846.77 -2.43 -20.94 16 3 C 0.15 3.99 4.77 86.38 0.41 4.41 16 4 C -0.16 -3.85 5.73 -10.80 -0.06 -3.91 16 5 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 6 C -0.18 -4.89 9.47 30.59 0.29 -4.60 16 7 C -0.11 -2.06 2.70 -52.18 -0.14 -2.20 16 8 C -0.11 -1.64 9.85 71.98 0.71 -0.94 16 9 C -0.12 -2.05 8.86 71.98 0.64 -1.41 16 10 C 0.51 20.76 7.30 87.66 0.64 21.40 16 11 O -0.57 -28.91 15.61 -3.02 -0.05 -28.96 16 12 C -0.07 -2.59 3.73 29.10 0.11 -2.48 16 13 C -0.19 -9.26 4.43 -19.41 -0.09 -9.35 16 14 C -0.09 -4.29 9.66 22.22 0.21 -4.07 16 15 C -0.24 -11.36 10.05 22.46 0.23 -11.14 16 16 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 17 C -0.19 -11.02 8.69 22.73 0.20 -10.82 16 18 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16 19 C -0.48 -26.76 8.14 23.46 0.19 -26.57 16 20 H 0.07 3.71 6.68 -2.91 -0.02 3.69 16 21 C 0.04 1.94 5.16 85.26 0.44 2.38 16 22 N -0.83 -44.58 10.97 21.83 0.24 -44.34 16 23 Si 0.97 39.81 29.59 68.60 2.03 41.84 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 29 H 0.08 1.49 6.44 -2.38 -0.02 1.47 16 30 H 0.10 2.11 7.70 -2.39 -0.02 2.09 16 31 H 0.05 1.70 7.15 -2.39 -0.02 1.68 16 32 H 0.07 2.25 7.94 -2.39 -0.02 2.23 16 33 H 0.09 2.29 8.05 -2.38 -0.02 2.28 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.90 7.92 -2.39 -0.02 0.88 16 36 H 0.05 0.83 7.90 -2.39 -0.02 0.81 16 37 H 0.04 0.91 7.90 -2.39 -0.02 0.89 16 38 H 0.07 1.06 7.92 -2.39 -0.02 1.04 16 39 H 0.07 1.07 7.83 -2.39 -0.02 1.05 16 40 H 0.11 3.45 7.31 -2.38 -0.02 3.43 16 41 H 0.09 3.73 7.03 -2.39 -0.02 3.72 16 42 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 44 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.10 5.71 6.22 -2.91 -0.02 5.70 16 46 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 Total: -1.00 -70.88 373.69 5.93 -64.95 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.95 Total: 34.40 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 5.19 Total: -46.96 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -2.19 Total: -65.28 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -70.88 5.93 -64.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856460760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.383 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds