Wall clock time and date at job start Fri Apr 10 2020 20:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99911 * 2 1 4 4 C 1.53005 * 109.46757 * 269.99972 * 3 2 1 5 5 H 1.08996 * 115.55362 * 330.58293 * 4 3 2 6 6 C 1.52998 * 117.49482 * 116.25772 * 4 3 2 7 7 C 1.53007 * 117.49153 * 184.91047 * 4 3 2 8 8 C 1.52995 * 117.50328 * 0.02562 * 7 4 3 9 9 C 1.53009 * 117.49070 * 145.02308 * 7 4 3 10 10 C 1.34774 * 120.00358 * 179.97438 * 2 1 3 11 11 O 1.21274 * 120.00456 * 179.97438 * 10 2 1 12 12 C 1.50708 * 119.99786 * 0.02562 * 10 2 1 13 13 C 1.50700 * 109.46811 * 179.97438 * 12 10 2 14 14 C 1.37639 * 120.12083 * 264.72071 * 13 12 10 15 15 C 1.38617 * 120.24192 * 179.72743 * 14 13 12 16 16 C 1.38660 * 120.50256 * 0.55212 * 15 14 13 17 17 C 1.37595 * 120.24859 * 359.72822 * 16 15 14 18 18 C 1.40689 * 120.12992 * 84.99987 * 13 12 10 19 19 C 1.41397 * 120.24515 * 359.97432 * 18 13 12 20 20 H 1.08002 * 120.00318 * 334.06861 * 19 18 13 21 21 C 1.39943 * 120.00283 * 154.06504 * 19 18 13 22 22 N 1.30837 * 119.99875 * 343.64691 * 21 19 18 23 23 Si 1.86797 * 120.00261 * 163.64638 * 21 19 18 24 24 H 1.48495 * 109.47196 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47143 * 120.00443 * 23 21 19 26 26 H 1.48500 * 109.47113 * 239.99839 * 23 21 19 27 27 H 1.09005 * 109.47174 * 89.99848 * 1 2 3 28 28 H 1.09004 * 109.46931 * 209.99991 * 1 2 3 29 29 H 1.08995 * 109.47363 * 330.00260 * 1 2 3 30 30 H 1.08999 * 109.47234 * 150.00388 * 3 2 1 31 31 H 1.09001 * 109.46951 * 29.99516 * 3 2 1 32 32 H 1.09006 * 117.49237 * 214.97706 * 6 4 3 33 33 H 1.09001 * 117.50364 * 359.96579 * 6 4 3 34 34 H 1.08998 * 109.46915 * 59.99622 * 8 7 4 35 35 H 1.08999 * 109.47041 * 180.02562 * 8 7 4 36 36 H 1.09001 * 109.46642 * 299.99736 * 8 7 4 37 37 H 1.08991 * 109.47056 * 60.00274 * 9 7 4 38 38 H 1.09004 * 109.46318 * 179.97438 * 9 7 4 39 39 H 1.09003 * 109.46763 * 299.99701 * 9 7 4 40 40 H 1.09001 * 109.46387 * 299.99739 * 12 10 2 41 41 H 1.08991 * 109.47091 * 59.99485 * 12 10 2 42 42 H 1.07991 * 119.88382 * 359.97438 * 14 13 12 43 43 H 1.07996 * 119.74968 * 180.25324 * 15 14 13 44 44 H 1.08002 * 119.87679 * 179.74869 * 16 15 14 45 45 H 1.08001 * 120.13159 * 179.97438 * 17 16 15 46 46 H 0.96999 * 119.99871 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 1 2.5453 0.9052 -2.1713 6 6 1.7991 3.0131 -1.9084 7 6 3.3082 2.9603 -1.6578 8 6 3.8440 3.6725 -0.4142 9 6 4.2285 2.9844 -2.8800 10 6 2.1389 -1.1671 0.0005 11 8 3.3517 -1.1672 0.0001 12 6 1.3854 -2.4723 0.0005 13 6 2.3648 -3.6177 0.0005 14 6 2.7304 -4.2138 -1.1850 15 6 3.6354 -5.2638 -1.1884 16 6 4.1735 -5.7331 0.0002 17 6 3.8179 -5.1560 1.1976 18 6 2.9043 -4.0855 1.2127 19 6 2.5319 -3.4843 2.4371 20 1 2.1969 -2.4577 2.4548 21 6 2.5974 -4.2194 3.6261 22 7 2.6874 -5.5240 3.5844 23 14 2.5563 -3.3382 5.2726 24 1 2.4514 -1.8741 5.0479 25 1 1.3827 -3.8039 6.0542 26 1 3.8017 -3.6361 6.0247 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.1499 1.1385 0.5138 31 1 1.6083 2.0284 0.5138 32 1 1.4624 3.0649 -2.9439 33 1 1.1872 3.5552 -1.1875 34 1 4.4727 2.9873 0.1543 35 1 4.4315 4.5394 -0.7168 36 1 3.0088 3.9986 0.2057 37 1 3.6314 2.8845 -3.7863 38 1 4.7729 3.9284 -2.9062 39 1 4.9363 2.1578 -2.8182 40 1 0.7585 -2.5298 0.8903 41 1 0.7591 -2.5302 -0.8896 42 1 2.3138 -3.8597 -2.1162 43 1 3.9198 -5.7231 -2.1236 44 1 4.8747 -6.5544 -0.0138 45 1 4.2379 -5.5232 2.1224 46 1 2.7331 -6.0336 4.4086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856460761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:57:04 Heat of formation + Delta-G solvation = -3.725505 kcal Electronic energy + Delta-G solvation = -24700.087219 eV Core-core repulsion = 21361.688141 eV Total energy + Delta-G solvation = -3338.399078 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.66451 -38.41406 -37.22740 -34.85113 -33.57272 -31.75755 -29.87099 -29.39348 -28.07943 -27.36258 -26.75763 -25.36038 -24.54583 -21.49295 -20.87644 -19.96067 -18.80646 -18.39459 -17.10734 -16.38233 -16.04172 -15.49285 -15.15969 -14.61236 -14.31875 -14.26688 -13.81599 -13.53663 -13.44409 -12.95624 -12.69838 -12.59952 -12.49920 -12.46492 -12.20943 -12.17885 -11.94572 -11.59015 -11.53580 -11.51352 -11.20083 -11.10701 -10.95744 -10.92608 -10.62925 -10.34785 -9.86263 -9.64911 -9.43398 -9.30970 -9.12583 -9.02082 -8.28774 -7.26239 -7.23720 -6.69461 -4.29550 2.81370 3.00344 3.09781 3.15242 3.30333 3.36203 3.43956 3.74016 3.97156 4.61469 4.69535 4.70195 4.78947 5.00601 5.16087 5.35357 5.42613 5.47075 5.56096 5.58087 5.66907 5.76336 5.80625 5.81178 5.82902 5.85680 5.87718 5.96241 6.07604 6.09968 6.18222 6.19051 6.30341 6.33328 6.48458 6.55732 6.83654 6.93269 7.13339 7.34460 7.47217 7.68259 7.84538 7.98537 8.12460 8.17921 8.36567 8.69729 8.90053 8.96774 9.06595 10.24869 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.004366 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.090344 B = 6411.422644 C = 7393.067841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.629 5.629 3 C 0.149 3.851 4 C -0.151 4.151 5 H 0.104 0.896 6 C -0.174 4.174 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.516 3.484 11 O -0.517 6.517 12 C -0.069 4.069 13 C -0.180 4.180 14 C -0.082 4.082 15 C -0.239 4.239 16 C -0.108 4.108 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.902 3.098 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.272 1.272 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 14.251 -5.892 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.365 5.365 3 C 0.026 3.974 4 C -0.170 4.170 5 H 0.122 0.878 6 C -0.211 4.211 7 C -0.126 4.126 8 C -0.173 4.173 9 C -0.172 4.172 10 C 0.305 3.695 11 O -0.390 6.390 12 C -0.108 4.108 13 C -0.182 4.182 14 C -0.100 4.100 15 C -0.258 4.258 16 C -0.126 4.126 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.727 3.273 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.197 1.197 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.902 14.021 -5.715 15.636 hybrid contribution -0.169 0.321 0.680 0.771 sum -4.072 14.342 -5.034 15.736 Atomic orbital electron populations 1.21719 0.80073 1.02934 1.01278 1.47977 1.06599 1.05801 1.76125 1.20885 0.97844 0.84932 0.93747 1.22929 1.03717 0.91411 0.98968 0.87808 1.23326 0.94704 1.01204 1.01892 1.21565 0.92141 1.01096 0.97749 1.21346 1.00885 0.99613 0.95499 1.21346 0.98697 1.01909 0.95215 1.21248 0.88474 0.84974 0.74787 1.90671 1.14132 1.86956 1.47275 1.20293 0.97765 0.90208 1.02552 1.19081 1.04289 1.00868 0.93947 1.20289 0.97819 0.96491 0.95394 1.20299 1.06238 1.03095 0.96211 1.20670 0.99530 0.98905 0.93502 1.21287 1.00161 1.00027 0.96359 1.17335 0.88265 0.90365 0.91380 1.19495 1.39344 0.98797 0.90942 0.90815 1.25872 0.92440 0.94526 1.01175 1.69837 1.36065 1.06358 1.29923 0.86364 0.78553 0.80919 0.81505 1.18553 1.20052 1.19727 0.93192 0.90636 0.91820 0.89604 0.91203 0.89222 0.89025 0.91808 0.92312 0.92534 0.92702 0.92311 0.91995 0.88660 0.90785 0.89864 0.89721 0.89621 0.86570 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.29 59.85 0.62 1.58 16 2 N -0.63 -9.82 2.87 -181.56 -0.52 -10.34 16 3 C 0.15 2.08 4.81 -4.04 -0.02 2.07 16 4 C -0.15 -1.93 5.73 -90.61 -0.52 -2.45 16 5 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 6 C -0.17 -1.76 9.47 -26.70 -0.25 -2.01 16 7 C -0.12 -1.38 2.70 -154.47 -0.42 -1.79 16 8 C -0.12 -1.17 8.86 37.16 0.33 -0.84 16 9 C -0.11 -1.18 9.85 37.16 0.37 -0.81 16 10 C 0.52 10.42 7.31 -10.98 -0.08 10.34 16 11 O -0.52 -12.68 15.61 5.56 0.09 -12.59 16 12 C -0.07 -1.38 3.74 -29.03 -0.11 -1.49 16 13 C -0.18 -4.42 4.43 -103.92 -0.46 -4.88 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 17 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 18 C 0.13 3.50 5.56 -106.83 -0.59 2.91 16 19 C -0.46 -12.17 8.14 -37.74 -0.31 -12.48 16 20 H 0.07 1.93 6.68 -52.49 -0.35 1.58 16 21 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 22 N -0.80 -20.76 10.97 55.55 0.61 -20.15 16 23 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 29 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 30 H 0.09 1.41 7.05 -51.93 -0.37 1.04 16 31 H 0.07 0.80 7.63 -51.93 -0.40 0.41 16 32 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.09 0.83 7.94 -51.93 -0.41 0.41 16 34 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 35 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 36 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 37 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 38 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.89 6.32 -51.93 -0.33 1.56 16 41 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 42 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 45 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 46 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -30.89 373.44 -9.76 -40.65 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.48 Total: 6.90 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -3.05 Total: -24.13 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.09 Total: -30.49 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.89 -9.76 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856460761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.925 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds