Wall clock time and date at job start Fri Apr 10 2020 20:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46753 * 2 1 4 4 N 1.46498 * 109.47040 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99826 * 269.99698 * 4 3 2 6 6 H 1.08004 * 119.99658 * 145.32367 * 5 4 3 7 7 C 1.38951 * 119.99994 * 325.32966 * 5 4 3 8 8 N 1.31403 * 120.00152 * 337.23977 * 7 5 4 9 9 Si 1.86803 * 119.99727 * 157.23992 * 7 5 4 10 10 H 1.48500 * 109.47265 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46986 * 120.00024 * 9 7 5 12 12 H 1.48503 * 109.47062 * 239.99908 * 9 7 5 13 13 C 1.34770 * 120.00080 * 90.00018 * 4 3 2 14 14 O 1.21294 * 120.00156 * 4.88657 * 13 4 3 15 15 C 1.50704 * 119.99942 * 184.88311 * 13 4 3 16 16 C 1.50700 * 109.46933 * 177.76994 * 15 13 4 17 17 C 1.38269 * 120.11070 * 269.72206 * 16 15 13 18 18 C 1.37934 * 119.77201 * 179.91214 * 17 16 15 19 19 C 1.38919 * 120.53746 * 0.52112 * 18 17 16 20 20 C 1.37655 * 119.68813 * 359.44991 * 19 18 17 21 21 C 1.37935 * 120.11496 * 90.00583 * 16 15 13 22 22 C 1.50633 * 122.55930 * 180.80280 * 20 19 18 23 23 C 1.52726 * 110.59180 * 341.99789 * 22 20 19 24 24 C 1.53320 * 108.41296 * 51.10436 * 23 22 20 25 25 C 1.50630 * 117.75278 * 179.13227 * 19 18 17 26 26 H 1.08994 * 109.46875 * 60.00326 * 1 2 3 27 27 H 1.09005 * 109.46156 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47212 * 299.99460 * 1 2 3 29 29 H 1.08995 * 109.47212 * 240.00540 * 2 1 3 30 30 H 1.09001 * 109.47222 * 119.99579 * 2 1 3 31 31 H 1.09001 * 109.47101 * 59.99648 * 3 2 1 32 32 H 1.09004 * 109.47366 * 300.00005 * 3 2 1 33 33 H 0.97001 * 119.99697 * 184.95718 * 8 7 5 34 34 H 1.08999 * 109.47323 * 57.76745 * 15 13 4 35 35 H 1.09003 * 109.47366 * 297.76886 * 15 13 4 36 36 H 1.08000 * 120.11825 * 0.16414 * 17 16 15 37 37 H 1.08000 * 119.73185 * 180.24681 * 18 17 16 38 38 H 1.07995 * 119.72697 * 359.97438 * 21 16 15 39 39 H 1.09001 * 109.24880 * 102.28437 * 22 20 19 40 40 H 1.08996 * 109.24980 * 221.71044 * 22 20 19 41 41 H 1.08995 * 109.67803 * 291.36866 * 23 22 20 42 42 H 1.09004 * 109.70040 * 170.85456 * 23 22 20 43 43 H 1.09002 * 109.67713 * 170.46934 * 24 23 22 44 44 H 1.09003 * 109.67903 * 49.91901 * 24 23 22 45 45 H 1.08996 * 109.25801 * 282.51061 * 25 19 18 46 46 H 1.09005 * 109.25490 * 41.94685 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.4426 1.1864 6 1 5.1272 0.9104 1.2690 7 6 3.6816 2.1270 2.2832 8 7 2.8293 3.1112 2.1057 9 14 4.2086 1.6479 4.0101 10 1 5.1684 0.5169 3.9390 11 1 4.8589 2.8089 4.6692 12 1 3.0170 1.2365 4.7951 13 6 4.1783 1.4429 -1.1680 14 8 3.5748 1.5325 -2.2163 15 6 5.6813 1.3318 -1.1710 16 6 6.1798 1.3004 -2.5928 17 6 6.3266 0.0927 -3.2499 18 6 6.7817 0.0721 -4.5518 19 6 7.1043 1.2547 -5.2055 20 6 6.9576 2.4571 -4.5516 21 6 6.4967 2.4759 -3.2412 22 6 7.2710 3.7782 -5.2039 23 6 8.1521 3.5740 -6.4346 24 6 7.5016 2.5082 -7.3243 25 6 7.6142 1.1579 -6.6196 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.5291 3.6356 2.8645 34 1 5.9790 0.4155 -0.6612 35 1 6.1101 2.1906 -0.6546 36 1 6.0819 -0.8312 -2.7468 37 1 6.8923 -0.8713 -5.0657 38 1 6.3858 3.4184 -2.7259 39 1 6.3407 4.2605 -5.5039 40 1 7.7923 4.4165 -4.4906 41 1 9.1424 3.2396 -6.1256 42 1 8.2364 4.5107 -6.9856 43 1 8.0179 2.4658 -8.2834 44 1 6.4514 2.7533 -7.4827 45 1 8.6585 0.8462 -6.6046 46 1 7.0267 0.4184 -7.1637 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072014667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:57:02 Heat of formation + Delta-G solvation = -40.846362 kcal Electronic energy + Delta-G solvation = -24512.809201 eV Core-core repulsion = 21172.800442 eV Total energy + Delta-G solvation = -3340.008759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84830 -38.48673 -36.14057 -34.94328 -32.85220 -32.43049 -31.45286 -30.97382 -28.95210 -27.11411 -25.58012 -24.30826 -23.25456 -22.09822 -21.71077 -20.63686 -19.19071 -18.73817 -16.81519 -15.99908 -15.81338 -15.37866 -15.04034 -14.60709 -14.26535 -14.16897 -13.84413 -13.82776 -13.80550 -13.37877 -12.95664 -12.70438 -12.52291 -12.35778 -12.17945 -11.76483 -11.53753 -11.42778 -11.26868 -11.20670 -11.05503 -10.94706 -10.90199 -10.78548 -10.59665 -10.33177 -10.28938 -10.26138 -10.09443 -9.71281 -9.13096 -8.47002 -8.27270 -7.92954 -7.46753 -6.37947 -4.03716 1.78120 1.82082 3.08231 3.20259 3.23507 3.92746 4.06377 4.14763 4.73060 4.77963 4.86404 4.88671 5.02934 5.20905 5.24317 5.37455 5.43079 5.57228 5.59361 5.64038 5.76202 5.80121 5.83530 5.86635 5.95210 6.00318 6.03330 6.07259 6.07761 6.18824 6.29334 6.33757 6.38153 6.51156 6.53380 6.55456 6.65633 6.71458 6.83451 6.86294 6.99101 7.15067 7.17446 7.36678 7.46056 7.54522 7.96430 8.38628 9.08077 9.55521 9.99060 10.63492 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.003605 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.009264 B = 7764.354054 C = 8371.858234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.111 3.889 4 N -0.441 5.441 5 C -0.342 4.342 6 H 0.090 0.910 7 C 0.045 3.955 8 N -0.858 5.858 9 Si 0.912 3.088 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.473 3.527 14 O -0.599 6.599 15 C -0.087 4.087 16 C -0.042 4.042 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.093 4.093 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.079 4.079 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.075 4.075 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -2.299 -10.228 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.013 4.013 4 N -0.159 5.159 5 C -0.470 4.470 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.495 5.495 9 Si 0.738 3.262 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.262 3.738 14 O -0.484 6.484 15 C -0.127 4.127 16 C -0.043 4.043 17 C -0.129 4.129 18 C -0.140 4.140 19 C -0.093 4.093 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.112 4.112 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.277 -2.150 -10.589 13.028 hybrid contribution 0.107 -0.238 1.208 1.236 sum 7.384 -2.388 -9.381 12.175 Atomic orbital electron populations 1.21658 0.96639 1.00390 1.01398 1.21821 0.94648 0.99532 1.01113 1.21467 0.81564 0.94555 1.03687 1.43466 1.04696 1.63315 1.04452 1.19459 1.07633 1.32559 0.87366 0.89203 1.25320 0.96579 0.94070 1.00151 1.69867 1.32006 1.15814 1.31805 0.86121 0.78681 0.78887 0.82495 1.19146 1.20728 1.20503 1.20206 0.88630 0.80786 0.84168 1.90545 1.70223 1.55625 1.32038 1.20470 0.95271 1.04187 0.92758 1.19511 0.95970 0.93057 0.95728 1.20874 0.99730 0.97524 0.94755 1.20975 1.00939 0.97162 0.94936 1.19411 1.01636 0.92615 0.95652 1.19444 1.00214 0.94105 0.93998 1.20972 0.99416 0.97868 0.94215 1.20437 0.99982 0.94428 0.96786 1.21525 0.99018 0.98780 0.96169 1.21540 1.01294 0.94935 0.97943 1.20389 1.00712 0.97716 0.92376 0.93176 0.93668 0.92961 0.93252 0.92311 0.87511 0.92851 0.91998 0.89546 0.88723 0.86621 0.86848 0.86542 0.90852 0.91025 0.91809 0.91813 0.91884 0.91634 0.91250 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.13 -2.77 6.26 -26.73 -0.17 -2.94 16 3 C 0.11 2.70 5.04 -4.04 -0.02 2.68 16 4 N -0.44 -11.16 2.54 -114.81 -0.29 -11.45 16 5 C -0.34 -8.57 8.72 -14.93 -0.13 -8.70 16 6 H 0.09 2.13 6.95 -52.48 -0.36 1.77 16 7 C 0.04 1.12 4.95 -17.47 -0.09 1.03 16 8 N -0.86 -22.51 11.34 55.50 0.63 -21.88 16 9 Si 0.91 19.15 29.61 -169.99 -5.03 14.12 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 13 C 0.47 11.68 7.62 -10.99 -0.08 11.59 16 14 O -0.60 -16.25 15.59 5.54 0.09 -16.16 16 15 C -0.09 -1.77 4.46 -29.03 -0.13 -1.90 16 16 C -0.04 -0.80 4.37 -104.72 -0.46 -1.26 16 17 C -0.11 -1.92 9.71 -39.68 -0.39 -2.31 16 18 C -0.12 -1.87 9.61 -39.44 -0.38 -2.25 16 19 C -0.09 -1.38 5.74 -104.62 -0.60 -1.98 16 20 C -0.08 -1.22 5.74 -104.62 -0.60 -1.82 16 21 C -0.11 -1.91 9.27 -39.44 -0.37 -2.28 16 22 C -0.08 -1.00 5.67 -28.06 -0.16 -1.16 16 23 C -0.12 -1.20 5.98 -26.71 -0.16 -1.36 16 24 C -0.12 -1.22 5.98 -26.71 -0.16 -1.38 16 25 C -0.07 -0.85 5.67 -28.06 -0.16 -1.01 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.11 2.75 5.36 -51.93 -0.28 2.47 16 32 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 33 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 34 H 0.09 1.63 7.63 -51.93 -0.40 1.23 16 35 H 0.09 1.89 8.04 -51.93 -0.42 1.47 16 36 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.11 1.44 8.05 -52.49 -0.42 1.02 16 38 H 0.12 2.03 8.05 -52.49 -0.42 1.61 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 41 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -29.45 368.65 -10.46 -39.91 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.73 Total: 7.05 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.67 Total: -17.14 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.34 Total: -33.33 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.16 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.45 -10.46 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072014667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.934 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds