Wall clock time and date at job start Fri Apr 10 2020 20:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46753 * 2 1 4 4 N 1.46498 * 109.47040 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99826 * 269.99698 * 4 3 2 6 6 H 1.08004 * 119.99658 * 145.32367 * 5 4 3 7 7 C 1.38951 * 119.99994 * 325.32966 * 5 4 3 8 8 N 1.31403 * 120.00152 * 337.23977 * 7 5 4 9 9 Si 1.86803 * 119.99727 * 157.23992 * 7 5 4 10 10 H 1.48500 * 109.47265 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46986 * 120.00024 * 9 7 5 12 12 H 1.48503 * 109.47062 * 239.99908 * 9 7 5 13 13 C 1.34770 * 120.00080 * 90.00018 * 4 3 2 14 14 O 1.21294 * 120.00156 * 4.88657 * 13 4 3 15 15 C 1.50704 * 119.99942 * 184.88311 * 13 4 3 16 16 C 1.50700 * 109.46933 * 177.76994 * 15 13 4 17 17 C 1.38269 * 120.11070 * 269.72206 * 16 15 13 18 18 C 1.37934 * 119.77201 * 179.91214 * 17 16 15 19 19 C 1.38919 * 120.53746 * 0.52112 * 18 17 16 20 20 C 1.37655 * 119.68813 * 359.44991 * 19 18 17 21 21 C 1.37935 * 120.11496 * 90.00583 * 16 15 13 22 22 C 1.50633 * 122.55930 * 180.80280 * 20 19 18 23 23 C 1.52726 * 110.59180 * 341.99789 * 22 20 19 24 24 C 1.53320 * 108.41296 * 51.10436 * 23 22 20 25 25 C 1.50630 * 117.75278 * 179.13227 * 19 18 17 26 26 H 1.08994 * 109.46875 * 60.00326 * 1 2 3 27 27 H 1.09005 * 109.46156 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47212 * 299.99460 * 1 2 3 29 29 H 1.08995 * 109.47212 * 240.00540 * 2 1 3 30 30 H 1.09001 * 109.47222 * 119.99579 * 2 1 3 31 31 H 1.09001 * 109.47101 * 59.99648 * 3 2 1 32 32 H 1.09004 * 109.47366 * 300.00005 * 3 2 1 33 33 H 0.97001 * 119.99697 * 184.95718 * 8 7 5 34 34 H 1.08999 * 109.47323 * 57.76745 * 15 13 4 35 35 H 1.09003 * 109.47366 * 297.76886 * 15 13 4 36 36 H 1.08000 * 120.11825 * 0.16414 * 17 16 15 37 37 H 1.08000 * 119.73185 * 180.24681 * 18 17 16 38 38 H 1.07995 * 119.72697 * 359.97438 * 21 16 15 39 39 H 1.09001 * 109.24880 * 102.28437 * 22 20 19 40 40 H 1.08996 * 109.24980 * 221.71044 * 22 20 19 41 41 H 1.08995 * 109.67803 * 291.36866 * 23 22 20 42 42 H 1.09004 * 109.70040 * 170.85456 * 23 22 20 43 43 H 1.09002 * 109.67713 * 170.46934 * 24 23 22 44 44 H 1.09003 * 109.67903 * 49.91901 * 24 23 22 45 45 H 1.08996 * 109.25801 * 282.51061 * 25 19 18 46 46 H 1.09005 * 109.25490 * 41.94685 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.4426 1.1864 6 1 5.1272 0.9104 1.2690 7 6 3.6816 2.1270 2.2832 8 7 2.8293 3.1112 2.1057 9 14 4.2086 1.6479 4.0101 10 1 5.1684 0.5169 3.9390 11 1 4.8589 2.8089 4.6692 12 1 3.0170 1.2365 4.7951 13 6 4.1783 1.4429 -1.1680 14 8 3.5748 1.5325 -2.2163 15 6 5.6813 1.3318 -1.1710 16 6 6.1798 1.3004 -2.5928 17 6 6.3266 0.0927 -3.2499 18 6 6.7817 0.0721 -4.5518 19 6 7.1043 1.2547 -5.2055 20 6 6.9576 2.4571 -4.5516 21 6 6.4967 2.4759 -3.2412 22 6 7.2710 3.7782 -5.2039 23 6 8.1521 3.5740 -6.4346 24 6 7.5016 2.5082 -7.3243 25 6 7.6142 1.1579 -6.6196 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.5291 3.6356 2.8645 34 1 5.9790 0.4155 -0.6612 35 1 6.1101 2.1906 -0.6546 36 1 6.0819 -0.8312 -2.7468 37 1 6.8923 -0.8713 -5.0657 38 1 6.3858 3.4184 -2.7259 39 1 6.3407 4.2605 -5.5039 40 1 7.7923 4.4165 -4.4906 41 1 9.1424 3.2396 -6.1256 42 1 8.2364 4.5107 -6.9856 43 1 8.0179 2.4658 -8.2834 44 1 6.4514 2.7533 -7.4827 45 1 8.6585 0.8462 -6.6046 46 1 7.0267 0.4184 -7.1637 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072014667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:57:01 Heat of formation + Delta-G solvation = -53.422563 kcal Electronic energy + Delta-G solvation = -24513.354546 eV Core-core repulsion = 21172.800442 eV Total energy + Delta-G solvation = -3340.554104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15122 -40.25351 -37.43585 -36.70110 -34.58634 -33.66225 -33.23084 -32.34885 -30.09245 -28.55366 -27.38090 -26.04194 -24.31469 -23.23633 -22.99124 -22.25197 -21.01204 -19.95776 -18.64104 -17.85286 -17.05575 -16.81715 -16.44507 -16.20629 -15.84062 -15.60051 -15.49769 -15.26162 -14.70326 -14.58289 -14.49616 -14.16309 -13.96750 -13.52304 -13.47553 -13.26710 -13.16627 -13.01445 -12.75526 -12.68569 -12.58253 -12.40052 -12.21431 -12.08967 -12.00905 -11.99016 -11.71810 -11.54358 -11.27592 -11.13956 -11.04685 -10.38704 -9.55947 -9.46821 -9.22497 -8.30356 -6.03310 0.48989 0.53430 1.39947 1.48376 1.60535 2.02512 2.31550 2.74392 3.01330 3.20808 3.73851 3.80196 4.00588 4.07378 4.10429 4.13957 4.21461 4.28729 4.30168 4.42924 4.51063 4.54382 4.58580 4.64046 4.69226 4.73426 4.81010 4.83512 4.94078 4.98668 5.03379 5.06429 5.08308 5.15940 5.18400 5.19441 5.25234 5.34354 5.39410 5.45857 5.48555 5.57444 5.62720 5.78606 5.81872 6.02821 6.21650 6.43291 7.12347 7.60168 8.04243 8.72458 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.003605 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.009264 B = 7764.354054 C = 8371.858234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.111 3.889 4 N -0.452 5.452 5 C -0.359 4.359 6 H 0.101 0.899 7 C 0.005 3.995 8 N -0.893 5.893 9 Si 0.983 3.017 10 H -0.256 1.256 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.460 3.540 14 O -0.632 6.632 15 C -0.074 4.074 16 C -0.070 4.070 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.094 4.094 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.082 4.082 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.075 4.075 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.273 0.727 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.143 0.857 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.125 -3.424 -11.079 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C -0.013 4.013 4 N -0.170 5.170 5 C -0.486 4.486 6 H 0.118 0.882 7 C -0.198 4.198 8 N -0.530 5.530 9 Si 0.806 3.194 10 H -0.179 1.179 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.250 3.750 14 O -0.520 6.520 15 C -0.114 4.114 16 C -0.070 4.070 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.094 4.094 20 C -0.085 4.085 21 C -0.147 4.147 22 C -0.119 4.119 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.112 4.112 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.657 -3.280 -11.438 14.715 hybrid contribution -0.334 0.163 1.408 1.456 sum 8.323 -3.116 -10.030 13.401 Atomic orbital electron populations 1.21614 0.93676 1.02407 1.01663 1.21707 0.97209 0.96743 1.00428 1.21443 0.81666 0.96516 1.01650 1.43760 1.05151 1.63080 1.04986 1.19816 1.08292 1.33040 0.87474 0.88173 1.26184 0.96432 0.93472 1.03757 1.69976 1.33196 1.16798 1.33063 0.85044 0.78383 0.78732 0.77244 1.17930 1.20493 1.20368 1.20945 0.90422 0.80074 0.83540 1.90497 1.71333 1.57085 1.33049 1.20338 0.92079 1.04475 0.94475 1.19509 0.97935 0.94315 0.95265 1.21050 1.00459 0.97075 0.95930 1.21357 0.99742 0.98830 0.94169 1.19930 1.00099 0.91911 0.97432 1.19822 0.99383 0.96097 0.93187 1.21098 1.00735 0.97237 0.95649 1.20516 1.00480 0.92825 0.98060 1.21531 0.98497 0.99980 0.95016 1.21569 1.01040 0.94056 0.98991 1.20497 1.01781 0.98918 0.89964 0.93067 0.90734 0.92576 0.94306 0.92405 0.88877 0.95268 0.91731 0.88324 0.89084 0.86129 0.83899 0.87530 0.91337 0.90584 0.91217 0.89839 0.89164 0.92723 0.89312 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.12 -5.17 6.26 30.60 0.19 -4.98 16 3 C 0.11 5.61 5.04 86.38 0.44 6.04 16 4 N -0.45 -23.68 2.54 -635.52 -1.61 -25.29 16 5 C -0.36 -18.24 8.72 84.04 0.73 -17.51 16 6 H 0.10 4.77 6.95 -2.91 -0.02 4.75 16 7 C 0.00 0.23 4.95 84.93 0.42 0.65 16 8 N -0.89 -47.76 11.34 21.66 0.25 -47.52 16 9 Si 0.98 39.03 29.61 68.60 2.03 41.06 16 10 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 11 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 13 C 0.46 23.68 7.62 87.66 0.67 24.35 16 14 O -0.63 -35.94 15.59 -3.07 -0.05 -35.98 16 15 C -0.07 -3.14 4.46 29.10 0.13 -3.01 16 16 C -0.07 -2.74 4.37 -19.93 -0.09 -2.83 16 17 C -0.13 -4.44 9.71 22.21 0.22 -4.23 16 18 C -0.12 -3.62 9.61 22.36 0.21 -3.41 16 19 C -0.09 -2.63 5.74 -19.86 -0.11 -2.74 16 20 C -0.08 -2.64 5.74 -19.86 -0.11 -2.76 16 21 C -0.13 -4.81 9.27 22.36 0.21 -4.60 16 22 C -0.08 -2.00 5.67 29.74 0.17 -1.83 16 23 C -0.11 -2.01 5.98 30.61 0.18 -1.83 16 24 C -0.12 -2.05 5.98 30.61 0.18 -1.87 16 25 C -0.07 -1.46 5.67 29.74 0.17 -1.29 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.09 4.97 5.36 -2.39 -0.01 4.96 16 32 H 0.03 1.57 7.36 -2.39 -0.02 1.55 16 33 H 0.27 13.66 8.32 -92.71 -0.77 12.88 16 34 H 0.10 3.82 7.63 -2.39 -0.02 3.80 16 35 H 0.09 3.83 8.04 -2.39 -0.02 3.81 16 36 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 37 H 0.14 3.26 8.05 -2.91 -0.02 3.24 16 38 H 0.11 4.00 8.05 -2.91 -0.02 3.98 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 41 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.42 8.12 -2.38 -0.02 1.40 16 Total: -1.00 -65.45 368.65 5.87 -59.58 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.94 Total: 33.87 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.32 Total: -25.72 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -1.37 Total: -72.81 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.05 Total: -35.98 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -65.45 5.87 -59.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072014667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.156 kcal (2) G-P(sol) polarization free energy of solvation -65.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds