Wall clock time and date at job start Fri Apr 10 2020 20:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47042 * 2 1 4 4 H 1.08999 * 109.46740 * 55.00159 * 3 2 1 5 5 C 1.53001 * 109.47302 * 295.00305 * 3 2 1 6 6 C 1.52993 * 109.46853 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47238 * 60.00252 * 6 5 3 8 8 C 1.52999 * 109.47062 * 299.99276 * 7 6 5 9 9 C 1.53000 * 109.46778 * 174.99954 * 3 2 1 10 10 H 1.08999 * 109.47318 * 60.00559 * 9 3 2 11 11 N 1.46499 * 109.47411 * 300.00299 * 9 3 2 12 12 C 1.34772 * 120.00163 * 155.00462 * 11 9 3 13 13 O 1.21548 * 120.00184 * 359.97438 * 12 11 9 14 14 C 1.47882 * 120.00259 * 179.72334 * 12 11 9 15 15 C 1.39925 * 120.02158 * 359.97438 * 14 12 11 16 16 C 1.38329 * 120.35527 * 179.74055 * 15 14 12 17 17 C 1.37756 * 120.41201 * 0.51060 * 16 15 14 18 18 C 1.40748 * 120.03816 * 359.76616 * 17 16 15 19 19 C 1.41437 * 120.17354 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00394 * 334.95781 * 19 18 17 21 21 C 1.39937 * 119.99983 * 154.96772 * 19 18 17 22 22 N 1.30826 * 119.99615 * 342.54609 * 21 19 18 23 23 Si 1.86800 * 120.00239 * 162.54931 * 21 19 18 24 24 H 1.48500 * 109.47269 * 59.99442 * 23 21 19 25 25 H 1.48502 * 109.47243 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46984 * 299.99759 * 23 21 19 27 27 C 1.38994 * 120.02994 * 180.27088 * 14 12 11 28 28 H 1.09001 * 109.47511 * 59.99657 * 1 2 3 29 29 H 1.09000 * 109.47701 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47175 * 299.99783 * 1 2 3 31 31 H 1.09003 * 109.47175 * 240.00217 * 2 1 3 32 32 H 1.08993 * 109.47186 * 120.00362 * 2 1 3 33 33 H 1.08994 * 109.46981 * 59.99485 * 5 3 2 34 34 H 1.08998 * 109.46673 * 300.00272 * 5 3 2 35 35 H 1.08998 * 109.47645 * 299.99605 * 6 5 3 36 36 H 1.09006 * 109.46935 * 179.97438 * 6 5 3 37 37 H 1.09006 * 109.47307 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.47638 * 59.99876 * 7 6 5 39 39 H 1.08999 * 109.47384 * 300.00755 * 8 7 6 40 40 H 1.09002 * 109.47405 * 180.02562 * 8 7 6 41 41 H 0.97000 * 119.99644 * 334.99629 * 11 9 3 42 42 H 1.07999 * 119.82254 * 359.97438 * 15 14 12 43 43 H 1.08006 * 119.79666 * 180.26080 * 16 15 14 44 44 H 1.08007 * 119.97880 * 179.74759 * 17 16 15 45 45 H 0.97003 * 119.99817 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.19769 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1267 -1.3073 6 6 2.1457 3.5689 -1.3075 7 6 3.6705 3.5701 -1.1822 8 6 4.0754 2.8861 0.1252 9 6 3.5648 1.4443 0.1257 10 1 3.9994 0.9054 -0.7161 11 7 3.9524 0.7893 1.3775 12 6 5.1697 0.2224 1.4926 13 8 5.9458 0.2542 0.5578 14 6 5.5632 -0.4335 2.7583 15 6 4.6724 -0.4653 3.8368 16 6 5.0313 -1.0817 5.0220 17 6 6.2733 -1.6618 5.1580 18 6 7.1849 -1.6346 4.0860 19 6 8.4607 -2.2298 4.2223 20 1 8.9033 -2.3402 5.2013 21 6 9.1495 -2.6756 3.0888 22 7 8.5071 -2.8628 1.9646 23 14 10.9862 -3.0034 3.1808 24 1 11.2515 -4.0527 4.1975 25 1 11.4739 -3.4640 1.8559 26 1 11.6934 -1.7545 3.5623 27 6 6.8206 -1.0133 2.8795 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.5489 2.1253 -1.3968 34 1 2.0697 1.5876 -2.1491 35 1 1.7115 4.1082 -0.4657 36 1 1.8577 4.0562 -2.2391 37 1 4.0343 4.5977 -1.1818 38 1 4.1048 3.0309 -2.0240 39 1 3.6411 3.4253 0.9670 40 1 5.1617 2.8874 0.2147 41 1 3.3329 0.7637 2.1235 42 1 3.6978 -0.0096 3.7421 43 1 4.3350 -1.1047 5.8473 44 1 6.5478 -2.1376 6.0880 45 1 8.9846 -3.1721 1.1789 46 1 7.5134 -0.9865 2.0514 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298632068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:58:59 Heat of formation + Delta-G solvation = -56.710134 kcal Electronic energy + Delta-G solvation = -24622.805953 eV Core-core repulsion = 21282.109289 eV Total energy + Delta-G solvation = -3340.696664 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.91930 -38.28772 -36.83384 -34.08851 -33.82583 -33.51566 -30.52720 -29.47587 -29.33487 -28.43167 -25.29187 -23.97229 -23.25681 -21.49003 -20.90742 -20.71906 -20.09041 -19.25745 -17.68029 -16.46304 -15.71724 -15.23450 -14.90767 -14.80664 -14.49242 -14.40228 -14.02805 -13.76911 -13.42391 -13.32752 -13.19272 -12.86559 -12.58931 -12.53694 -12.40777 -11.72684 -11.62099 -11.54321 -11.33397 -11.17259 -11.12068 -11.04469 -10.83451 -10.73811 -10.55019 -10.47889 -10.33043 -10.07483 -9.99641 -9.67729 -9.19905 -8.94442 -8.55084 -7.60953 -7.50513 -6.78553 -4.40419 2.24014 2.83494 3.08251 3.09949 3.17558 3.71863 3.89735 3.93641 4.52914 4.61621 4.68413 4.79219 4.97604 5.11155 5.20101 5.28732 5.39456 5.44009 5.46062 5.55017 5.62171 5.64763 5.65868 5.78545 5.91872 5.93998 5.96394 6.05446 6.07161 6.12062 6.15143 6.19890 6.28541 6.29331 6.38444 6.47279 6.73596 6.96157 7.01099 7.05393 7.22779 7.39776 7.71859 7.78362 7.94256 8.13899 8.22204 8.52035 8.81599 8.84953 9.01650 10.16240 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.003567 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.841121 B = 7848.427720 C = 8480.940488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.092 4.092 4 H 0.073 0.927 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.130 4.130 9 C 0.153 3.847 10 H 0.084 0.916 11 N -0.731 5.731 12 C 0.565 3.435 13 O -0.547 6.547 14 C -0.128 4.128 15 C -0.218 4.218 16 C -0.098 4.098 17 C -0.212 4.212 18 C 0.099 3.901 19 C -0.462 4.462 20 H 0.080 0.920 21 C 0.074 3.926 22 N -0.784 5.784 23 Si 0.910 3.090 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.092 4.092 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.285 0.715 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 8.629 -5.064 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.111 4.111 4 H 0.091 0.909 5 C -0.149 4.149 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.169 4.169 9 C 0.048 3.952 10 H 0.102 0.898 11 N -0.384 5.384 12 C 0.355 3.645 13 O -0.425 6.425 14 C -0.131 4.131 15 C -0.238 4.238 16 C -0.116 4.116 17 C -0.232 4.232 18 C 0.097 3.903 19 C -0.491 4.491 20 H 0.099 0.901 21 C -0.145 4.145 22 N -0.408 5.408 23 Si 0.735 3.265 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.112 4.112 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.132 8.545 -6.000 16.007 hybrid contribution 0.443 -0.255 0.406 0.653 sum -11.690 8.290 -5.594 15.384 Atomic orbital electron populations 1.21811 0.95996 1.01486 1.01553 1.21582 0.95518 0.96033 1.02882 1.21439 0.94534 0.96505 0.98651 0.90886 1.21587 1.00645 0.95571 0.97124 1.21563 0.95973 0.96698 1.01514 1.21497 0.95588 1.00395 0.97980 1.21928 1.01852 0.95591 0.97500 1.20847 0.93432 0.92805 0.88164 0.89797 1.46014 1.17388 1.58930 1.16051 1.18823 0.80580 0.76809 0.88274 1.90687 1.51391 1.59585 1.40809 1.19501 0.97162 1.04034 0.92420 1.20338 0.98637 1.10095 0.94697 1.20432 0.96248 0.98892 0.96066 1.21099 0.94377 1.07720 1.00034 1.17590 0.92478 0.89454 0.90787 1.19557 1.00846 1.34460 0.94207 0.90146 1.25954 1.00685 0.93180 0.94711 1.69784 1.37925 1.31221 1.01875 0.86331 0.82107 0.79732 0.78380 1.18983 1.20223 1.18726 1.21629 0.94379 0.95896 0.99323 0.92723 0.92892 0.92890 0.91911 0.91322 0.91509 0.91761 0.92062 0.92140 0.92031 0.91819 0.92058 0.91249 0.76776 0.89303 0.88970 0.88666 0.90408 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 37.16 0.36 -1.01 16 2 C -0.12 -1.36 5.32 -26.73 -0.14 -1.50 16 3 C -0.09 -1.00 1.77 -90.62 -0.16 -1.16 16 4 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.11 -1.03 4.96 -26.73 -0.13 -1.16 16 6 C -0.12 -1.07 5.92 -26.74 -0.16 -1.23 16 7 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 8 C -0.13 -1.72 5.49 -26.75 -0.15 -1.86 16 9 C 0.15 2.15 1.90 -67.95 -0.13 2.02 16 10 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 11 N -0.73 -12.06 4.26 -54.76 -0.23 -12.29 16 12 C 0.56 12.34 7.74 -12.31 -0.10 12.24 16 13 O -0.55 -13.72 16.00 5.32 0.09 -13.63 16 14 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 15 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 16 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 17 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 18 C 0.10 2.64 5.57 -106.88 -0.59 2.05 16 19 C -0.46 -12.21 9.05 -37.73 -0.34 -12.56 16 20 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 21 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 22 N -0.78 -20.92 10.97 55.55 0.61 -20.31 16 23 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 26 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.09 -2.47 8.23 -38.45 -0.32 -2.79 16 28 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 33 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.40 5.77 6.41 -40.82 -0.26 5.51 16 42 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 43 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 45 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 46 H 0.13 3.86 5.77 -52.48 -0.30 3.56 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -29.05 362.46 -10.38 -39.43 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.40 Total: 10.58 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -3.87 Total: -23.12 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.38 Total: -32.60 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.05 -10.38 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298632068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.285 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds