Wall clock time and date at job start Fri Apr 10 2020 21:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46870 * 299.99560 * 3 2 1 6 6 H 1.48500 * 109.47251 * 59.99605 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 N 1.46499 * 109.47547 * 179.72203 * 14 12 11 16 16 N 1.39515 * 119.12177 * 269.73089 * 15 14 12 17 17 C 1.29976 * 122.69142 * 179.68196 * 16 15 14 18 18 C 1.46303 * 120.01104 * 0.57580 * 17 16 15 19 19 C 1.39615 * 121.85003 * 179.64474 * 18 17 16 20 20 C 1.36693 * 119.66871 * 180.02562 * 19 18 17 21 21 C 1.38899 * 120.91074 * 0.05208 * 20 19 18 22 22 C 1.37767 * 120.70063 * 359.97438 * 21 20 19 23 23 C 1.39420 * 119.38993 * 359.97438 * 22 21 20 24 24 C 1.34937 * 119.12706 * 89.99967 * 15 14 12 25 25 O 1.21815 * 120.62692 * 0.02562 * 24 15 14 26 26 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 28 28 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 29 29 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 30 30 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 31 31 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 32 32 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 33 33 H 1.08002 * 119.99110 * 180.32123 * 17 16 15 34 34 H 1.07994 * 120.17057 * 0.03215 * 19 18 17 35 35 H 1.07993 * 119.54371 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.64841 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.29949 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 7 2.5751 -8.4502 -0.0075 16 7 3.0400 -8.9410 -1.2279 17 6 3.9376 -9.8773 -1.3120 18 6 4.4937 -10.4693 -0.0951 19 6 5.4539 -11.4818 -0.1406 20 6 5.9428 -12.0035 1.0244 21 6 5.4968 -11.5410 2.2559 22 6 4.5498 -10.5433 2.3316 23 6 4.0376 -9.9955 1.1562 24 6 3.0261 -8.9316 1.1696 25 8 2.6019 -8.4917 2.2234 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8896 28 1 0.6240 -2.5566 0.8903 29 1 2.8712 -3.6039 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 0.9424 -7.4824 0.8849 32 1 0.9444 -7.4746 -0.8950 33 1 4.2701 -10.2211 -2.2803 34 1 5.8087 -11.8510 -1.0915 35 1 6.6857 -12.7864 0.9868 36 1 5.8967 -11.9681 3.1637 37 1 4.2080 -10.1883 3.2926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051458607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:00:14 Heat of formation + Delta-G solvation = -51.889787 kcal Electronic energy + Delta-G solvation = -23089.523429 eV Core-core repulsion = 19411.943691 eV Total energy + Delta-G solvation = -3677.579738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32587 -39.91286 -38.67816 -37.31836 -36.10764 -33.70859 -33.32919 -31.88558 -30.93606 -30.37734 -28.51398 -25.13966 -24.71681 -24.11808 -22.40184 -21.41805 -20.62596 -19.00817 -18.76904 -17.69209 -17.29399 -16.39711 -16.11215 -15.98548 -15.78774 -15.58053 -15.14177 -14.88844 -14.45833 -14.31647 -13.93545 -13.58720 -13.30184 -12.93694 -12.57544 -12.47816 -12.36011 -12.31371 -11.97360 -11.25559 -11.21172 -11.04220 -10.76780 -10.71039 -10.45176 -10.06679 -9.92429 -9.65314 -9.61844 -9.55986 -9.27726 -8.70748 -8.43884 -6.09648 -4.13864 0.10253 0.48598 1.71989 1.75964 2.40354 2.50478 3.16383 3.28356 3.35685 3.40921 3.53210 3.61422 3.99047 4.18428 4.36731 4.39882 4.69274 4.75112 4.88605 4.98510 5.12453 5.13904 5.15370 5.27002 5.41355 5.44959 5.65715 5.79961 5.87669 5.93169 6.08718 6.10130 6.28174 6.63761 6.94421 7.39284 7.56403 7.63255 7.65942 7.87133 8.14571 8.25411 8.91715 9.50465 11.01940 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.031782 B = 0.002525 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.781227 B =11087.928655 C =11184.367751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.077 3.923 11 O -0.353 6.353 12 C 0.444 3.556 13 O -0.509 6.509 14 C 0.137 3.863 15 N -0.418 5.418 16 N -0.225 5.225 17 C 0.113 3.887 18 C -0.066 4.066 19 C -0.095 4.095 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.055 4.055 23 C -0.120 4.120 24 C 0.534 3.466 25 O -0.514 6.514 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.199 0.801 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 -28.694 -1.147 30.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.269 6.269 12 C 0.285 3.715 13 O -0.398 6.398 14 C 0.014 3.986 15 N -0.237 5.237 16 N -0.031 5.031 17 C -0.093 4.093 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.133 4.133 22 C -0.074 4.074 23 C -0.126 4.126 24 C 0.325 3.675 25 O -0.388 6.388 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.216 0.784 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.355 -27.546 -0.987 28.802 hybrid contribution 1.128 0.618 0.504 1.381 sum 9.483 -26.928 -0.483 28.553 Atomic orbital electron populations 1.69982 1.06080 1.26885 1.49866 1.24983 0.94928 0.99396 0.94873 0.86412 0.80047 0.83131 0.77705 1.19614 1.20808 1.20803 1.21012 0.93205 0.90088 1.52069 0.92241 1.19185 0.94183 0.88935 0.98973 1.23680 0.96433 0.78467 1.00979 1.86503 1.42222 1.15601 1.82533 1.23675 0.86948 0.87607 0.73299 1.90645 1.15710 1.88116 1.45324 1.20980 0.88721 0.80653 1.08267 1.48587 1.39105 1.34092 1.01923 1.74471 1.11873 1.10691 1.06105 1.25062 0.93041 0.92761 0.98462 1.19785 0.97593 0.97185 0.92433 1.20948 0.95675 0.95372 0.99554 1.21126 0.98720 0.99023 0.92244 1.21340 0.96792 0.96652 0.98550 1.21172 0.94361 0.94105 0.97754 1.20018 0.99580 0.98467 0.94517 1.18610 0.82328 0.82915 0.83633 1.90915 1.58197 1.60297 1.29367 0.92749 0.95235 0.95246 0.92308 0.92269 0.84371 0.84539 0.78440 0.84136 0.84866 0.84713 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.51 16 10 C 0.08 1.79 5.40 37.15 0.20 1.99 16 11 O -0.35 -7.37 10.22 -39.26 -0.40 -7.77 16 12 C 0.44 8.41 8.02 36.00 0.29 8.70 16 13 O -0.51 -11.15 16.18 -18.76 -0.30 -11.45 16 14 C 0.14 1.93 6.24 -5.20 -0.03 1.90 16 15 N -0.42 -6.07 2.99 -62.69 -0.19 -6.25 16 16 N -0.22 -2.76 11.38 31.91 0.36 -2.39 16 17 C 0.11 0.97 11.37 -15.10 -0.17 0.80 16 18 C -0.07 -0.60 5.89 -104.96 -0.62 -1.22 16 19 C -0.10 -0.55 9.81 -39.63 -0.39 -0.94 16 20 C -0.09 -0.50 9.96 -39.90 -0.40 -0.90 16 21 C -0.11 -0.76 10.01 -39.51 -0.40 -1.16 16 22 C -0.06 -0.54 9.67 -39.31 -0.38 -0.92 16 23 C -0.12 -1.44 5.90 -104.80 -0.62 -2.06 16 24 C 0.53 8.16 7.69 -12.72 -0.10 8.07 16 25 O -0.51 -9.15 16.14 5.09 0.08 -9.07 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 30 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.14 1.78 7.38 -51.93 -0.38 1.40 16 32 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.20 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 35 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.14 1.39 7.81 -52.49 -0.41 0.98 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -37.13 335.11 -6.99 -44.12 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -4.14 Total: -3.97 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.17 Total: 0.98 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.91 Total: -34.62 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.62 Total: -28.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.13 -6.99 -44.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051458607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.771 kcal (2) G-P(sol) polarization free energy of solvation -37.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds