Wall clock time and date at job start Fri Apr 10 2020 21:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86795 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47159 * 299.99904 * 3 2 1 6 6 H 1.48501 * 109.47416 * 59.99862 * 3 2 1 7 7 C 1.38650 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99418 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00473 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99927 * 174.97209 * 9 7 2 11 11 C 1.38946 * 120.03142 * 185.37147 * 10 9 7 12 12 C 1.38122 * 120.07012 * 180.02562 * 11 10 9 13 13 C 1.38210 * 120.13521 * 359.97438 * 12 11 10 14 14 C 1.38910 * 120.07005 * 359.97438 * 13 12 11 15 15 N 1.39939 * 120.03964 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99601 * 35.12502 * 15 14 13 17 17 O 1.21583 * 120.00364 * 355.50306 * 16 15 14 18 18 N 1.34787 * 119.99843 * 175.50315 * 16 15 14 19 19 C 1.46500 * 119.99720 * 180.02562 * 18 16 15 20 20 H 1.08994 * 115.58088 * 350.76525 * 19 18 16 21 21 C 1.53117 * 117.51217 * 136.54043 * 19 18 16 22 22 C 1.52461 * 59.85796 * 107.44398 * 21 19 18 23 23 C 1.53248 * 128.58441 * 117.60060 * 22 21 19 24 24 C 1.53892 * 86.98293 * 165.06096 * 23 22 21 25 25 C 1.53253 * 128.58126 * 242.39805 * 22 21 19 26 26 C 1.38730 * 120.03235 * 5.62780 * 10 9 7 27 27 H 0.96996 * 120.00106 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.96303 * 0.02733 * 11 10 9 29 29 H 1.07998 * 119.93472 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.96037 * 179.97438 * 13 12 11 31 31 H 0.97001 * 120.00187 * 215.12783 * 15 14 13 32 32 H 0.96997 * 119.99977 * 359.97438 * 18 16 15 33 33 H 1.09003 * 117.51327 * 359.97438 * 21 19 18 34 34 H 1.09005 * 117.51249 * 214.89487 * 21 19 18 35 35 H 1.09001 * 113.64973 * 279.60997 * 23 22 21 36 36 H 1.09009 * 113.64664 * 50.52487 * 23 22 21 37 37 H 1.08999 * 113.58175 * 89.64681 * 24 23 22 38 38 H 1.08992 * 113.59518 * 220.47193 * 24 23 22 39 39 H 1.09004 * 113.64809 * 309.39024 * 25 22 21 40 40 H 1.09002 * 113.64503 * 80.30118 * 25 22 21 41 41 H 1.08003 * 120.07339 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2126 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1071 11 6 1.4355 -4.7350 -0.2259 12 6 2.1829 -5.8916 -0.3339 13 6 3.5635 -5.8289 -0.3245 14 6 4.2038 -4.6018 -0.2071 15 7 5.6018 -4.5391 -0.1972 16 6 6.3200 -5.3955 -0.9504 17 8 5.7580 -6.2746 -1.5746 18 7 7.6612 -5.2773 -1.0116 19 6 8.4418 -6.2078 -1.8308 20 1 7.8903 -7.0577 -2.2326 21 6 9.5641 -5.6217 -2.6920 22 6 9.8997 -6.4328 -1.4454 23 6 10.6682 -7.7547 -1.3434 24 6 10.7911 -7.4731 0.1645 25 6 10.6345 -5.9793 -0.1793 26 6 3.4557 -3.4389 -0.0921 27 1 -0.4850 0.8400 0.0004 28 1 0.3568 -4.7871 -0.2340 29 1 1.6874 -6.8468 -0.4257 30 1 4.1451 -6.7350 -0.4087 31 1 6.0538 -3.8795 0.3518 32 1 8.1095 -4.5757 -0.5139 33 1 9.7211 -4.5439 -2.6492 34 1 9.7506 -6.0862 -3.6603 35 1 10.0636 -8.6311 -1.5767 36 1 11.6233 -7.7468 -1.8688 37 1 9.9651 -7.8743 0.7518 38 1 11.7673 -7.7266 0.5776 39 1 11.5809 -5.4767 -0.3793 40 1 10.0032 -5.4311 0.5200 41 1 3.9511 -2.4840 0.0040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876426310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:00:46 Heat of formation + Delta-G solvation = 26.415668 kcal Electronic energy + Delta-G solvation = -23429.633550 eV Core-core repulsion = 19891.282486 eV Total energy + Delta-G solvation = -3538.351064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60629 -39.61786 -38.61296 -36.52993 -34.95888 -34.22544 -32.30030 -31.97376 -29.22682 -28.34414 -26.06372 -25.30339 -23.47262 -22.95110 -21.77982 -21.56934 -20.50304 -19.03942 -18.44557 -17.85576 -17.25328 -16.31422 -15.59726 -15.37723 -15.32313 -15.21252 -14.89196 -14.38994 -14.14925 -13.89821 -13.54970 -13.20032 -12.93920 -12.78296 -12.49259 -12.30635 -11.98863 -11.88283 -11.73770 -11.52250 -11.17038 -11.05585 -10.90186 -10.76023 -10.61678 -10.44563 -10.04121 -9.98413 -9.60018 -9.42809 -8.90500 -8.79198 -7.69911 -7.12319 -6.43876 -4.03530 2.06656 2.41698 2.55486 3.09041 3.11954 3.14596 3.17756 3.63441 3.96001 4.03213 4.18549 4.33184 4.45759 4.48615 4.61499 4.63686 5.03682 5.09683 5.31859 5.33388 5.35652 5.38185 5.50106 5.55435 5.58743 5.71171 5.75716 5.96143 6.01001 6.04079 6.10713 6.24368 6.27215 6.40257 6.58659 6.81321 7.02351 7.12987 7.28880 7.36515 7.45213 7.85195 7.99204 8.01747 8.60672 9.01723 9.72746 10.74427 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002987 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.977355 B = 9373.023901 C =10471.623687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.168 3.832 11 C -0.200 4.200 12 C -0.065 4.065 13 C -0.204 4.204 14 C 0.195 3.805 15 N -0.681 5.681 16 C 0.707 3.293 17 O -0.568 6.568 18 N -0.717 5.717 19 C 0.138 3.862 20 H 0.140 0.860 21 C -0.179 4.179 22 C -0.173 4.173 23 C -0.098 4.098 24 C -0.136 4.136 25 C -0.100 4.100 26 C -0.257 4.257 27 H 0.269 0.731 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.402 0.598 32 H 0.397 0.603 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.190 -10.441 -0.372 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.114 3.886 11 C -0.220 4.220 12 C -0.083 4.083 13 C -0.225 4.225 14 C 0.102 3.898 15 N -0.327 5.327 16 C 0.408 3.592 17 O -0.444 6.444 18 N -0.370 5.370 19 C 0.031 3.969 20 H 0.158 0.842 21 C -0.218 4.218 22 C -0.175 4.175 23 C -0.135 4.135 24 C -0.174 4.174 25 C -0.138 4.138 26 C -0.279 4.279 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.237 0.763 32 H 0.231 0.769 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.248 -11.026 -0.933 23.074 hybrid contribution 1.062 1.705 0.424 2.053 sum 21.310 -9.321 -0.509 23.265 Atomic orbital electron populations 1.70047 1.05910 1.27483 1.46365 1.25270 0.95831 0.98759 0.96674 0.85663 0.79007 0.80549 0.78245 1.19260 1.20170 1.20173 1.21314 0.91674 0.80889 1.52875 0.89229 1.84010 1.33949 1.11321 1.78815 1.19044 0.89336 0.88180 0.92032 1.20262 0.99733 0.90303 1.11702 1.20557 0.93120 0.96886 0.97785 1.20717 0.94277 0.96344 1.11117 1.17186 0.79649 0.93747 0.99266 1.42530 1.05583 1.37379 1.47206 1.15818 0.81059 0.82304 0.79985 1.90927 1.69465 1.35485 1.48559 1.44421 1.04936 1.35467 1.52166 1.21258 0.85220 0.94957 0.95437 0.84217 1.23439 1.02954 1.00015 0.95373 1.22881 0.98131 0.99169 0.97339 1.22436 0.99467 0.95168 0.96439 1.22761 1.02004 0.96234 0.96378 1.22431 0.99626 0.96872 0.94839 1.20786 0.93955 0.97051 1.16139 0.92102 0.86407 0.86629 0.85683 0.76328 0.76929 0.88391 0.87849 0.91175 0.89633 0.90016 0.91296 0.89710 0.91533 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.87 9.49 30.88 0.29 -10.58 16 8 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 9 O -0.18 -5.06 9.76 0.03 0.00 -5.06 16 10 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 11 C -0.20 -4.35 9.99 -39.36 -0.39 -4.75 16 12 C -0.06 -1.24 10.03 -39.63 -0.40 -1.64 16 13 C -0.20 -4.01 8.69 -39.34 -0.34 -4.35 16 14 C 0.20 3.79 6.29 -83.72 -0.53 3.27 16 15 N -0.68 -10.45 5.34 -14.24 -0.08 -10.52 16 16 C 0.71 10.88 8.41 -86.91 -0.73 10.15 16 17 O -0.57 -10.84 13.34 5.29 0.07 -10.77 16 18 N -0.72 -7.93 5.55 -58.89 -0.33 -8.25 16 19 C 0.14 1.42 6.43 -68.15 -0.44 0.98 16 20 H 0.14 1.66 7.40 -51.93 -0.38 1.28 16 21 C -0.18 -1.47 10.46 -26.95 -0.28 -1.75 16 22 C -0.17 -1.37 3.01 -154.80 -0.47 -1.84 16 23 C -0.10 -0.67 8.09 -26.14 -0.21 -0.88 16 24 C -0.14 -0.91 8.10 -25.71 -0.21 -1.12 16 25 C -0.10 -0.69 8.08 -26.04 -0.21 -0.90 16 26 C -0.26 -5.61 9.08 -39.21 -0.36 -5.97 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 29 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.13 2.44 6.22 -52.49 -0.33 2.12 16 31 H 0.40 4.81 8.84 -40.82 -0.36 4.45 16 32 H 0.40 3.33 8.55 -40.82 -0.35 2.98 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.46 7.84 -51.93 -0.41 0.05 16 41 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -33.12 347.94 -9.32 -42.43 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.34 Total: 10.68 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -4.63 Total: -14.55 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.36 Total: -43.33 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.07 Total: -15.84 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.12 -9.32 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876426310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.850 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds