Wall clock time and date at job start Fri Apr 10 2020 21:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86795 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47159 * 299.99904 * 3 2 1 6 6 H 1.48501 * 109.47416 * 59.99862 * 3 2 1 7 7 C 1.38650 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99418 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00473 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99927 * 174.97209 * 9 7 2 11 11 C 1.38946 * 120.03142 * 185.37147 * 10 9 7 12 12 C 1.38122 * 120.07012 * 180.02562 * 11 10 9 13 13 C 1.38210 * 120.13521 * 359.97438 * 12 11 10 14 14 C 1.38910 * 120.07005 * 359.97438 * 13 12 11 15 15 N 1.39939 * 120.03964 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99601 * 35.12502 * 15 14 13 17 17 O 1.21583 * 120.00364 * 355.50306 * 16 15 14 18 18 N 1.34787 * 119.99843 * 175.50315 * 16 15 14 19 19 C 1.46500 * 119.99720 * 180.02562 * 18 16 15 20 20 H 1.08994 * 115.58088 * 350.76525 * 19 18 16 21 21 C 1.53117 * 117.51217 * 136.54043 * 19 18 16 22 22 C 1.52461 * 59.85796 * 107.44398 * 21 19 18 23 23 C 1.53248 * 128.58441 * 117.60060 * 22 21 19 24 24 C 1.53892 * 86.98293 * 165.06096 * 23 22 21 25 25 C 1.53253 * 128.58126 * 242.39805 * 22 21 19 26 26 C 1.38730 * 120.03235 * 5.62780 * 10 9 7 27 27 H 0.96996 * 120.00106 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.96303 * 0.02733 * 11 10 9 29 29 H 1.07998 * 119.93472 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.96037 * 179.97438 * 13 12 11 31 31 H 0.97001 * 120.00187 * 215.12783 * 15 14 13 32 32 H 0.96997 * 119.99977 * 359.97438 * 18 16 15 33 33 H 1.09003 * 117.51327 * 359.97438 * 21 19 18 34 34 H 1.09005 * 117.51249 * 214.89487 * 21 19 18 35 35 H 1.09001 * 113.64973 * 279.60997 * 23 22 21 36 36 H 1.09009 * 113.64664 * 50.52487 * 23 22 21 37 37 H 1.08999 * 113.58175 * 89.64681 * 24 23 22 38 38 H 1.08992 * 113.59518 * 220.47193 * 24 23 22 39 39 H 1.09004 * 113.64809 * 309.39024 * 25 22 21 40 40 H 1.09002 * 113.64503 * 80.30118 * 25 22 21 41 41 H 1.08003 * 120.07339 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2126 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1071 11 6 1.4355 -4.7350 -0.2259 12 6 2.1829 -5.8916 -0.3339 13 6 3.5635 -5.8289 -0.3245 14 6 4.2038 -4.6018 -0.2071 15 7 5.6018 -4.5391 -0.1972 16 6 6.3200 -5.3955 -0.9504 17 8 5.7580 -6.2746 -1.5746 18 7 7.6612 -5.2773 -1.0116 19 6 8.4418 -6.2078 -1.8308 20 1 7.8903 -7.0577 -2.2326 21 6 9.5641 -5.6217 -2.6920 22 6 9.8997 -6.4328 -1.4454 23 6 10.6682 -7.7547 -1.3434 24 6 10.7911 -7.4731 0.1645 25 6 10.6345 -5.9793 -0.1793 26 6 3.4557 -3.4389 -0.0921 27 1 -0.4850 0.8400 0.0004 28 1 0.3568 -4.7871 -0.2340 29 1 1.6874 -6.8468 -0.4257 30 1 4.1451 -6.7350 -0.4087 31 1 6.0538 -3.8795 0.3518 32 1 8.1095 -4.5757 -0.5139 33 1 9.7211 -4.5439 -2.6492 34 1 9.7506 -6.0862 -3.6603 35 1 10.0636 -8.6311 -1.5767 36 1 11.6233 -7.7468 -1.8688 37 1 9.9651 -7.8743 0.7518 38 1 11.7673 -7.7266 0.5776 39 1 11.5809 -5.4767 -0.3793 40 1 10.0032 -5.4311 0.5200 41 1 3.9511 -2.4840 0.0040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876426310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:00:45 Heat of formation + Delta-G solvation = 5.218055 kcal Electronic energy + Delta-G solvation = -23430.552748 eV Core-core repulsion = 19891.282486 eV Total energy + Delta-G solvation = -3539.270262 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80082 -40.72421 -40.05792 -38.18533 -35.87112 -35.67769 -34.22986 -32.97955 -30.88150 -29.97696 -27.29901 -26.59517 -24.55420 -23.63219 -23.48076 -22.68681 -21.85624 -20.26818 -19.54655 -19.45966 -18.76174 -17.47298 -16.85359 -16.64864 -16.50066 -16.26703 -16.07590 -15.80954 -15.73877 -15.49740 -15.24959 -14.58121 -14.23163 -13.90057 -13.58958 -13.28748 -13.24477 -13.10857 -12.80274 -12.71157 -12.57570 -12.44926 -12.44432 -12.08734 -11.62682 -11.50126 -11.31980 -11.17601 -11.09412 -10.73187 -10.65006 -9.81697 -9.31676 -8.84773 -8.45516 -6.14183 0.44615 0.71833 1.36252 1.41054 1.45223 1.54583 1.93712 2.18378 2.82459 2.88476 3.00360 3.17266 3.51864 3.52898 3.67824 3.81314 3.94392 3.98170 4.11991 4.34475 4.44681 4.47711 4.56309 4.65119 4.73948 4.85657 4.87608 4.88695 4.91078 5.04738 5.07978 5.12762 5.14238 5.32797 5.38923 5.46540 5.49437 5.50343 5.68209 5.70769 5.92866 6.03114 6.21365 6.88901 6.99034 7.39814 7.78897 8.77856 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002987 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.977355 B = 9373.023901 C =10471.623687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.249 1.249 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.226 6.226 10 C 0.135 3.865 11 C -0.213 4.213 12 C -0.052 4.052 13 C -0.199 4.199 14 C 0.203 3.797 15 N -0.672 5.672 16 C 0.706 3.294 17 O -0.607 6.607 18 N -0.696 5.696 19 C 0.108 3.892 20 H 0.119 0.881 21 C -0.167 4.167 22 C -0.162 4.162 23 C -0.098 4.098 24 C -0.137 4.137 25 C -0.098 4.098 26 C -0.259 4.259 27 H 0.272 0.728 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.420 0.580 32 H 0.412 0.588 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.740 -10.719 -0.365 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.133 6.133 10 C 0.083 3.917 11 C -0.233 4.233 12 C -0.071 4.071 13 C -0.220 4.220 14 C 0.108 3.892 15 N -0.320 5.320 16 C 0.407 3.593 17 O -0.486 6.486 18 N -0.349 5.349 19 C 0.001 3.999 20 H 0.136 0.864 21 C -0.206 4.206 22 C -0.164 4.164 23 C -0.136 4.136 24 C -0.175 4.175 25 C -0.135 4.135 26 C -0.281 4.281 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.171 0.829 30 H 0.151 0.849 31 H 0.257 0.743 32 H 0.249 0.751 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 23.897 -11.331 -0.909 26.463 hybrid contribution 0.111 1.483 0.388 1.537 sum 24.008 -9.848 -0.521 25.955 Atomic orbital electron populations 1.70195 1.08064 1.28728 1.48891 1.26593 0.96838 1.02748 0.95891 0.84525 0.78370 0.74836 0.78436 1.17170 1.19684 1.19341 1.21853 0.92538 0.81328 1.53083 0.87920 1.83981 1.35580 1.12450 1.81263 1.19561 0.90659 0.88039 0.93403 1.20486 1.00245 0.90364 1.12237 1.20932 0.93015 0.97510 0.95633 1.21004 0.94635 0.96680 1.09691 1.17180 0.81528 0.92873 0.97645 1.42362 1.04074 1.38002 1.47555 1.15937 0.82200 0.81670 0.79531 1.90897 1.70578 1.37078 1.50093 1.44215 1.03335 1.35685 1.51685 1.21325 0.86085 0.95042 0.97431 0.86362 1.23495 1.00626 1.00594 0.95854 1.22930 0.95724 1.00011 0.97700 1.22526 0.99885 0.94334 0.96815 1.22760 1.02388 0.96184 0.96122 1.22509 1.00084 0.97031 0.93906 1.20796 0.93194 0.97949 1.16161 0.91864 0.86255 0.82909 0.84918 0.74273 0.75097 0.87591 0.87069 0.91752 0.88020 0.91114 0.89911 0.88160 0.91487 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.20 13.67 21.61 0.30 -55.91 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 4 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.41 -23.61 9.49 67.92 0.64 -22.97 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.54 9.76 -22.82 -0.22 -13.77 16 10 C 0.13 6.76 6.64 22.56 0.15 6.91 16 11 C -0.21 -9.39 9.99 22.41 0.22 -9.17 16 12 C -0.05 -1.94 10.03 22.24 0.22 -1.72 16 13 C -0.20 -7.54 8.69 22.42 0.19 -7.35 16 14 C 0.20 7.68 6.29 38.13 0.24 7.92 16 15 N -0.67 -19.51 5.34 -317.23 -1.69 -21.20 16 16 C 0.71 20.67 8.41 179.05 1.51 22.18 16 17 O -0.61 -22.64 13.34 -3.98 -0.05 -22.69 16 18 N -0.70 -14.07 5.55 -458.48 -2.55 -16.62 16 19 C 0.11 2.05 6.43 44.85 0.29 2.33 16 20 H 0.12 2.80 7.40 -2.39 -0.02 2.78 16 21 C -0.17 -2.33 10.46 30.45 0.32 -2.02 16 22 C -0.16 -2.16 3.01 -52.37 -0.16 -2.32 16 23 C -0.10 -1.11 8.09 30.98 0.25 -0.86 16 24 C -0.14 -1.49 8.10 31.26 0.25 -1.24 16 25 C -0.10 -1.04 8.08 31.04 0.25 -0.79 16 26 C -0.26 -11.33 9.08 22.51 0.20 -11.13 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 29 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.13 4.94 6.22 -2.91 -0.02 4.92 16 31 H 0.42 9.13 8.84 -92.71 -0.82 8.31 16 32 H 0.41 5.82 8.55 -92.71 -0.79 5.03 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 0.72 7.84 -2.39 -0.02 0.70 16 41 H 0.13 5.54 5.64 -2.91 -0.02 5.52 16 Total: -1.00 -74.94 347.94 2.33 -72.61 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.53 Total: 34.54 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 5.06 Total: -21.04 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -3.95 Total: -93.73 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.28 Total: -36.46 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.94 2.33 -72.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876426310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.830 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds