Wall clock time and date at job start Fri Apr 10 2020 21:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.36360 * 125.84135 * 269.36821 * 3 2 1 5 5 C 1.41428 * 107.01369 * 179.97438 * 4 3 2 6 6 C 1.47369 * 126.46854 * 180.02562 * 5 4 3 7 7 O 1.21611 * 120.00274 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00030 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00084 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47257 * 34.99353 * 9 8 6 11 11 C 1.53007 * 109.47284 * 275.00053 * 9 8 6 12 12 C 1.52993 * 109.47545 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47393 * 59.99710 * 12 11 9 14 14 C 1.53007 * 109.47012 * 300.00617 * 13 12 11 15 15 H 1.09006 * 109.46824 * 299.99598 * 14 13 12 16 16 N 1.46498 * 109.46952 * 179.97438 * 14 13 12 17 17 C 1.36941 * 119.99816 * 84.99823 * 16 14 13 18 18 H 1.08001 * 120.00381 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99780 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00229 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47020 * 90.00391 * 21 19 17 23 23 H 1.48504 * 109.46968 * 210.00234 * 21 19 17 24 24 H 1.48495 * 109.47039 * 330.00084 * 21 19 17 25 25 C 1.52993 * 109.47173 * 59.99515 * 14 13 12 26 26 C 1.38131 * 107.06421 * 0.02562 * 5 4 3 27 27 N 1.34434 * 108.38374 * 0.02562 * 26 5 4 28 28 H 0.97000 * 125.38201 * 180.02562 * 27 26 5 29 29 H 1.07997 * 126.48997 * 0.02562 * 4 3 2 30 30 H 0.96996 * 120.00155 * 359.97438 * 8 6 5 31 31 H 1.09006 * 109.46824 * 299.99956 * 11 9 8 32 32 H 1.09001 * 109.47166 * 59.99810 * 11 9 8 33 33 H 1.09006 * 109.46960 * 299.99795 * 12 11 9 34 34 H 1.08998 * 109.47525 * 180.02562 * 12 11 9 35 35 H 1.08994 * 109.47360 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.46998 * 60.00108 * 13 12 11 37 37 H 0.96993 * 120.00102 * 264.99508 * 16 14 13 38 38 H 0.97008 * 120.00273 * 179.97438 * 20 19 17 39 39 H 1.09008 * 109.46979 * 179.97438 * 25 14 13 40 40 H 1.08993 * 109.47270 * 60.00443 * 25 14 13 41 41 H 1.07997 * 125.80392 * 180.25918 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3664 0.0132 1.1053 5 6 4.7050 0.0081 0.6489 6 6 5.9166 0.0172 1.4879 7 8 5.8169 0.0308 2.6999 8 7 7.1351 0.0114 0.9121 9 6 8.3395 0.0209 1.7461 10 1 8.1591 -0.5586 2.6514 11 6 8.6867 1.4623 2.1241 12 6 9.9448 1.4724 2.9946 13 6 11.1084 0.8549 2.2164 14 6 10.7613 -0.5865 1.8383 15 1 10.5813 -1.1663 2.7437 16 7 11.8752 -1.1775 1.0927 17 6 12.9244 -1.7453 1.7650 18 1 12.9309 -1.7571 2.8449 19 6 13.9796 -2.3058 1.0585 20 7 13.9720 -2.2911 -0.2576 21 14 15.4112 -3.0798 1.9756 22 1 15.1292 -4.5189 2.2096 23 1 16.6491 -2.9432 1.1668 24 1 15.5934 -2.3926 3.2793 25 6 9.5031 -0.5965 0.9679 26 6 4.6625 -0.0069 -0.7316 27 7 3.3744 -0.0104 -1.1161 28 1 3.0624 -0.0206 -2.0345 29 1 3.0387 0.0240 2.1343 30 1 7.2147 0.0009 -0.0546 31 1 8.8670 2.0420 1.2188 32 1 7.8576 1.9024 2.6782 33 1 9.7649 0.8926 3.9000 34 1 10.1919 2.4992 3.2643 35 1 12.0046 0.8617 2.8367 36 1 11.2884 1.4347 1.3110 37 1 11.8695 -1.1667 0.1228 38 1 14.7096 -2.6825 -0.7513 39 1 9.2561 -1.6234 0.6982 40 1 9.6830 -0.0168 0.0626 41 1 5.5186 -0.0180 -1.3900 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981020708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:02:03 Heat of formation + Delta-G solvation = 35.800989 kcal Electronic energy + Delta-G solvation = -23317.333201 eV Core-core repulsion = 19811.681866 eV Total energy + Delta-G solvation = -3505.651335 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93577 -39.63175 -37.79229 -36.88674 -34.65049 -33.35565 -31.93125 -31.12471 -30.50670 -29.00318 -27.72843 -24.00333 -23.50616 -22.99991 -21.87084 -20.83466 -20.49633 -20.05790 -19.10787 -17.13991 -16.70207 -16.39817 -15.87126 -15.57330 -14.80831 -14.64604 -14.52888 -14.36315 -13.87694 -13.75211 -13.54955 -13.50384 -13.34052 -13.15858 -13.00720 -12.74710 -12.59911 -12.10955 -12.04696 -10.98856 -10.92214 -10.88269 -10.70527 -10.32482 -10.29783 -10.16359 -10.09475 -9.71205 -9.62802 -9.57964 -8.99420 -8.87736 -8.78937 -6.96307 -5.77517 -3.05777 0.89010 1.48368 1.79998 2.66704 2.94007 3.14269 3.40873 3.43596 3.49278 3.50366 3.60506 4.41062 4.50570 4.58142 4.78941 4.99875 5.10975 5.27883 5.36667 5.47983 5.51469 5.62769 5.70565 5.78012 5.89846 5.99032 6.00087 6.05188 6.13006 6.16893 6.33094 6.36166 6.54311 6.56054 6.61467 6.66572 6.74757 6.97093 6.98306 7.13668 7.57253 7.71021 8.28817 8.41481 9.52742 10.10152 10.44758 11.45225 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.002478 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.858465 B =11295.108975 C =11826.343549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.280 3.720 3 C 0.041 3.959 4 C -0.047 4.047 5 C -0.221 4.221 6 C 0.587 3.413 7 O -0.540 6.540 8 N -0.721 5.721 9 C 0.150 3.850 10 H 0.089 0.911 11 C -0.124 4.124 12 C -0.115 4.115 13 C -0.137 4.137 14 C 0.183 3.817 15 H 0.049 0.951 16 N -0.724 5.724 17 C -0.235 4.235 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.129 4.129 26 C 0.084 3.916 27 N -0.519 5.519 28 H 0.427 0.573 29 H 0.161 0.839 30 H 0.396 0.604 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.357 7.398 -3.631 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.036 4.036 3 C -0.070 4.070 4 C -0.075 4.075 5 C -0.231 4.231 6 C 0.374 3.626 7 O -0.418 6.418 8 N -0.371 5.371 9 C 0.046 3.954 10 H 0.107 0.893 11 C -0.162 4.162 12 C -0.154 4.154 13 C -0.177 4.177 14 C 0.072 3.928 15 H 0.067 0.933 16 N -0.365 5.365 17 C -0.367 4.367 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.168 4.168 26 C -0.058 4.058 27 N -0.113 5.113 28 H 0.265 0.735 29 H 0.178 0.822 30 H 0.229 0.771 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.216 0.784 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.133 7.314 -2.779 22.535 hybrid contribution 1.256 -0.406 -0.938 1.619 sum -19.877 6.908 -3.717 21.369 Atomic orbital electron populations 1.81341 1.11265 1.10348 1.05276 1.24285 0.90801 0.93385 0.95100 1.15162 0.83305 1.21093 0.87479 1.21122 0.90398 0.98125 0.97896 1.19726 0.94131 1.17029 0.92178 1.17312 0.82210 0.75949 0.87167 1.90796 1.86793 1.50266 1.13943 1.45982 1.05531 1.75370 1.10174 1.21025 0.82989 0.96849 0.94546 0.89315 1.21882 0.98072 0.96210 1.00066 1.21488 0.94890 1.00437 0.98569 1.22289 0.97147 0.98661 0.99608 1.20107 0.86558 0.92048 0.94060 0.93323 1.42399 1.19793 1.68607 1.05671 1.19250 0.97124 1.29184 0.91116 0.91131 1.24731 0.98919 1.01921 0.95503 1.69656 1.33021 1.50864 1.04765 0.86207 0.82247 0.79245 0.78616 1.21757 1.21856 1.20752 1.22085 0.94594 1.00857 0.99238 1.22569 0.86296 1.01248 0.95668 1.41566 1.05688 1.55503 1.08587 0.73481 0.82151 0.77054 0.92117 0.92062 0.92156 0.92566 0.91959 0.92703 0.78370 0.93587 0.91293 0.91766 0.79424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.27 18.54 41.84 0.78 -3.49 16 2 C 0.28 2.29 15.88 -22.47 -0.36 1.94 16 3 C 0.04 0.27 6.90 -83.98 -0.58 -0.31 16 4 C -0.05 -0.38 10.59 -39.04 -0.41 -0.80 16 5 C -0.22 -1.83 6.13 -105.01 -0.64 -2.47 16 6 C 0.59 6.78 7.78 -12.54 -0.10 6.68 16 7 O -0.54 -8.51 16.58 5.27 0.09 -8.42 16 8 N -0.72 -7.29 5.07 -54.90 -0.28 -7.56 16 9 C 0.15 1.93 2.46 -67.93 -0.17 1.76 16 10 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 11 C -0.12 -1.56 5.49 -26.73 -0.15 -1.70 16 12 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 13 C -0.14 -2.31 5.50 -26.73 -0.15 -2.45 16 14 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -17.27 5.12 -53.42 -0.27 -17.55 16 17 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 21 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.13 -1.87 4.86 -26.74 -0.13 -2.00 16 26 C 0.08 0.37 11.43 -16.45 -0.19 0.18 16 27 N -0.52 -1.95 6.02 -10.29 -0.06 -2.01 16 28 H 0.43 0.29 8.96 -40.82 -0.37 -0.08 16 29 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.40 2.74 7.51 -40.82 -0.31 2.44 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.38 9.64 7.80 -40.82 -0.32 9.32 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.19 0.16 7.44 -52.49 -0.39 -0.23 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -34.31 353.09 -7.74 -42.04 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.54 Total: 6.16 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.46 Total: -4.74 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.89 Total: -57.41 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.31 -7.74 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981020708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.844 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds