Wall clock time and date at job start Fri Apr 10 2020 21:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46974 * 2 1 4 4 C 1.53002 * 109.47298 * 240.00227 * 2 1 3 5 5 C 1.53002 * 109.47298 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46879 * 59.99960 * 5 4 2 7 7 H 1.08999 * 109.47296 * 60.00010 * 6 5 4 8 8 O 1.42898 * 109.46845 * 179.97438 * 6 5 4 9 9 C 1.35632 * 117.00281 * 271.40171 * 8 6 5 10 10 C 1.38674 * 120.16185 * 5.09876 * 9 8 6 11 11 C 1.38087 * 120.09130 * 180.29890 * 10 9 8 12 12 C 1.38688 * 120.41481 * 359.67235 * 11 10 9 13 13 C 1.37696 * 120.32670 * 0.02562 * 12 11 10 14 14 C 1.39843 * 119.89876 * 0.02562 * 13 12 11 15 15 C 1.47536 * 120.20671 * 180.02562 * 14 13 12 16 16 O 1.21818 * 119.99752 * 180.02562 * 15 14 13 17 17 C 1.41820 * 119.99964 * 0.02562 * 15 14 13 18 18 H 1.08001 * 120.00145 * 19.95124 * 17 15 14 19 19 C 1.40322 * 120.00288 * 199.95243 * 17 15 14 20 20 N 1.30541 * 120.00462 * 204.28910 * 19 17 15 21 21 Si 1.86799 * 119.99924 * 24.28783 * 19 17 15 22 22 H 1.48499 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47406 * 240.00260 * 21 19 17 24 24 H 1.48497 * 109.47276 * 119.99982 * 21 19 17 25 25 C 1.53002 * 109.47188 * 300.00107 * 6 5 4 26 26 C 1.52993 * 109.47298 * 59.99936 * 25 6 5 27 27 H 1.08995 * 109.47263 * 179.97438 * 26 25 6 28 28 C 1.53007 * 109.46972 * 59.99828 * 26 25 6 29 29 H 1.08995 * 109.47263 * 299.99686 * 1 2 3 30 30 H 1.09001 * 109.47472 * 60.00095 * 1 2 3 31 31 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46923 * 299.99804 * 4 2 1 33 33 H 1.09003 * 109.47249 * 59.99997 * 4 2 1 34 34 H 1.08997 * 109.47453 * 300.00318 * 5 4 2 35 35 H 1.09002 * 109.46819 * 179.97438 * 5 4 2 36 36 H 1.07998 * 119.95108 * 0.02562 * 10 9 8 37 37 H 1.07995 * 119.79055 * 179.69439 * 11 10 9 38 38 H 1.08007 * 119.83757 * 180.02562 * 12 11 10 39 39 H 1.07999 * 120.05125 * 180.02562 * 13 12 11 40 40 H 0.96998 * 119.99630 * 5.11899 * 20 19 17 41 41 H 1.09003 * 109.46739 * 179.97438 * 25 6 5 42 42 H 1.08999 * 109.46923 * 300.00131 * 25 6 5 43 43 H 1.08993 * 109.47052 * 60.00415 * 28 26 25 44 44 H 1.09007 * 109.47054 * 179.97438 * 28 26 25 45 45 H 1.08995 * 109.47196 * 300.00125 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 1 3.7175 -2.4694 -0.0001 8 8 5.5095 -1.4416 -0.0009 9 6 6.1250 -2.4732 -0.6306 10 6 5.3770 -3.4106 -1.3269 11 6 6.0047 -4.4637 -1.9623 12 6 7.3851 -4.5897 -1.9157 13 6 8.1450 -3.6654 -1.2344 14 6 7.5231 -2.5941 -0.5853 15 6 8.3308 -1.5995 0.1462 16 8 7.7851 -0.6681 0.7106 17 6 9.7425 -1.7278 0.1921 18 1 10.2540 -2.3316 -0.5428 19 6 10.4746 -1.0702 1.1924 20 7 11.7319 -0.7788 0.9964 21 14 9.6501 -0.6118 2.8047 22 1 8.2311 -1.0489 2.7769 23 1 9.7103 0.8603 2.9905 24 1 10.3530 -1.2817 3.9282 25 6 3.5704 -0.7204 1.2490 26 6 2.0405 -0.7209 1.2493 27 1 1.6772 -0.2075 2.1394 28 6 1.5310 -2.1637 1.2494 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1393 34 1 3.9330 0.3071 -1.2497 35 1 3.9333 -1.2349 -2.1394 36 1 4.3017 -3.3192 -1.3687 37 1 5.4170 -5.1937 -2.4990 38 1 7.8664 -5.4169 -2.4163 39 1 9.2196 -3.7675 -1.2014 40 1 12.1403 -0.9493 0.1333 41 1 3.9338 -1.2343 2.1389 42 1 3.9334 0.3074 1.2487 43 1 1.8946 -2.6772 2.1394 44 1 0.4409 -2.1640 1.2501 45 1 1.8943 -2.6774 0.3595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:03:00 Heat of formation + Delta-G solvation = -86.354522 kcal Electronic energy + Delta-G solvation = -25373.387246 eV Core-core repulsion = 21933.686442 eV Total energy + Delta-G solvation = -3439.700803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.167 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31975 -38.84536 -36.86055 -36.25795 -33.01786 -32.02872 -31.85593 -30.62367 -29.24171 -27.43227 -26.60093 -25.58671 -22.95293 -22.45749 -22.12700 -20.68012 -19.70964 -18.50310 -17.70449 -17.37587 -16.08090 -15.30943 -15.10905 -14.66803 -14.45601 -14.27975 -14.11087 -14.07408 -13.57390 -13.49707 -13.21616 -12.89497 -12.74009 -12.59554 -12.28243 -12.16679 -12.04279 -11.76756 -11.66760 -11.46228 -11.09980 -11.04686 -10.97904 -10.80730 -10.70688 -10.59569 -10.29086 -10.00974 -9.93553 -9.84649 -9.33536 -8.89086 -8.28023 -7.71200 -7.50187 -6.97269 -4.97701 1.69275 2.00918 3.44789 3.52193 3.67171 3.90944 3.96803 4.39644 4.52730 4.55280 4.58976 4.74542 5.01346 5.04438 5.16253 5.19837 5.25083 5.30251 5.32814 5.40761 5.49831 5.52175 5.56588 5.58787 5.66601 5.70308 5.78751 5.82918 5.86151 5.88395 5.98381 6.04692 6.07542 6.16669 6.20742 6.24203 6.32297 6.38844 6.46193 6.60237 6.82486 6.89179 7.11015 7.41220 7.65515 7.97525 8.09437 8.51468 8.71143 10.08672 10.12540 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.004735 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.504848 B = 5911.666333 C = 7124.822158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.143 4.143 6 C 0.078 3.922 7 H 0.070 0.930 8 O -0.265 6.265 9 C 0.157 3.843 10 C -0.231 4.231 11 C -0.088 4.088 12 C -0.178 4.178 13 C -0.053 4.053 14 C -0.141 4.141 15 C 0.390 3.610 16 O -0.559 6.559 17 C -0.587 4.587 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.805 5.805 21 Si 1.080 2.920 22 H -0.252 1.252 23 H -0.282 1.282 24 H -0.304 1.304 25 C -0.110 4.110 26 C -0.081 4.081 27 H 0.075 0.925 28 C -0.156 4.156 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.133 0.867 40 H 0.284 0.716 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.044 -3.830 -3.294 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.181 4.181 6 C 0.021 3.979 7 H 0.088 0.912 8 O -0.177 6.177 9 C 0.110 3.890 10 C -0.250 4.250 11 C -0.106 4.106 12 C -0.196 4.196 13 C -0.071 4.071 14 C -0.143 4.143 15 C 0.290 3.710 16 O -0.455 6.455 17 C -0.617 4.617 18 H 0.094 0.906 19 C -0.151 4.151 20 N -0.431 5.431 21 Si 0.906 3.094 22 H -0.176 1.176 23 H -0.208 1.208 24 H -0.234 1.234 25 C -0.147 4.147 26 C -0.100 4.100 27 H 0.093 0.907 28 C -0.213 4.213 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.151 0.849 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.921 -2.599 -1.545 19.161 hybrid contribution -0.127 -1.093 -2.067 2.342 sum -19.048 -3.692 -3.612 19.736 Atomic orbital electron populations 1.21879 0.95348 1.01827 1.01455 1.21195 0.95275 0.99749 0.94696 0.90938 1.21577 0.94768 1.00842 0.97607 1.22076 0.95551 1.02387 0.98047 1.22462 0.80202 0.99564 0.95672 0.91194 1.86474 1.18760 1.42109 1.70349 1.19400 0.91958 0.86653 0.90983 1.21110 0.99447 0.98737 1.05723 1.20841 0.94623 0.96811 0.98311 1.20940 0.93851 1.00925 1.03890 1.21369 1.00325 0.91986 0.93413 1.21159 0.90745 0.99885 1.02527 1.18046 0.88717 0.83693 0.80588 1.90372 1.75011 1.33317 1.46756 1.21850 0.93793 1.30401 1.15666 0.90550 1.27207 0.94095 0.88990 1.04816 1.70501 1.13589 1.31795 1.27230 0.83288 0.77158 0.77269 0.71684 1.17596 1.20788 1.23352 1.21569 0.94145 1.02089 0.96929 1.21093 0.94384 0.96464 0.98014 0.90658 1.22034 1.00883 0.96273 1.02090 0.92766 0.92900 0.92420 0.91718 0.91790 0.90754 0.91517 0.86128 0.86826 0.86677 0.84894 0.90452 0.90941 0.90559 0.92614 0.92408 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.84 37.15 0.33 -0.84 16 2 C -0.09 -0.88 2.49 -90.62 -0.23 -1.11 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.14 4.93 -26.73 -0.13 -1.27 16 5 C -0.14 -1.94 5.29 -26.73 -0.14 -2.08 16 6 C 0.08 1.21 1.82 -26.73 -0.05 1.16 16 7 H 0.07 1.01 4.34 -51.93 -0.23 0.78 16 8 O -0.27 -5.71 7.87 -40.43 -0.32 -6.02 16 9 C 0.16 3.36 6.66 -38.60 -0.26 3.10 16 10 C -0.23 -3.99 8.43 -39.48 -0.33 -4.33 16 11 C -0.09 -1.39 10.04 -39.47 -0.40 -1.78 16 12 C -0.18 -3.01 10.02 -39.61 -0.40 -3.41 16 13 C -0.05 -1.08 9.41 -39.18 -0.37 -1.45 16 14 C -0.14 -3.37 5.90 -104.69 -0.62 -3.99 16 15 C 0.39 10.88 6.30 -34.42 -0.22 10.66 16 16 O -0.56 -16.70 11.91 -16.75 -0.20 -16.90 16 17 C -0.59 -16.55 8.98 -37.43 -0.34 -16.89 16 18 H 0.08 2.09 6.56 -52.49 -0.34 1.75 16 19 C 0.07 2.01 5.46 -17.32 -0.09 1.92 16 20 N -0.81 -22.67 13.64 55.57 0.76 -21.92 16 21 Si 1.08 27.58 27.30 -169.99 -4.64 22.94 16 22 H -0.25 -6.71 6.00 56.52 0.34 -6.37 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 25 C -0.11 -1.55 5.10 -26.73 -0.14 -1.69 16 26 C -0.08 -0.85 2.72 -90.62 -0.25 -1.10 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 C -0.16 -1.49 8.15 37.16 0.30 -1.19 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 32 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.93 7.36 -51.93 -0.38 0.55 16 36 H 0.12 1.75 5.59 -52.49 -0.29 1.46 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.13 2.69 6.37 -52.49 -0.33 2.36 16 40 H 0.28 7.69 8.72 -40.82 -0.36 7.33 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.47 6.43 -51.92 -0.33 0.13 16 45 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 LS Contribution 343.90 15.07 5.18 5.18 Total: -1.00 -31.54 343.90 -9.23 -40.77 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.70 Total: 0.24 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -3.32 Total: -24.28 kcal Atomic # 7 Polarization: -22.67 SS G_CDS: 0.76 Total: -21.92 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.52 Total: -22.93 kcal Atomic # 14 Polarization: 27.58 SS G_CDS: -4.64 Total: 22.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.54 -9.23 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.586 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds