Wall clock time and date at job start Fri Apr 10 2020 21:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99798 * 169.99983 * 4 3 2 6 6 C 1.50699 * 109.46791 * 290.24804 * 5 4 3 7 7 C 1.38285 * 119.92273 * 95.78879 * 6 5 4 8 8 C 1.38107 * 120.07733 * 180.02562 * 7 6 5 9 9 C 1.38917 * 119.91983 * 359.97438 * 8 7 6 10 10 N 1.39673 * 120.07349 * 179.97438 * 9 8 7 11 11 C 1.46508 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.46499 * 120.00132 * 180.02562 * 10 9 8 13 13 C 1.50694 * 109.47338 * 89.99858 * 12 10 9 14 14 H 1.08006 * 119.99852 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00232 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99936 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00427 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46994 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47482 * 119.99524 * 17 15 13 20 20 H 1.48498 * 109.46966 * 240.00029 * 17 15 13 21 21 C 1.38907 * 119.85230 * 0.25421 * 9 8 7 22 22 C 1.38104 * 119.92328 * 359.48964 * 21 9 8 23 23 C 1.46906 * 110.99961 * 293.95042 * 4 3 2 24 24 C 1.53006 * 117.49674 * 239.52198 * 23 4 3 25 25 C 1.52996 * 59.99868 * 252.51110 * 24 23 4 26 26 H 1.09003 * 109.47363 * 300.00091 * 1 2 3 27 27 H 1.09003 * 109.46975 * 60.00014 * 1 2 3 28 28 H 1.09001 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47260 * 239.99795 * 2 1 3 30 30 H 1.09002 * 109.47304 * 119.99558 * 2 1 3 31 31 H 1.09003 * 109.47061 * 59.99724 * 3 2 1 32 32 H 1.09002 * 109.46655 * 299.99955 * 3 2 1 33 33 H 1.09001 * 109.47022 * 170.24678 * 5 4 3 34 34 H 1.09003 * 109.46941 * 50.25181 * 5 4 3 35 35 H 1.08003 * 119.96560 * 0.03913 * 7 6 5 36 36 H 1.07996 * 120.04034 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.46982 * 270.00262 * 11 10 9 38 38 H 1.08994 * 109.46929 * 30.00254 * 11 10 9 39 39 H 1.08997 * 109.46782 * 150.00245 * 11 10 9 40 40 H 1.09001 * 109.46817 * 210.00012 * 12 10 9 41 41 H 1.09002 * 109.46770 * 329.99527 * 12 10 9 42 42 H 0.97000 * 120.00016 * 180.02562 * 16 15 13 43 43 H 1.08000 * 120.04053 * 179.72893 * 21 9 8 44 44 H 1.08004 * 119.96210 * 180.25642 * 22 21 9 45 45 H 1.08999 * 115.54694 * 25.22814 * 23 4 3 46 46 H 1.09000 * 117.49876 * 0.02562 * 24 23 4 47 47 H 1.09002 * 117.49169 * 145.01951 * 24 23 4 48 48 H 1.08996 * 117.49968 * 252.51139 * 25 24 23 49 49 H 1.09002 * 117.51453 * 107.48201 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0355 2.7931 -0.2375 6 6 3.7571 3.1967 -1.6625 7 6 2.6389 3.9544 -1.9589 8 6 2.3803 4.3256 -3.2637 9 6 3.2454 3.9374 -4.2790 10 7 2.9867 4.3106 -5.5998 11 6 1.8016 5.1119 -5.9159 12 6 3.8997 3.8998 -6.6693 13 6 3.4578 2.5702 -7.2240 14 1 2.5843 2.0799 -6.8200 15 6 4.1690 1.9790 -8.2466 16 7 5.2329 2.5758 -8.7383 17 14 3.6208 0.3312 -8.9347 18 1 2.4047 -0.1258 -8.2154 19 1 3.3162 0.4752 -10.3809 20 1 4.7061 -0.6663 -8.7544 21 6 4.3651 3.1723 -3.9784 22 6 4.6205 2.8090 -2.6707 23 6 4.0349 0.8859 1.2543 24 6 4.9304 1.7874 2.1067 25 6 5.5391 0.6170 1.3317 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.1112 2.7999 -0.0615 34 1 3.5520 3.4963 0.4405 35 1 1.9671 4.2565 -1.1690 36 1 1.5067 4.9170 -3.4946 37 1 0.9623 4.4503 -6.1305 38 1 1.5552 5.7472 -5.0652 39 1 2.0057 5.7342 -6.7871 40 1 3.8886 4.6465 -7.4633 41 1 4.9098 3.8092 -6.2698 42 1 5.7330 2.1601 -9.4579 43 1 5.0373 2.8650 -4.7659 44 1 5.4931 2.2176 -2.4357 45 1 3.3725 0.1954 1.7764 46 1 5.1289 2.7935 1.7374 47 1 4.8571 1.6900 3.1899 48 1 5.8664 -0.2503 1.9051 49 1 6.1384 0.8527 0.4523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180098346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:07:27 Heat of formation + Delta-G solvation = 59.894244 kcal Electronic energy + Delta-G solvation = -24790.510023 eV Core-core repulsion = 21525.276888 eV Total energy + Delta-G solvation = -3265.233135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.57571 -38.46702 -35.79743 -34.92712 -32.88278 -32.31893 -30.42727 -29.70359 -27.80297 -26.62235 -25.09061 -23.96621 -22.66986 -22.24926 -21.71237 -21.46602 -19.88561 -19.29735 -16.89690 -16.52517 -16.30221 -15.90023 -15.20949 -14.85507 -14.44588 -14.36858 -13.99963 -13.72733 -13.67175 -13.20798 -13.07025 -12.86494 -12.76061 -12.40063 -12.12596 -11.92350 -11.77619 -11.59948 -11.50936 -11.42512 -11.24236 -11.10880 -10.92448 -10.85065 -10.68329 -10.67112 -10.38978 -10.33836 -10.22558 -9.87505 -9.71625 -8.80356 -8.49267 -8.24123 -8.05726 -6.44815 -6.00260 -4.15631 2.13197 2.22766 3.26879 3.34985 3.40278 3.65462 3.98458 4.16811 4.42969 4.58878 4.75660 4.80053 4.93005 5.02766 5.06804 5.17547 5.23071 5.29611 5.41280 5.49868 5.54071 5.57374 5.61936 5.63134 5.71071 5.78294 5.80474 5.87980 5.90367 6.00841 6.03382 6.06148 6.13667 6.21257 6.27758 6.30103 6.40193 6.45514 6.65745 6.94560 7.02418 7.09405 7.17621 7.25896 7.29686 7.40164 7.62570 7.82893 8.17227 8.28079 8.50013 8.93642 9.51264 10.97099 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003578 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.777621 B = 7822.777593 C = 8102.282450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.501 5.501 5 C 0.108 3.892 6 C -0.167 4.167 7 C -0.069 4.069 8 C -0.222 4.222 9 C 0.242 3.758 10 N -0.616 5.616 11 C 0.101 3.899 12 C 0.249 3.751 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.188 4.188 22 C -0.049 4.049 23 C 0.022 3.978 24 C -0.223 4.223 25 C -0.172 4.172 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.263 0.737 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 0.012 19.382 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.222 5.222 5 C -0.018 4.018 6 C -0.170 4.170 7 C -0.088 4.088 8 C -0.245 4.245 9 C 0.135 3.865 10 N -0.322 5.322 11 C -0.044 4.044 12 C 0.129 3.871 13 C -0.568 4.568 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.210 4.210 22 C -0.069 4.069 23 C -0.087 4.087 24 C -0.262 4.262 25 C -0.210 4.210 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.118 0.882 47 H 0.107 0.893 48 H 0.112 0.888 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.426 -0.228 18.588 19.109 hybrid contribution -0.511 -0.489 0.071 0.710 sum -4.937 -0.716 18.660 19.315 Atomic orbital electron populations 1.21735 0.95844 1.01561 1.01737 1.21539 0.95169 0.96620 1.02470 1.22187 0.86715 0.97132 1.01128 1.61896 1.07753 1.22250 1.30307 1.20944 0.99698 0.87712 0.93495 1.19131 0.98426 1.05314 0.94149 1.20503 0.95856 0.97198 0.95239 1.20509 1.02270 1.09214 0.92500 1.17939 0.92646 0.91357 0.84586 1.47090 1.26132 1.54514 1.04436 1.21452 0.88527 0.94441 0.99932 1.19299 0.88678 0.95056 0.84040 1.21614 1.12486 1.04809 1.17911 0.92226 1.24955 0.94833 0.97847 0.96427 1.69940 1.17669 1.38881 1.26985 0.86477 0.78813 0.83747 0.78673 1.19716 1.20973 1.20818 1.20890 0.99458 1.03728 0.96933 1.20600 0.97930 0.96576 0.91787 1.22692 0.93122 1.01210 0.91714 1.23583 1.07256 0.96845 0.98514 1.23041 0.96236 0.99333 1.02373 0.93147 0.92436 0.92730 0.90953 0.92475 0.95326 0.89639 0.90494 0.94657 0.87817 0.86994 0.94138 0.92863 0.92085 0.95247 0.94643 0.92728 0.85105 0.87158 0.86768 0.88177 0.89254 0.88828 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 3 C 0.06 0.67 4.77 -3.82 -0.02 0.65 16 4 N -0.50 -6.32 4.67 -228.07 -1.06 -7.38 16 5 C 0.11 1.39 3.76 -4.97 -0.02 1.37 16 6 C -0.17 -2.61 4.86 -104.59 -0.51 -3.12 16 7 C -0.07 -1.06 8.21 -39.61 -0.33 -1.39 16 8 C -0.22 -3.86 9.21 -39.38 -0.36 -4.22 16 9 C 0.24 4.92 6.55 -83.79 -0.55 4.37 16 10 N -0.62 -13.26 2.99 -181.00 -0.54 -13.81 16 11 C 0.10 1.78 10.23 59.85 0.61 2.39 16 12 C 0.25 6.28 4.95 -5.20 -0.03 6.25 16 13 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 14 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.19 -3.84 9.20 -39.38 -0.36 -4.20 16 22 C -0.05 -0.87 9.71 -39.61 -0.38 -1.25 16 23 C 0.02 0.23 5.78 -67.71 -0.39 -0.16 16 24 C -0.22 -2.11 9.51 -26.73 -0.25 -2.36 16 25 C -0.17 -1.71 10.01 -26.73 -0.27 -1.98 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.56 6.45 -51.93 -0.33 0.23 16 31 H 0.03 0.32 8.12 -51.93 -0.42 -0.11 16 32 H 0.09 1.16 6.05 -51.93 -0.31 0.85 16 33 H 0.08 0.96 5.97 -51.93 -0.31 0.65 16 34 H 0.04 0.43 7.84 -51.93 -0.41 0.02 16 35 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.11 1.76 6.14 -52.49 -0.32 1.44 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.80 6.20 -51.93 -0.32 0.47 16 39 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 40 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 41 H 0.04 0.94 6.21 -51.93 -0.32 0.62 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.13 2.96 6.15 -52.49 -0.32 2.64 16 44 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 45 H 0.11 1.11 6.38 -51.93 -0.33 0.78 16 46 H 0.10 0.98 5.87 -51.93 -0.30 0.68 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.10 1.08 7.86 -51.93 -0.41 0.67 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -28.75 383.50 -11.47 -40.22 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.29 Total: 3.23 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.07 Total: -19.49 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.87 Total: -46.25 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.75 -11.47 -40.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180098346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.116 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds