Wall clock time and date at job start Fri Apr 10 2020 21:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00111 * 2 1 4 4 C 1.50700 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.33391 * 122.53664 * 269.97254 * 4 3 2 6 6 S 1.75887 * 109.58714 * 179.77732 * 5 4 3 7 7 C 1.75880 * 90.97291 * 0.31797 * 6 5 4 8 8 C 1.50696 * 125.20205 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47343 * 269.69107 * 8 7 6 10 10 C 1.38854 * 120.00629 * 179.97438 * 9 8 7 11 11 C 1.39566 * 119.84597 * 179.97438 * 10 9 8 12 12 C 1.36338 * 120.16116 * 180.25508 * 11 10 9 13 13 C 1.40893 * 119.83636 * 359.50729 * 12 11 10 14 14 C 1.41133 * 120.15364 * 180.25178 * 13 12 11 15 15 H 1.07994 * 120.00344 * 24.83920 * 14 13 12 16 16 C 1.39866 * 119.99916 * 204.83980 * 14 13 12 17 17 N 1.30910 * 119.99864 * 17.95871 * 16 14 13 18 18 Si 1.86802 * 120.00165 * 197.96719 * 16 14 13 19 19 H 1.48492 * 109.47275 * 59.99742 * 18 16 14 20 20 H 1.48502 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46916 * 299.99642 * 18 16 14 22 22 C 1.40883 * 119.68755 * 0.47142 * 13 12 11 23 23 C 1.36338 * 119.83541 * 359.77859 * 22 13 12 24 24 C 1.33385 * 109.59598 * 359.68349 * 7 6 5 25 25 H 1.09003 * 109.47227 * 60.00412 * 1 2 3 26 26 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47516 * 300.00492 * 1 2 3 28 28 H 1.09004 * 109.47612 * 59.99287 * 3 2 1 29 29 H 1.09003 * 109.46854 * 299.99794 * 3 2 1 30 30 H 1.07989 * 125.20319 * 0.06117 * 5 4 3 31 31 H 1.09007 * 109.47283 * 149.69133 * 8 7 6 32 32 H 1.09002 * 109.47280 * 29.69296 * 8 7 6 33 33 H 0.97005 * 119.99646 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.91752 * 359.97438 * 11 10 9 35 35 H 1.07995 * 120.08351 * 179.74617 * 12 11 10 36 36 H 0.97001 * 120.00040 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.07962 * 179.76054 * 22 13 12 38 38 H 1.08005 * 119.92015 * 179.97438 * 23 22 13 39 39 H 1.07996 * 122.54236 * 180.26627 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2273 1.1305 1.1255 6 16 5.9357 0.9885 0.7321 7 6 5.5731 1.0235 -0.9886 8 6 6.5946 0.9415 -2.0935 9 7 7.0349 2.2918 -2.4528 10 6 7.9807 2.4705 -3.4535 11 6 8.3974 3.7584 -3.7935 12 6 9.3219 3.9416 -4.7787 13 6 9.8645 2.8262 -5.4469 14 6 10.8258 3.0078 -6.4641 15 1 11.4385 3.8971 -6.4756 16 6 10.9851 2.0361 -7.4574 17 7 10.0433 1.1506 -7.6637 18 14 12.5419 2.0016 -8.4893 19 1 13.7181 1.8062 -7.6044 20 1 12.4650 0.8837 -9.4639 21 1 12.6800 3.2871 -9.2198 22 6 9.4395 1.5291 -5.0982 23 6 8.5105 1.3613 -4.1145 24 6 4.2552 1.1274 -1.1660 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8191 1.1625 2.1247 31 1 6.1498 0.4606 -2.9647 32 1 7.4508 0.3584 -1.7542 33 1 6.6662 3.0611 -1.9910 34 1 7.9831 4.6122 -3.2780 35 1 9.6403 4.9390 -5.0435 36 1 10.1536 0.4768 -8.3528 37 1 9.8484 0.6699 -5.6090 38 1 8.1834 0.3675 -3.8463 39 1 3.8019 1.1624 -2.1456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594920607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:08:21 Heat of formation + Delta-G solvation = -4.284944 kcal Electronic energy + Delta-G solvation = -20569.889114 eV Core-core repulsion = 17375.240980 eV Total energy + Delta-G solvation = -3194.648134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04530 -39.60601 -38.11451 -36.68129 -34.89446 -32.29956 -31.35170 -30.20963 -28.66995 -27.31389 -26.55708 -25.62536 -23.33629 -22.46079 -21.63700 -20.01453 -19.14781 -18.54784 -17.68839 -17.33961 -16.83802 -16.82270 -16.28152 -16.18140 -15.62529 -15.40195 -14.72330 -14.55647 -14.34154 -13.95605 -13.88267 -13.81849 -13.54242 -13.27655 -13.16095 -12.83074 -12.73254 -12.66336 -12.52733 -12.27600 -12.20607 -11.67650 -11.58867 -11.19642 -11.06580 -10.64035 -10.33088 -9.74779 -9.42496 -9.40752 -8.54833 -8.19004 -6.00969 -0.09456 0.60767 0.98693 1.11220 1.18947 1.40654 1.50337 1.51561 1.60305 2.27838 2.84540 2.96689 3.15815 3.65658 3.85076 4.02029 4.15988 4.27887 4.37511 4.43531 4.49033 4.50525 4.56056 4.58059 4.62970 4.69804 4.88304 5.03432 5.11302 5.14148 5.27328 5.33404 5.44475 5.45977 5.66922 5.79557 5.95603 6.18993 6.21707 6.38388 6.64973 6.84672 7.08546 7.11167 7.28231 8.48507 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.002435 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.810141 B =11496.622937 C =11864.782674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.122 3.878 4 C -0.123 4.123 5 C -0.184 4.184 6 S 0.126 5.874 7 C -0.205 4.205 8 C 0.211 3.789 9 N -0.746 5.746 10 C 0.111 3.889 11 C -0.162 4.162 12 C -0.195 4.195 13 C 0.035 3.965 14 C -0.505 4.505 15 H 0.069 0.931 16 C 0.031 3.969 17 N -0.841 5.841 18 Si 0.977 3.023 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.262 1.262 22 C -0.144 4.144 23 C -0.174 4.174 24 C -0.107 4.107 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.190 0.810 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.282 0.718 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 -1.771 16.638 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.044 3.956 4 C -0.136 4.136 5 C -0.320 4.320 6 S 0.391 5.609 7 C -0.322 4.322 8 C 0.085 3.915 9 N -0.382 5.382 10 C 0.012 3.988 11 C -0.184 4.184 12 C -0.215 4.215 13 C 0.033 3.967 14 C -0.536 4.536 15 H 0.087 0.913 16 C -0.181 4.181 17 N -0.469 5.469 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.164 4.164 23 C -0.196 4.196 24 C -0.138 4.138 25 H 0.068 0.932 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.207 0.793 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.673 -2.448 17.350 22.854 hybrid contribution -0.867 0.441 -1.477 1.769 sum -15.539 -2.007 15.873 22.303 Atomic orbital electron populations 1.22934 0.79318 1.03775 1.01090 1.87932 1.21475 1.28335 1.95636 1.21090 0.87447 0.84839 1.02210 1.18755 0.96495 1.06229 0.92078 1.25906 0.95789 1.06975 1.03312 1.84371 1.06368 1.71264 0.98855 1.24358 0.97728 1.12321 0.97833 1.19354 0.93512 0.85640 0.93004 1.43901 1.46879 1.06229 1.41171 1.17409 0.94865 0.93067 0.93439 1.20089 1.02116 0.94769 1.01474 1.20759 1.01784 0.97169 1.01811 1.17837 0.93641 0.91746 0.93519 1.19564 1.18958 1.05829 1.09284 0.91328 1.26632 0.99583 0.93869 0.98021 1.69917 1.32412 1.15209 1.29367 0.85339 0.78291 0.78831 0.77695 1.18782 1.19502 1.18598 1.20867 1.00313 0.97284 0.97955 1.20246 1.02269 0.96578 1.00511 1.20155 0.92233 1.01379 1.00077 0.93232 0.88855 0.92573 0.90409 0.91580 0.79272 0.91978 0.92661 0.76957 0.86481 0.88390 0.90740 0.88246 0.87723 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.95 10.69 -148.98 -1.59 -9.55 16 3 C 0.12 1.98 6.19 71.24 0.44 2.42 16 4 C -0.12 -2.47 5.43 -20.92 -0.11 -2.58 16 5 C -0.18 -3.30 10.98 66.72 0.73 -2.57 16 6 S 0.13 2.65 23.33 -56.49 -1.32 1.33 16 7 C -0.20 -5.12 5.88 24.59 0.14 -4.97 16 8 C 0.21 6.29 5.38 85.63 0.46 6.75 16 9 N -0.75 -25.18 5.69 -342.70 -1.95 -27.13 16 10 C 0.11 4.77 6.67 38.67 0.26 5.03 16 11 C -0.16 -7.18 9.82 22.15 0.22 -6.96 16 12 C -0.20 -9.84 9.74 22.48 0.22 -9.63 16 13 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 14 C -0.51 -28.60 9.03 23.38 0.21 -28.39 16 15 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 16 C 0.03 1.65 5.13 85.22 0.44 2.08 16 17 N -0.84 -46.35 10.96 21.82 0.24 -46.11 16 18 Si 0.98 40.42 29.60 68.60 2.03 42.45 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 22 C -0.14 -7.86 8.64 22.47 0.19 -7.67 16 23 C -0.17 -8.24 9.23 22.15 0.20 -8.04 16 24 C -0.11 -2.49 9.85 21.22 0.21 -2.28 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 29 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.19 2.32 8.06 -2.92 -0.02 2.29 16 31 H 0.06 1.93 7.93 -2.38 -0.02 1.91 16 32 H 0.06 1.69 7.92 -2.39 -0.02 1.67 16 33 H 0.40 11.96 8.46 -92.70 -0.78 11.18 16 34 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 37 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 38 H 0.10 4.49 6.68 -2.91 -0.02 4.47 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -64.20 346.39 2.43 -61.77 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.28 Total: 30.63 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 4.74 Total: -53.41 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.71 Total: -73.24 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -1.59 Total: -9.55 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.32 Total: 1.33 kcal Total: -64.20 2.43 -61.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594920607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.483 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds