Wall clock time and date at job start Fri Apr 10 2020 21:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48496 * 109.46715 * 269.99995 * 3 2 1 5 5 H 1.48504 * 109.46958 * 29.99849 * 3 2 1 6 6 H 1.48497 * 109.47056 * 150.00088 * 3 2 1 7 7 C 1.37874 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99559 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.53116 * 109.52281 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.27722 * 177.55930 * 10 9 7 12 12 N 1.46847 * 109.52320 * 300.82094 * 11 10 9 13 13 C 1.38101 * 110.99909 * 185.83967 * 12 11 10 14 14 N 1.28804 * 124.80799 * 0.02562 * 13 12 11 15 15 C 1.34996 * 117.86908 * 179.73205 * 14 13 12 16 16 C 1.41085 * 128.65015 * 180.02562 * 15 14 13 17 17 C 1.37146 * 120.54491 * 179.97438 * 16 15 14 18 18 C 1.39285 * 120.51588 * 359.97438 * 17 16 15 19 19 N 1.39963 * 120.08928 * 180.02562 * 18 17 16 20 20 C 1.38295 * 119.82650 * 359.97438 * 18 17 16 21 21 C 1.39273 * 120.14499 * 0.02704 * 20 18 17 22 22 S 1.75796 * 124.80478 * 179.72171 * 13 12 11 23 23 C 1.46848 * 111.19726 * 61.74301 * 12 11 10 24 24 C 1.53037 * 109.52220 * 298.25587 * 23 12 11 25 25 H 0.96998 * 120.00190 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.57333 * 59.83862 * 9 7 2 27 27 H 1.08999 * 109.50102 * 57.61993 * 10 9 7 28 28 H 1.08995 * 109.50542 * 297.50243 * 10 9 7 29 29 H 1.09004 * 109.45878 * 180.80506 * 11 10 9 30 30 H 1.08997 * 109.45992 * 60.83843 * 11 10 9 31 31 H 1.08004 * 119.72911 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.73895 * 179.97438 * 17 16 15 33 33 H 0.97003 * 119.99820 * 359.97438 * 19 18 17 34 34 H 0.96999 * 120.00150 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.93163 * 179.97438 * 20 18 17 36 36 H 1.08999 * 109.46377 * 58.27277 * 23 12 11 37 37 H 1.08995 * 109.46031 * 178.24554 * 23 12 11 38 38 H 1.09003 * 109.50643 * 299.23666 * 24 23 12 39 39 H 1.09003 * 109.50428 * 179.12527 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2450 -3.6638 0.0015 11 6 1.4752 -4.9851 0.0642 12 7 0.6553 -5.0180 1.2820 13 6 0.0480 -6.2486 1.4365 14 7 0.1789 -7.2403 0.6250 15 6 -0.4761 -8.3843 0.9157 16 6 -0.4939 -9.5971 0.1950 17 6 -1.2242 -10.6661 0.6474 18 6 -1.9599 -10.5719 1.8264 19 7 -2.7016 -11.6687 2.2802 20 6 -1.9547 -9.3922 2.5480 21 6 -1.2167 -8.3002 2.0979 22 16 -1.0073 -6.6860 2.7727 23 6 -0.3384 -3.9369 1.2825 24 6 0.3772 -2.5844 1.2562 25 1 -0.4850 0.8400 0.0004 26 1 0.6212 -2.5580 -0.8860 27 1 2.9004 -3.5830 0.8686 28 1 2.8414 -3.6331 -0.9103 29 1 2.1806 -5.8160 0.0786 30 1 0.8303 -5.0714 -0.8103 31 1 0.0723 -9.6843 -0.7206 32 1 -1.2288 -11.5882 0.0851 33 1 -2.7041 -12.4957 1.7732 34 1 -3.2138 -11.6016 3.1012 35 1 -2.5248 -9.3171 3.4621 36 1 -0.9749 -4.0282 0.4023 37 1 -0.9503 -4.0065 2.1818 38 1 1.0033 -2.4866 2.1431 39 1 -0.3608 -1.7824 1.2409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596190841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:08:29 Heat of formation + Delta-G solvation = 55.821859 kcal Electronic energy + Delta-G solvation = -21640.653496 eV Core-core repulsion = 18480.904539 eV Total energy + Delta-G solvation = -3159.748956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24551 -38.90750 -36.90589 -34.29747 -33.01690 -31.29037 -30.88958 -30.02195 -27.65216 -25.92407 -24.00707 -22.90946 -22.59072 -21.76686 -20.37503 -18.73066 -18.38027 -17.21568 -16.97304 -16.46653 -16.02306 -15.16001 -14.88365 -14.57015 -14.19856 -14.10886 -13.70038 -13.59142 -13.04453 -12.89154 -12.64087 -12.46393 -12.36379 -12.25687 -11.53420 -11.16482 -10.94313 -10.76694 -10.54815 -10.35313 -10.29158 -10.12689 -10.01344 -9.57296 -9.40192 -9.05918 -8.87420 -8.67058 -8.34530 -8.01749 -7.22425 -6.01156 -4.06265 0.76229 1.12407 1.27766 1.86800 2.52033 3.30700 3.37702 3.41190 3.57839 3.73440 3.89888 4.43359 4.55333 4.74215 5.01237 5.22079 5.29260 5.39536 5.61219 5.68920 5.70156 5.88619 5.93974 6.00598 6.10751 6.17747 6.25437 6.30753 6.42913 6.55042 6.75320 6.84074 6.97154 7.16622 7.26375 7.28025 7.43698 7.46671 7.70881 7.95417 7.98392 8.06131 8.42346 8.97131 9.58668 11.05532 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.043513 B = 0.002986 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.325081 B = 9374.005844 C = 9742.746406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.110 4.110 11 C 0.073 3.927 12 N -0.445 5.445 13 C 0.305 3.695 14 N -0.513 5.513 15 C 0.060 3.940 16 C -0.031 4.031 17 C -0.170 4.170 18 C 0.215 3.785 19 N -0.877 5.877 20 C -0.154 4.154 21 C -0.138 4.138 22 S 0.053 5.947 23 C 0.059 3.941 24 C -0.106 4.106 25 H 0.260 0.740 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.399 0.601 34 H 0.398 0.602 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 -20.829 4.439 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.027 3.973 10 C -0.148 4.148 11 C -0.055 4.055 12 N -0.165 5.165 13 C -0.072 4.072 14 N -0.234 5.234 15 C -0.060 4.060 16 C -0.053 4.053 17 C -0.194 4.194 18 C 0.108 3.892 19 N -0.418 5.418 20 C -0.184 4.184 21 C -0.258 4.258 22 S 0.305 5.695 23 C -0.067 4.067 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.227 0.773 34 H 0.226 0.774 35 H 0.141 0.859 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.585 -19.864 5.224 21.286 hybrid contribution -0.149 -0.246 -0.785 0.836 sum -5.735 -20.110 4.439 21.378 Atomic orbital electron populations 1.69848 1.05881 1.26482 1.50954 1.24971 0.94860 0.99086 0.95087 0.86608 0.79911 0.83516 0.78052 1.20769 1.21282 1.19927 1.21167 0.92965 0.90412 1.50263 0.92550 1.18737 0.92750 0.92003 0.93851 1.21795 0.98849 0.93118 1.01083 1.22195 0.95725 1.00018 0.87575 1.58926 1.20841 0.98124 1.38608 1.25457 0.94582 0.95194 0.91975 1.66755 1.26951 1.00506 1.29187 1.18811 0.98868 0.93491 0.94875 1.20401 0.97192 0.89087 0.98572 1.20366 1.02093 0.99657 0.97275 1.17438 0.91607 0.87404 0.92728 1.42416 1.55534 1.13548 1.30251 1.19443 1.05636 0.90991 1.02285 1.23243 1.04494 0.98313 0.99733 1.84900 1.50848 1.05304 1.28472 1.22650 0.92064 0.91521 1.00435 1.21783 1.00623 0.91876 1.00118 0.92982 0.95632 0.92200 0.92135 0.90822 0.93438 0.84946 0.85290 0.77330 0.77400 0.85885 0.93609 0.91518 0.93179 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.38 55.43 0.63 -24.17 16 2 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.64 8.56 -34.44 -0.29 -13.94 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.09 2.16 -91.65 -0.20 0.89 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.07 1.39 4.81 -3.83 -0.02 1.37 16 12 N -0.44 -8.45 4.71 -174.29 -0.82 -9.27 16 13 C 0.30 5.48 6.86 -88.89 -0.61 4.87 16 14 N -0.51 -9.21 9.43 -11.13 -0.10 -9.31 16 15 C 0.06 0.95 6.94 -84.83 -0.59 0.36 16 16 C -0.03 -0.39 10.09 -38.90 -0.39 -0.78 16 17 C -0.17 -1.70 9.84 -39.59 -0.39 -2.09 16 18 C 0.22 2.13 6.76 -83.73 -0.57 1.57 16 19 N -0.88 -5.38 9.10 32.42 0.30 -5.08 16 20 C -0.15 -1.82 9.91 -39.18 -0.39 -2.21 16 21 C -0.14 -2.03 6.51 -38.63 -0.25 -2.28 16 22 S 0.05 0.81 22.48 -107.50 -2.42 -1.60 16 23 C 0.06 1.15 5.34 -3.83 -0.02 1.13 16 24 C -0.11 -2.40 5.12 -26.65 -0.14 -2.54 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.34 7.86 -51.93 -0.41 0.93 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.40 1.62 8.85 -40.82 -0.36 1.25 16 34 H 0.40 1.83 8.84 -40.82 -0.36 1.47 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.19 7.34 -51.93 -0.38 0.80 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.10 2.58 6.18 -51.93 -0.32 2.26 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -29.51 329.63 -11.74 -41.25 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.18 Total: 1.78 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -4.09 Total: -14.52 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.00 Total: -47.83 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.42 Total: -1.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.51 -11.74 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596190841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.076 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds