Wall clock time and date at job start Fri Apr 10 2020 21:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48496 * 109.46715 * 269.99995 * 3 2 1 5 5 H 1.48504 * 109.46958 * 29.99849 * 3 2 1 6 6 H 1.48497 * 109.47056 * 150.00088 * 3 2 1 7 7 C 1.37874 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99559 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.53116 * 109.52281 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.27722 * 177.55930 * 10 9 7 12 12 N 1.46847 * 109.52320 * 300.82094 * 11 10 9 13 13 C 1.38101 * 110.99909 * 185.83967 * 12 11 10 14 14 N 1.28804 * 124.80799 * 0.02562 * 13 12 11 15 15 C 1.34996 * 117.86908 * 179.73205 * 14 13 12 16 16 C 1.41085 * 128.65015 * 180.02562 * 15 14 13 17 17 C 1.37146 * 120.54491 * 179.97438 * 16 15 14 18 18 C 1.39285 * 120.51588 * 359.97438 * 17 16 15 19 19 N 1.39963 * 120.08928 * 180.02562 * 18 17 16 20 20 C 1.38295 * 119.82650 * 359.97438 * 18 17 16 21 21 C 1.39273 * 120.14499 * 0.02704 * 20 18 17 22 22 S 1.75796 * 124.80478 * 179.72171 * 13 12 11 23 23 C 1.46848 * 111.19726 * 61.74301 * 12 11 10 24 24 C 1.53037 * 109.52220 * 298.25587 * 23 12 11 25 25 H 0.96998 * 120.00190 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.57333 * 59.83862 * 9 7 2 27 27 H 1.08999 * 109.50102 * 57.61993 * 10 9 7 28 28 H 1.08995 * 109.50542 * 297.50243 * 10 9 7 29 29 H 1.09004 * 109.45878 * 180.80506 * 11 10 9 30 30 H 1.08997 * 109.45992 * 60.83843 * 11 10 9 31 31 H 1.08004 * 119.72911 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.73895 * 179.97438 * 17 16 15 33 33 H 0.97003 * 119.99820 * 359.97438 * 19 18 17 34 34 H 0.96999 * 120.00150 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.93163 * 179.97438 * 20 18 17 36 36 H 1.08999 * 109.46377 * 58.27277 * 23 12 11 37 37 H 1.08995 * 109.46031 * 178.24554 * 23 12 11 38 38 H 1.09003 * 109.50643 * 299.23666 * 24 23 12 39 39 H 1.09003 * 109.50428 * 179.12527 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2450 -3.6638 0.0015 11 6 1.4752 -4.9851 0.0642 12 7 0.6553 -5.0180 1.2820 13 6 0.0480 -6.2486 1.4365 14 7 0.1789 -7.2403 0.6250 15 6 -0.4761 -8.3843 0.9157 16 6 -0.4939 -9.5971 0.1950 17 6 -1.2242 -10.6661 0.6474 18 6 -1.9599 -10.5719 1.8264 19 7 -2.7016 -11.6687 2.2802 20 6 -1.9547 -9.3922 2.5480 21 6 -1.2167 -8.3002 2.0979 22 16 -1.0073 -6.6860 2.7727 23 6 -0.3384 -3.9369 1.2825 24 6 0.3772 -2.5844 1.2562 25 1 -0.4850 0.8400 0.0004 26 1 0.6212 -2.5580 -0.8860 27 1 2.9004 -3.5830 0.8686 28 1 2.8414 -3.6331 -0.9103 29 1 2.1806 -5.8160 0.0786 30 1 0.8303 -5.0714 -0.8103 31 1 0.0723 -9.6843 -0.7206 32 1 -1.2288 -11.5882 0.0851 33 1 -2.7041 -12.4957 1.7732 34 1 -3.2138 -11.6016 3.1012 35 1 -2.5248 -9.3171 3.4621 36 1 -0.9749 -4.0282 0.4023 37 1 -0.9503 -4.0065 2.1818 38 1 1.0033 -2.4866 2.1431 39 1 -0.3608 -1.7824 1.2409 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596190841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:08:28 Heat of formation + Delta-G solvation = 37.791526 kcal Electronic energy + Delta-G solvation = -21641.435349 eV Core-core repulsion = 18480.904539 eV Total energy + Delta-G solvation = -3160.530810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38728 -40.22717 -38.08120 -35.84533 -34.23040 -32.97100 -31.88748 -31.66512 -28.84436 -27.57692 -25.26938 -24.26154 -24.11957 -23.06732 -21.66573 -20.42786 -19.45203 -18.46821 -18.17332 -17.92138 -17.16676 -16.51340 -16.24351 -16.11151 -15.57876 -15.13410 -15.04483 -14.72462 -14.67049 -14.40888 -14.13796 -13.70408 -13.53635 -13.38241 -13.19528 -12.96560 -12.77883 -12.35771 -12.12405 -12.01762 -11.78213 -11.60542 -11.25194 -11.05870 -10.92019 -10.77196 -10.59527 -10.39937 -9.95757 -9.14002 -8.17137 -8.07403 -6.19882 -0.35523 0.10492 0.20857 0.72388 1.41463 1.43659 1.44969 1.54840 2.45480 2.52400 2.80903 2.95858 3.20423 3.37651 3.79231 4.05150 4.10430 4.20183 4.25925 4.31268 4.38752 4.52893 4.60207 4.64589 4.83613 4.86524 4.96671 5.01568 5.10908 5.17486 5.24217 5.27028 5.47633 5.53438 5.60355 5.70757 5.90792 6.03114 6.11597 6.38998 6.49537 6.77258 6.90109 7.00743 7.47968 8.97964 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.043513 B = 0.002986 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.325081 B = 9374.005844 C = 9742.746406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.100 4.100 11 C 0.086 3.914 12 N -0.451 5.451 13 C 0.268 3.732 14 N -0.521 5.521 15 C 0.012 3.988 16 C -0.035 4.035 17 C -0.161 4.161 18 C 0.236 3.764 19 N -0.856 5.856 20 C -0.171 4.171 21 C -0.142 4.142 22 S 0.064 5.936 23 C 0.073 3.927 24 C -0.094 4.094 25 H 0.261 0.739 26 H -0.005 1.005 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.142 0.858 32 H 0.167 0.833 33 H 0.414 0.586 34 H 0.409 0.591 35 H 0.141 0.859 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 -23.821 5.065 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.138 4.138 11 C -0.043 4.043 12 N -0.172 5.172 13 C -0.109 4.109 14 N -0.242 5.242 15 C -0.108 4.108 16 C -0.057 4.057 17 C -0.185 4.185 18 C 0.125 3.875 19 N -0.396 5.396 20 C -0.201 4.201 21 C -0.262 4.262 22 S 0.316 5.684 23 C -0.054 4.054 24 C -0.133 4.133 25 H 0.070 0.930 26 H 0.013 0.987 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.160 0.840 32 H 0.185 0.815 33 H 0.244 0.756 34 H 0.239 0.761 35 H 0.159 0.841 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.231 -22.932 5.858 24.475 hybrid contribution -0.107 0.343 -0.984 1.048 sum -6.338 -22.589 4.874 23.962 Atomic orbital electron populations 1.69983 1.07076 1.27170 1.51438 1.25713 0.95677 1.02257 0.94817 0.85631 0.78788 0.79585 0.78089 1.20358 1.20926 1.19372 1.21513 0.93102 0.91820 1.50378 0.92787 1.18696 0.93137 0.92671 0.93113 1.21634 0.98122 0.92765 1.01256 1.21980 0.95588 0.99061 0.87650 1.58898 1.20987 0.98677 1.38591 1.25328 0.97084 0.94765 0.93678 1.66659 1.26701 1.01215 1.29601 1.19160 1.00821 0.94089 0.96711 1.20684 0.97589 0.88632 0.98747 1.20763 1.00433 1.00120 0.97172 1.17573 0.90393 0.87550 0.91951 1.42452 1.53756 1.12904 1.30465 1.19702 1.06013 0.90905 1.03476 1.23434 1.04884 0.98429 0.99459 1.84653 1.49983 1.06345 1.27449 1.22368 0.91904 0.90387 1.00703 1.21502 0.99691 0.93108 0.98972 0.92979 0.98729 0.92339 0.91572 0.89840 0.94570 0.83983 0.81548 0.75552 0.76067 0.84088 0.94783 0.89867 0.93889 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 11.38 21.45 0.24 -52.25 16 2 C 0.01 0.77 5.31 84.65 0.45 1.22 16 3 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.53 -29.18 8.56 25.60 0.22 -28.96 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.04 2.14 2.16 -11.46 -0.02 2.11 16 10 C -0.10 -4.25 5.32 30.65 0.16 -4.09 16 11 C 0.09 3.36 4.81 86.33 0.42 3.78 16 12 N -0.45 -17.62 4.71 -705.33 -3.32 -20.94 16 13 C 0.27 9.81 6.86 179.74 1.23 11.04 16 14 N -0.52 -18.92 9.43 -189.13 -1.78 -20.70 16 15 C 0.01 0.37 6.94 39.72 0.28 0.64 16 16 C -0.03 -0.81 10.09 22.71 0.23 -0.58 16 17 C -0.16 -2.59 9.84 22.26 0.22 -2.37 16 18 C 0.24 3.73 6.76 38.11 0.26 3.98 16 19 N -0.86 -6.29 9.10 -51.33 -0.47 -6.75 16 20 C -0.17 -3.57 9.91 22.53 0.22 -3.35 16 21 C -0.14 -4.03 6.51 22.88 0.15 -3.88 16 22 S 0.06 1.97 22.48 -56.49 -1.27 0.70 16 23 C 0.07 2.95 5.34 86.33 0.46 3.41 16 24 C -0.09 -4.48 5.12 30.65 0.16 -4.33 16 25 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.08 3.09 7.86 -2.39 -0.02 3.07 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.41 1.11 8.85 -92.71 -0.82 0.29 16 34 H 0.41 1.81 8.84 -92.71 -0.82 0.99 16 35 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 3.05 7.34 -2.39 -0.02 3.03 16 38 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 4.04 6.18 -2.39 -0.01 4.03 16 Total: -1.00 -65.98 329.63 -0.70 -66.67 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -0.55 Total: 9.02 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 4.43 Total: -21.38 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -5.33 Total: -100.65 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.27 Total: 0.70 kcal Total: -65.98 -0.70 -66.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596190841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.463 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds