Wall clock time and date at job start Fri Apr 10 2020 21:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00165 * 2 1 4 4 N 1.46503 * 109.47389 * 124.70758 * 3 2 1 5 5 C 1.46497 * 119.99798 * 94.71690 * 4 3 2 6 6 C 1.50697 * 109.47217 * 84.38211 * 5 4 3 7 7 H 1.08002 * 120.00089 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00031 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99862 * 179.97438 * 8 6 5 10 10 Si 1.86791 * 120.00042 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46908 * 269.99804 * 10 8 6 12 12 H 1.48500 * 109.47449 * 29.99876 * 10 8 6 13 13 H 1.48501 * 109.47365 * 150.00033 * 10 8 6 14 14 C 1.34776 * 120.00055 * 274.72229 * 4 3 2 15 15 O 1.21284 * 119.99714 * 4.89956 * 14 4 3 16 16 C 1.50692 * 120.00172 * 184.90328 * 14 4 3 17 17 H 1.09004 * 109.70674 * 314.21705 * 16 14 4 18 18 C 1.53467 * 109.71058 * 74.80266 * 16 14 4 19 19 O 1.43178 * 108.23915 * 179.42143 * 18 16 14 20 20 C 1.36104 * 116.70702 * 313.76817 * 19 18 16 21 21 C 1.38704 * 119.40229 * 197.25932 * 20 19 18 22 22 C 1.38199 * 120.06782 * 180.10742 * 21 20 19 23 23 C 1.38253 * 120.11377 * 0.02562 * 22 21 20 24 24 C 1.38197 * 120.11389 * 359.97438 * 23 22 21 25 25 C 1.38703 * 120.06503 * 359.91619 * 24 23 22 26 26 O 1.36109 * 119.39891 * 180.37058 * 25 24 23 27 27 H 1.08011 * 119.99623 * 5.02293 * 1 2 3 28 28 H 1.07998 * 120.00691 * 185.02944 * 1 2 3 29 29 H 1.07997 * 119.99960 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47638 * 4.70449 * 3 2 1 31 31 H 1.09003 * 109.47090 * 244.70776 * 3 2 1 32 32 H 1.09002 * 109.47881 * 324.37661 * 5 4 3 33 33 H 1.09012 * 109.47071 * 204.37552 * 5 4 3 34 34 H 0.97000 * 119.99845 * 180.02562 * 9 8 6 35 35 H 1.08994 * 109.71270 * 299.11262 * 18 16 14 36 36 H 1.09007 * 109.70515 * 59.69594 * 18 16 14 37 37 H 1.07998 * 119.96571 * 0.13585 * 21 20 19 38 38 H 1.07996 * 119.93767 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.94256 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.97180 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9888 1.3348 1.1355 5 6 4.3836 0.9250 0.9546 6 6 5.1868 2.0908 0.4382 7 1 4.7062 3.0418 0.2619 8 6 6.5352 1.9434 0.1907 9 7 7.2360 2.9607 -0.2604 10 14 7.3665 0.2988 0.4963 11 1 7.8705 0.2508 1.8924 12 1 6.3873 -0.7976 0.2855 13 1 8.5026 0.1357 -0.4460 14 6 2.5568 1.7390 2.3464 15 8 1.3833 1.9931 2.5178 16 6 3.5317 1.8754 3.4873 17 1 4.1780 0.9984 3.5254 18 6 4.3829 3.1375 3.2927 19 8 5.2866 3.2434 4.3983 20 6 4.7607 3.0509 5.6387 21 6 5.4662 3.4829 6.7520 22 6 4.9461 3.2924 8.0182 23 6 3.7219 2.6705 8.1789 24 6 3.0137 2.2377 7.0739 25 6 3.5289 2.4278 5.8002 26 8 2.8165 2.0030 4.7211 27 1 -0.5400 0.9318 -0.0819 28 1 -0.5401 -0.9316 0.0820 29 1 1.8499 -0.9353 -0.0004 30 1 1.3583 2.1319 0.0843 31 1 2.6254 1.4002 -0.9292 32 1 4.4315 0.1049 0.2381 33 1 4.7927 0.5968 1.9102 34 1 8.1845 2.8569 -0.4348 35 1 4.9468 3.0609 2.3631 36 1 3.7370 4.0150 3.2596 37 1 6.4228 3.9690 6.6293 38 1 5.4971 3.6300 8.8835 39 1 3.3182 2.5228 9.1697 40 1 2.0578 1.7519 7.2021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292455708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:09:39 Heat of formation + Delta-G solvation = -47.407851 kcal Electronic energy + Delta-G solvation = -25238.703718 eV Core-core repulsion = 21599.432764 eV Total energy + Delta-G solvation = -3639.270954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15713 -39.33151 -37.35040 -36.94218 -35.63488 -33.79208 -32.45058 -30.99828 -30.49238 -28.51319 -28.21277 -26.05729 -24.51598 -22.83756 -22.59536 -21.17810 -19.78064 -18.88709 -18.38107 -17.57432 -17.21052 -16.75588 -16.12433 -15.65497 -15.27941 -14.71650 -14.68693 -14.41912 -14.16805 -14.14979 -13.77589 -13.64825 -13.38723 -13.13743 -12.81582 -12.62805 -12.21398 -11.96196 -11.65434 -11.56595 -11.32883 -11.10560 -10.93271 -10.81763 -10.71915 -10.41039 -10.25313 -9.80226 -9.46405 -9.05888 -8.86398 -8.51263 -8.04827 -7.86368 -6.40925 -4.45502 1.41047 1.45093 2.37790 2.86896 3.01324 3.08841 3.15436 3.19329 3.47151 3.85399 4.01240 4.12122 4.52222 4.86569 4.87978 4.90514 5.05437 5.09002 5.21432 5.36982 5.41375 5.43132 5.52505 5.67658 5.79202 5.98654 6.04566 6.12804 6.18052 6.22394 6.31003 6.42580 6.46881 6.54132 6.75585 6.80799 6.94364 7.02743 7.20455 7.23363 7.65805 7.81177 8.16873 8.54887 8.63188 9.16556 10.69791 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.006167 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.409954 B = 4539.232215 C = 6407.365660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.167 4.167 3 C 0.149 3.851 4 N -0.580 5.580 5 C 0.199 3.801 6 C -0.558 4.558 7 H 0.085 0.915 8 C 0.085 3.915 9 N -0.876 5.876 10 Si 0.867 3.133 11 H -0.269 1.269 12 H -0.263 1.263 13 H -0.280 1.280 14 C 0.529 3.471 15 O -0.535 6.535 16 C 0.040 3.960 17 H 0.106 0.894 18 C 0.019 3.981 19 O -0.294 6.294 20 C 0.051 3.949 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.116 4.116 25 C 0.054 3.946 26 O -0.288 6.288 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.271 0.729 35 H 0.177 0.823 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -3.064 9.224 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.186 4.186 3 C 0.027 3.973 4 N -0.311 5.311 5 C 0.078 3.922 6 C -0.595 4.595 7 H 0.103 0.897 8 C -0.121 4.121 9 N -0.512 5.512 10 Si 0.693 3.307 11 H -0.194 1.194 12 H -0.188 1.188 13 H -0.206 1.206 14 C 0.315 3.685 15 O -0.412 6.412 16 C -0.020 4.020 17 H 0.124 0.876 18 C -0.056 4.056 19 O -0.208 6.208 20 C 0.006 3.994 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.134 4.134 25 C 0.008 3.992 26 O -0.202 6.202 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.194 0.806 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.393 -2.862 9.154 11.003 hybrid contribution 0.686 -0.941 -0.100 1.169 sum -4.707 -3.803 9.055 10.891 Atomic orbital electron populations 1.23749 0.95832 1.01557 1.00504 1.23334 0.96225 0.99113 0.99900 1.20431 0.92233 0.95011 0.89603 1.47784 1.12225 1.63708 1.07396 1.20031 0.77274 0.97267 0.97628 1.21286 0.93660 0.97882 1.46704 0.89685 1.24864 0.97088 0.96532 0.93619 1.69867 1.08380 1.30537 1.42404 0.86973 0.80104 0.84406 0.79221 1.19437 1.18751 1.20559 1.19443 0.87871 0.77947 0.83269 1.90667 1.17215 1.50457 1.82897 1.22964 0.93886 1.01324 0.83784 0.87621 1.24338 0.94462 0.95168 0.91585 1.86452 1.36140 1.86582 1.11639 1.19162 0.93943 0.99329 0.86994 1.20460 1.01085 1.02027 0.90069 1.20852 0.96263 1.00651 0.96220 1.20824 0.95252 1.00233 0.97882 1.20408 1.01403 1.02770 0.88868 1.19056 0.92614 0.99167 0.88346 1.86323 1.35870 1.82374 1.15586 0.88550 0.88870 0.87583 0.90357 0.88638 0.94077 0.95211 0.91920 0.80581 0.90956 0.84876 0.85423 0.85425 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 14.31 29.02 0.42 -2.06 16 2 C -0.17 -2.55 9.81 -36.03 -0.35 -2.90 16 3 C 0.15 2.56 5.78 -5.19 -0.03 2.53 16 4 N -0.58 -11.24 2.45 -176.43 -0.43 -11.67 16 5 C 0.20 4.06 3.85 -5.20 -0.02 4.04 16 6 C -0.56 -13.22 7.22 -34.44 -0.25 -13.47 16 7 H 0.09 2.22 7.93 -52.49 -0.42 1.81 16 8 C 0.09 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.88 -23.68 13.96 55.43 0.77 -22.91 16 10 Si 0.87 18.72 27.47 -169.99 -4.67 14.05 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.53 10.84 6.95 -10.99 -0.08 10.77 16 15 O -0.54 -12.08 16.28 -13.81 -0.22 -12.30 16 16 C 0.04 0.78 2.64 -27.64 -0.07 0.71 16 17 H 0.11 1.99 6.48 -51.93 -0.34 1.65 16 18 C 0.02 0.38 6.45 37.40 0.24 0.62 16 19 O -0.29 -5.79 10.42 -32.86 -0.34 -6.13 16 20 C 0.05 0.91 6.49 -39.13 -0.25 0.66 16 21 C -0.12 -1.72 9.96 -39.42 -0.39 -2.11 16 22 C -0.12 -1.46 10.04 -39.59 -0.40 -1.86 16 23 C -0.12 -1.48 10.04 -39.59 -0.40 -1.88 16 24 C -0.12 -1.68 9.96 -39.42 -0.39 -2.07 16 25 C 0.05 0.95 6.49 -39.14 -0.25 0.70 16 26 O -0.29 -5.68 9.65 -46.88 -0.45 -6.13 16 27 H 0.10 1.31 7.86 -52.48 -0.41 0.90 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.08 1.36 7.30 -51.93 -0.38 0.98 16 31 H 0.10 1.58 8.04 -51.93 -0.42 1.16 16 32 H 0.04 0.82 7.17 -51.93 -0.37 0.45 16 33 H 0.03 0.60 5.33 -51.92 -0.28 0.32 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.18 3.81 4.59 -51.93 -0.24 3.57 16 36 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 37 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -28.64 335.93 -7.59 -36.23 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.98 Total: 8.09 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.33 Total: -4.29 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.34 Total: -34.58 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -1.02 Total: -24.56 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.67 Total: 14.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.64 -7.59 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292455708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.175 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds