Wall clock time and date at job start Fri Apr 10 2020 21:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46904 * 2 1 4 4 C 1.52998 * 109.46618 * 119.99098 * 2 1 3 5 5 N 1.46499 * 109.47756 * 294.99996 * 4 2 1 6 6 C 1.36937 * 120.00402 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99707 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00293 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99706 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47048 * 90.00033 * 10 8 6 12 12 H 1.48497 * 109.47023 * 210.00118 * 10 8 6 13 13 H 1.48500 * 109.47132 * 330.00261 * 10 8 6 14 14 C 1.52990 * 109.47432 * 239.99352 * 2 1 3 15 15 N 1.46504 * 109.47375 * 65.00053 * 14 2 1 16 16 C 1.34772 * 120.00025 * 180.02562 * 15 14 2 17 17 O 1.21593 * 120.00454 * 359.97438 * 16 15 14 18 18 C 1.47498 * 119.99650 * 180.02562 * 16 15 14 19 19 C 1.36894 * 120.61115 * 179.97438 * 18 16 15 20 20 C 1.40127 * 119.26061 * 179.97438 * 19 18 16 21 21 N 1.31144 * 120.46370 * 359.97438 * 20 19 18 22 22 C 1.33695 * 121.18569 * 0.02562 * 21 20 19 23 23 C 1.39072 * 132.55851 * 180.02562 * 22 21 20 24 24 C 1.38500 * 107.66783 * 179.97438 * 23 22 21 25 25 N 1.31531 * 109.04056 * 0.02562 * 24 23 22 26 26 N 1.37295 * 120.63937 * 0.02562 * 22 21 20 27 27 H 1.09004 * 109.47306 * 300.01063 * 1 2 3 28 28 H 1.09003 * 109.46954 * 60.00285 * 1 2 3 29 29 H 1.08993 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47592 * 55.00539 * 4 2 1 31 31 H 1.09004 * 109.46771 * 175.00347 * 4 2 1 32 32 H 0.97005 * 119.99412 * 0.02562 * 5 4 2 33 33 H 0.97003 * 119.99625 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47278 * 305.00453 * 14 2 1 35 35 H 1.09000 * 109.47163 * 185.00129 * 14 2 1 36 36 H 0.97002 * 119.99751 * 359.97438 * 15 14 2 37 37 H 1.07999 * 120.36915 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.77012 * 180.02562 * 20 19 18 39 39 H 1.07997 * 126.16516 * 359.97438 * 23 22 21 40 40 H 1.08004 * 125.48052 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6523 0.0356 2.4424 6 6 2.0009 -0.4204 3.6857 7 1 2.5618 -1.3377 3.7867 8 6 1.6331 0.2964 4.8161 9 7 0.9491 1.4141 4.6930 10 14 2.1092 -0.3253 6.5121 11 1 3.4314 0.2343 6.8913 12 1 1.0880 0.1037 7.5012 13 1 2.1866 -1.8081 6.4920 14 6 2.0401 -0.7213 -1.2491 15 7 1.6526 0.0351 -2.4424 16 6 1.9958 -0.4140 -3.6658 17 8 2.6274 -1.4468 -3.7793 18 6 1.6061 0.3479 -4.8671 19 6 1.9485 -0.0964 -6.1159 20 6 1.5631 0.6496 -7.2378 21 7 0.8816 1.7609 -7.0953 22 6 0.5376 2.2116 -5.8845 23 6 -0.1675 3.3341 -5.4641 24 6 -0.2278 3.2990 -4.0808 25 7 0.3984 2.2250 -3.6512 26 7 0.8916 1.5186 -4.7533 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6053 -1.7196 1.2954 31 1 3.1262 -0.7993 1.2058 32 1 1.1482 0.8594 2.3517 33 1 0.6925 1.9151 5.4830 34 1 1.6054 -1.7199 -1.2949 35 1 3.1264 -0.7995 -1.2053 36 1 1.1483 0.8588 -2.3519 37 1 2.5093 -1.0116 -6.2350 38 1 1.8285 0.3064 -8.2269 39 1 -0.5917 4.0959 -6.1013 40 1 -0.7106 4.0354 -3.4555 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:10:43 Heat of formation + Delta-G solvation = 96.906265 kcal Electronic energy + Delta-G solvation = -23816.423299 eV Core-core repulsion = 20247.995776 eV Total energy + Delta-G solvation = -3568.427522 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.77242 -39.98756 -38.42022 -36.91872 -34.71618 -34.29743 -32.48146 -31.46568 -30.07685 -29.55816 -27.17097 -25.95456 -24.93645 -23.80118 -22.86756 -21.99470 -21.01720 -19.95648 -18.82441 -17.87754 -17.40142 -16.93713 -16.65897 -16.16062 -15.75099 -15.46330 -14.86753 -14.56116 -14.34945 -14.04491 -13.90342 -13.63154 -13.40268 -13.10806 -13.07790 -12.71895 -12.37931 -12.07007 -11.69619 -11.58968 -11.07453 -10.92882 -10.83575 -10.69751 -10.56601 -10.44228 -10.25949 -10.01290 -9.98380 -9.68847 -9.23733 -8.88216 -8.40429 -6.92890 -5.77232 -3.05789 -0.33547 0.37859 1.47765 2.02361 2.52979 2.64897 3.05042 3.36849 3.43672 3.48797 3.50449 3.60841 4.05746 4.39688 4.57197 4.59058 4.77751 4.95237 4.98261 5.08226 5.16874 5.34286 5.37370 5.52116 5.56976 5.75377 5.87379 5.88713 5.92787 6.05822 6.08756 6.19971 6.32691 6.39200 6.64264 6.75728 6.84405 6.90045 7.08100 7.27281 7.69966 7.81462 8.41730 9.53038 10.10168 10.45105 11.45758 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.002740 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.523678 B =10216.962283 C =11098.626574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.078 0.922 4 C 0.162 3.838 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.122 3.878 15 N -0.700 5.700 16 C 0.553 3.447 17 O -0.519 6.519 18 C 0.146 3.854 19 C -0.155 4.155 20 C 0.177 3.823 21 N -0.448 5.448 22 C 0.254 3.746 23 C -0.252 4.252 24 C 0.100 3.900 25 N -0.317 5.317 26 N -0.305 5.305 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.023 0.977 31 H 0.021 0.979 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.418 0.582 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.167 0.833 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 1.330 -26.227 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C -0.001 4.001 15 N -0.355 5.355 16 C 0.336 3.664 17 O -0.396 6.396 18 C 0.027 3.973 19 C -0.180 4.180 20 C -0.008 4.008 21 N -0.159 5.159 22 C 0.026 3.974 23 C -0.283 4.283 24 C -0.077 4.077 25 N -0.143 5.143 26 N -0.079 5.079 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.261 0.739 37 H 0.199 0.801 38 H 0.207 0.793 39 H 0.184 0.816 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.981 0.546 -25.569 25.593 hybrid contribution -0.150 0.401 0.930 1.024 sum -1.132 0.948 -24.639 24.683 Atomic orbital electron populations 1.21798 0.94512 1.01904 1.01759 1.21550 0.96933 1.00585 0.93860 0.90403 1.20566 0.96601 0.94193 0.85302 1.42336 1.66929 1.27703 1.00544 1.19234 1.28694 1.05468 0.83624 0.91144 1.24739 1.00994 0.97426 0.97867 1.69657 1.43480 1.16626 1.28504 0.86176 0.77583 0.78013 0.84347 1.21727 1.21772 1.20754 1.21594 1.00527 0.95384 0.82608 1.46448 1.55343 1.28545 1.05169 1.17523 0.81162 0.85000 0.82727 1.90869 1.39816 1.22878 1.86006 1.20891 0.94163 0.85006 0.97200 1.22200 1.02598 1.03697 0.89517 1.23484 0.89409 0.88002 0.99918 1.67977 1.12789 1.14440 1.20668 1.20788 0.99506 0.95053 0.82048 1.21079 1.11755 1.00619 0.94845 1.23901 0.94615 0.94499 0.94646 1.77375 1.22308 1.09833 1.04820 1.47437 1.35771 1.16220 1.08511 0.90970 0.93748 0.92846 0.95923 0.96091 0.78163 0.93517 0.90721 0.90724 0.73918 0.80133 0.79328 0.81570 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.94 37.16 0.33 -1.91 16 2 C -0.11 -1.78 2.46 -90.62 -0.22 -2.01 16 3 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.16 3.24 5.65 -4.04 -0.02 3.22 16 5 N -0.73 -18.46 5.33 -59.91 -0.32 -18.78 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.12 1.76 5.06 -4.04 -0.02 1.74 16 15 N -0.70 -9.58 5.28 -61.36 -0.32 -9.90 16 16 C 0.55 7.46 7.79 -12.49 -0.10 7.36 16 17 O -0.52 -7.91 16.36 5.28 0.09 -7.82 16 18 C 0.15 1.65 6.82 -81.98 -0.56 1.09 16 19 C -0.15 -1.22 9.61 -39.36 -0.38 -1.60 16 20 C 0.18 1.15 11.26 -17.14 -0.19 0.95 16 21 N -0.45 -4.27 10.44 -12.24 -0.13 -4.40 16 22 C 0.25 2.78 7.93 -155.56 -1.23 1.55 16 23 C -0.25 -2.32 10.91 -39.18 -0.43 -2.75 16 24 C 0.10 0.90 11.93 -17.58 -0.21 0.69 16 25 N -0.32 -3.76 9.92 30.46 0.30 -3.45 16 26 N -0.31 -3.61 3.94 -8.87 -0.03 -3.64 16 27 H 0.07 1.30 7.18 -51.93 -0.37 0.93 16 28 H 0.04 0.62 7.18 -51.93 -0.37 0.25 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.38 10.13 6.85 -40.82 -0.28 9.85 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.42 5.65 4.68 -40.82 -0.19 5.46 16 37 H 0.18 1.05 7.65 -52.49 -0.40 0.65 16 38 H 0.19 0.35 8.06 -52.49 -0.42 -0.07 16 39 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.20 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -34.47 341.77 -7.81 -42.29 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.97 Total: 9.65 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.28 Total: 0.94 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: 0.22 Total: -67.70 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.47 -7.81 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.193 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds