Wall clock time and date at job start Fri Apr 10 2020 21:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46904 * 2 1 4 4 C 1.52998 * 109.46618 * 119.99098 * 2 1 3 5 5 N 1.46499 * 109.47756 * 294.99996 * 4 2 1 6 6 C 1.36937 * 120.00402 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99707 * 180.02562 * 6 5 4 9 9 N 1.31612 * 120.00293 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99706 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47048 * 90.00033 * 10 8 6 12 12 H 1.48497 * 109.47023 * 210.00118 * 10 8 6 13 13 H 1.48500 * 109.47132 * 330.00261 * 10 8 6 14 14 C 1.52990 * 109.47432 * 239.99352 * 2 1 3 15 15 N 1.46504 * 109.47375 * 65.00053 * 14 2 1 16 16 C 1.34772 * 120.00025 * 180.02562 * 15 14 2 17 17 O 1.21593 * 120.00454 * 359.97438 * 16 15 14 18 18 C 1.47498 * 119.99650 * 180.02562 * 16 15 14 19 19 C 1.36894 * 120.61115 * 179.97438 * 18 16 15 20 20 C 1.40127 * 119.26061 * 179.97438 * 19 18 16 21 21 N 1.31144 * 120.46370 * 359.97438 * 20 19 18 22 22 C 1.33695 * 121.18569 * 0.02562 * 21 20 19 23 23 C 1.39072 * 132.55851 * 180.02562 * 22 21 20 24 24 C 1.38500 * 107.66783 * 179.97438 * 23 22 21 25 25 N 1.31531 * 109.04056 * 0.02562 * 24 23 22 26 26 N 1.37295 * 120.63937 * 0.02562 * 22 21 20 27 27 H 1.09004 * 109.47306 * 300.01063 * 1 2 3 28 28 H 1.09003 * 109.46954 * 60.00285 * 1 2 3 29 29 H 1.08993 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47592 * 55.00539 * 4 2 1 31 31 H 1.09004 * 109.46771 * 175.00347 * 4 2 1 32 32 H 0.97005 * 119.99412 * 0.02562 * 5 4 2 33 33 H 0.97003 * 119.99625 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47278 * 305.00453 * 14 2 1 35 35 H 1.09000 * 109.47163 * 185.00129 * 14 2 1 36 36 H 0.97002 * 119.99751 * 359.97438 * 15 14 2 37 37 H 1.07999 * 120.36915 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.77012 * 180.02562 * 20 19 18 39 39 H 1.07997 * 126.16516 * 359.97438 * 23 22 21 40 40 H 1.08004 * 125.48052 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6523 0.0356 2.4424 6 6 2.0009 -0.4204 3.6857 7 1 2.5618 -1.3377 3.7867 8 6 1.6331 0.2964 4.8161 9 7 0.9491 1.4141 4.6930 10 14 2.1092 -0.3253 6.5121 11 1 3.4314 0.2343 6.8913 12 1 1.0880 0.1037 7.5012 13 1 2.1866 -1.8081 6.4920 14 6 2.0401 -0.7213 -1.2491 15 7 1.6526 0.0351 -2.4424 16 6 1.9958 -0.4140 -3.6658 17 8 2.6274 -1.4468 -3.7793 18 6 1.6061 0.3479 -4.8671 19 6 1.9485 -0.0964 -6.1159 20 6 1.5631 0.6496 -7.2378 21 7 0.8816 1.7609 -7.0953 22 6 0.5376 2.2116 -5.8845 23 6 -0.1675 3.3341 -5.4641 24 6 -0.2278 3.2990 -4.0808 25 7 0.3984 2.2250 -3.6512 26 7 0.8916 1.5186 -4.7533 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6053 -1.7196 1.2954 31 1 3.1262 -0.7993 1.2058 32 1 1.1482 0.8594 2.3517 33 1 0.6925 1.9151 5.4830 34 1 1.6054 -1.7199 -1.2949 35 1 3.1264 -0.7995 -1.2053 36 1 1.1483 0.8588 -2.3519 37 1 2.5093 -1.0116 -6.2350 38 1 1.8285 0.3064 -8.2269 39 1 -0.5917 4.0959 -6.1013 40 1 -0.7106 4.0354 -3.4555 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753619082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:10:42 Heat of formation + Delta-G solvation = 73.040343 kcal Electronic energy + Delta-G solvation = -23817.458203 eV Core-core repulsion = 20247.995776 eV Total energy + Delta-G solvation = -3569.462426 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.47370 -41.01077 -39.13210 -38.30293 -36.11372 -35.29154 -34.09295 -32.15060 -31.92970 -30.25863 -28.27401 -27.49174 -26.16498 -24.59529 -24.30193 -23.07367 -21.99928 -21.28308 -19.72896 -19.17298 -18.49266 -18.03807 -17.47177 -17.31955 -16.71262 -16.54298 -16.31957 -15.71625 -15.49599 -15.47464 -15.10113 -14.69998 -14.56817 -14.24448 -13.97720 -13.78014 -13.73057 -13.64532 -12.98363 -12.82399 -12.41822 -12.36660 -12.24772 -12.19100 -12.07459 -11.86992 -11.73127 -11.59239 -11.02981 -10.95825 -10.68360 -10.34659 -9.11815 -9.01374 -7.96288 -5.25135 -1.05468 -0.26124 0.78365 1.23768 1.46984 1.48703 1.57151 1.69190 1.71014 2.34887 2.55169 2.74205 2.87778 3.30756 3.37361 3.61092 3.84066 3.86628 3.93480 3.99249 4.09578 4.28971 4.37652 4.44310 4.47155 4.60317 4.62182 4.80287 4.85887 4.93450 4.95268 5.05633 5.12416 5.25931 5.28992 5.37182 5.44234 5.48714 6.08844 6.25953 6.32142 6.44642 6.78126 7.32665 8.07106 8.31388 9.27315 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.002740 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.523678 B =10216.962283 C =11098.626574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 H 0.071 0.929 4 C 0.160 3.840 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.076 0.924 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.132 3.868 15 N -0.703 5.703 16 C 0.555 3.445 17 O -0.543 6.543 18 C 0.108 3.892 19 C -0.128 4.128 20 C 0.191 3.809 21 N -0.462 5.462 22 C 0.232 3.768 23 C -0.256 4.256 24 C 0.099 3.901 25 N -0.353 5.353 26 N -0.316 5.316 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.376 0.624 33 H 0.252 0.748 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.419 0.581 37 H 0.203 0.797 38 H 0.241 0.759 39 H 0.187 0.813 40 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 0.749 -28.160 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.090 0.910 4 C 0.033 3.967 5 N -0.386 5.386 6 C -0.379 4.379 7 H 0.094 0.906 8 C -0.267 4.267 9 N -0.619 5.619 10 Si 0.803 3.197 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.195 1.195 14 C 0.008 3.992 15 N -0.358 5.358 16 C 0.339 3.661 17 O -0.421 6.421 18 C -0.009 4.009 19 C -0.153 4.153 20 C 0.006 3.994 21 N -0.174 5.174 22 C 0.005 3.995 23 C -0.286 4.286 24 C -0.077 4.077 25 N -0.180 5.180 26 N -0.091 5.091 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.208 0.792 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.262 0.738 37 H 0.220 0.780 38 H 0.257 0.743 39 H 0.204 0.796 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.647 -0.054 -27.530 27.538 hybrid contribution -0.223 0.550 1.362 1.486 sum -0.871 0.496 -26.168 26.187 Atomic orbital electron populations 1.21694 0.94074 1.01982 1.01341 1.21325 0.97099 0.99891 0.93098 0.91040 1.20699 0.96712 0.94145 0.85177 1.42519 1.66830 1.27825 1.01386 1.19638 1.27894 1.05402 0.84921 0.90647 1.25570 1.01646 0.97904 1.01613 1.69811 1.45021 1.17936 1.29163 0.85128 0.76944 0.77999 0.79613 1.21399 1.22093 1.19464 1.21371 1.00376 0.95235 0.82199 1.46423 1.55612 1.28578 1.05188 1.17797 0.80386 0.84779 0.83143 1.90841 1.40917 1.23904 1.86477 1.20845 0.96856 0.85939 0.97293 1.22677 1.00301 1.03725 0.88633 1.24343 0.87218 0.86396 1.01439 1.68074 1.13696 1.15678 1.19922 1.21242 1.00147 0.95682 0.82427 1.21451 1.11335 1.00661 0.95180 1.24455 0.93826 0.94188 0.95185 1.77270 1.23698 1.11090 1.05916 1.47459 1.36456 1.16519 1.08662 0.93482 0.91951 0.92483 0.95558 0.95839 0.79186 0.93947 0.90431 0.90794 0.73755 0.77978 0.74307 0.79585 0.74956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.94 71.98 0.64 -3.58 16 2 C -0.09 -3.09 2.46 -10.80 -0.03 -3.11 16 3 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.16 6.42 5.65 86.38 0.49 6.90 16 5 N -0.74 -38.02 5.33 -343.45 -1.83 -39.86 16 6 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 7 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 8 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 9 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 10 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 C 0.13 3.76 5.06 86.38 0.44 4.19 16 15 N -0.70 -19.13 5.28 -466.32 -2.46 -21.59 16 16 C 0.55 14.72 7.79 86.69 0.68 15.40 16 17 O -0.54 -16.20 16.36 -4.01 -0.07 -16.26 16 18 C 0.11 2.34 6.82 40.36 0.28 2.61 16 19 C -0.13 -1.71 9.61 22.41 0.22 -1.49 16 20 C 0.19 1.84 11.26 85.25 0.96 2.80 16 21 N -0.46 -7.81 10.44 -192.63 -2.01 -9.82 16 22 C 0.23 4.83 7.93 133.23 1.06 5.88 16 23 C -0.26 -4.43 10.91 22.53 0.25 -4.18 16 24 C 0.10 1.71 11.93 84.80 1.01 2.73 16 25 N -0.35 -8.30 9.92 -57.54 -0.57 -8.87 16 26 N -0.32 -7.30 3.94 -181.98 -0.72 -8.01 16 27 H 0.05 1.73 7.18 -2.38 -0.02 1.71 16 28 H 0.06 1.73 7.18 -2.39 -0.02 1.72 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.38 20.32 6.85 -92.70 -0.63 19.68 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.42 11.36 4.68 -92.71 -0.43 10.92 16 37 H 0.20 1.73 7.65 -2.91 -0.02 1.70 16 38 H 0.24 -0.33 8.06 -2.91 -0.02 -0.35 16 39 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.23 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -75.18 341.77 1.96 -73.22 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.01 Total: 30.76 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.29 Total: 11.18 kcal Atomic # 7 Polarization: -140.06 SS G_CDS: -7.31 Total: -147.37 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.07 Total: -16.26 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -75.18 1.96 -73.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.262 kcal (2) G-P(sol) polarization free energy of solvation -75.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds