Wall clock time and date at job start Fri Apr 10 2020 21:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 120.00142 * 2 1 4 4 C 1.52997 * 109.47024 * 124.99925 * 3 2 1 5 5 H 1.08997 * 109.47295 * 305.00282 * 4 3 2 6 6 C 1.52997 * 109.47409 * 184.99949 * 4 3 2 7 7 C 1.52999 * 109.47409 * 175.00162 * 6 4 3 8 8 N 1.46503 * 109.47121 * 64.99797 * 4 3 2 9 9 C 1.34775 * 120.00479 * 204.99542 * 8 4 3 10 10 O 1.21282 * 119.99401 * 0.02562 * 9 8 4 11 11 C 1.50699 * 120.00293 * 179.72360 * 9 8 4 12 12 C 1.50701 * 109.47059 * 180.27709 * 11 9 8 13 13 C 1.38301 * 119.93218 * 269.73346 * 12 11 9 14 14 C 1.38105 * 120.06674 * 179.72959 * 13 12 11 15 15 C 1.38881 * 119.92714 * 0.56496 * 14 13 12 16 16 O 1.35745 * 120.06446 * 179.68818 * 15 14 13 17 17 C 1.34831 * 117.00312 * 174.48531 * 16 15 14 18 18 H 1.08007 * 119.99390 * 5.05163 * 17 16 15 19 19 C 1.38650 * 120.00734 * 185.05737 * 17 16 15 20 20 N 1.31557 * 119.99598 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00379 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47078 * 59.99446 * 21 19 17 23 23 H 1.48491 * 109.47153 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46794 * 299.99336 * 21 19 17 25 25 C 1.38874 * 119.86582 * 359.70135 * 15 14 13 26 26 C 1.38096 * 119.93103 * 0.02562 * 25 15 14 27 27 H 1.07999 * 119.99374 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99928 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99897 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46967 * 5.00290 * 3 2 1 31 31 H 1.09002 * 109.46989 * 245.00193 * 3 2 1 32 32 H 1.09007 * 109.46838 * 295.00557 * 6 4 3 33 33 H 1.09003 * 109.46658 * 54.99460 * 6 4 3 34 34 H 1.08998 * 109.46868 * 299.99871 * 7 6 4 35 35 H 1.08998 * 109.47135 * 60.00275 * 7 6 4 36 36 H 1.09003 * 109.46727 * 180.02562 * 7 6 4 37 37 H 0.97008 * 119.99632 * 25.00501 * 8 4 3 38 38 H 1.09000 * 109.47330 * 300.28221 * 11 9 8 39 39 H 1.09001 * 109.46857 * 60.27918 * 11 9 8 40 40 H 1.07997 * 119.96355 * 359.97339 * 13 12 11 41 41 H 1.07993 * 120.03458 * 180.27097 * 14 13 12 42 42 H 0.97000 * 120.00019 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.03768 * 179.97438 * 25 15 14 44 44 H 1.08007 * 119.96958 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7093 2.7045 1.2553 7 6 4.5858 2.7753 2.5073 8 7 4.0546 0.2968 1.0002 9 6 4.6913 -0.2172 2.0711 10 8 4.4197 0.1779 3.1852 11 6 5.7356 -1.2876 1.8850 12 6 6.2853 -1.6922 3.2285 13 6 7.3876 -1.0385 3.7484 14 6 7.8902 -1.4032 4.9820 15 6 7.2948 -2.4355 5.6951 16 8 7.7904 -2.8005 6.9050 17 6 7.0989 -3.7300 7.5947 18 1 6.2406 -4.2079 7.1457 19 6 7.4893 -4.0724 8.8803 20 7 8.5350 -3.4906 9.4270 21 14 6.5316 -5.3606 9.8356 22 1 6.5613 -6.6484 9.0967 23 1 7.1479 -5.5441 11.1740 24 1 5.1244 -4.9138 9.9952 25 6 6.1914 -3.0937 5.1678 26 6 5.6900 -2.7205 3.9364 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.3276 2.8534 0.3700 33 1 2.9468 3.4821 1.3009 34 1 3.9675 2.6264 3.3925 35 1 5.3482 1.9977 2.4616 36 1 5.0657 3.7526 2.5600 37 1 4.2716 -0.0194 0.1091 38 1 5.2854 -2.1541 1.4006 39 1 6.5436 -0.9026 1.2628 40 1 7.8533 -0.2393 3.1910 41 1 8.7483 -0.8894 5.3894 42 1 8.8084 -3.7303 10.3262 43 1 5.7264 -3.8971 5.7199 44 1 4.8322 -3.2323 3.5255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281269934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:10:55 Heat of formation + Delta-G solvation = -33.724250 kcal Electronic energy + Delta-G solvation = -24022.643026 eV Core-core repulsion = 20519.798532 eV Total energy + Delta-G solvation = -3502.844494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07222 -38.85366 -37.12156 -36.21935 -33.98407 -32.70230 -32.26637 -31.02560 -30.08710 -28.92494 -26.52965 -25.07182 -23.98946 -21.91658 -21.65329 -20.67589 -20.03043 -19.99419 -17.91909 -17.01227 -16.89077 -16.42104 -15.53917 -15.40961 -14.72136 -14.54388 -14.32119 -13.84910 -13.81870 -13.75372 -13.56327 -13.27018 -13.17729 -12.69094 -12.64228 -12.47329 -11.94640 -11.75797 -11.71399 -11.48149 -11.41505 -11.19000 -11.11657 -10.86434 -10.76818 -10.69395 -10.58451 -10.39209 -9.65958 -9.56821 -9.26986 -8.96306 -8.76276 -8.08501 -7.09711 -6.39287 -3.97877 1.97374 2.31335 2.33488 2.86847 3.16279 3.17479 3.20695 3.29152 4.01762 4.40169 4.60062 4.67001 4.76200 4.99119 5.03878 5.09047 5.14404 5.16667 5.32298 5.37186 5.38961 5.41373 5.46504 5.60538 5.70929 5.74873 5.79334 5.85091 5.91312 5.94547 6.11054 6.27830 6.32056 6.41743 6.44982 6.48302 6.54549 6.76915 6.98047 7.11479 7.30214 7.43611 7.50514 7.56686 7.90718 8.06053 8.43709 9.06416 9.77502 10.78918 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.002810 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.791807 B = 9961.228324 C =10512.797572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.101 4.101 4 C 0.149 3.851 5 H 0.088 0.912 6 C -0.132 4.132 7 C -0.146 4.146 8 N -0.734 5.734 9 C 0.508 3.492 10 O -0.513 6.513 11 C -0.081 4.081 12 C -0.168 4.168 13 C -0.060 4.060 14 C -0.191 4.191 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.232 4.232 26 C -0.057 4.057 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.395 0.605 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 7.944 -21.111 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.170 4.170 3 C -0.139 4.139 4 C 0.044 3.956 5 H 0.106 0.894 6 C -0.171 4.171 7 C -0.204 4.204 8 N -0.388 5.388 9 C 0.295 3.705 10 O -0.387 6.387 11 C -0.121 4.121 12 C -0.169 4.169 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.075 4.075 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.229 0.771 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.081 8.291 -19.897 24.237 hybrid contribution -0.502 -0.822 0.011 0.964 sum -11.583 7.469 -19.886 24.195 Atomic orbital electron populations 1.23858 0.95970 1.01860 1.01446 1.22913 0.96006 0.98454 0.99583 1.21075 0.98142 0.96187 0.98450 1.20955 0.88297 0.87436 0.98939 0.89361 1.21963 0.99557 0.96346 0.99235 1.21806 1.00281 1.00834 0.97444 1.46147 1.41343 1.41737 1.09601 1.20957 0.82266 0.82768 0.84501 1.90756 1.63740 1.59954 1.24244 1.20418 0.97018 0.97158 0.97509 1.18626 0.99985 1.01576 0.96702 1.20384 0.95345 0.97537 0.94530 1.20150 1.04125 1.00424 0.96369 1.19373 0.91401 0.92020 0.86938 1.83974 1.46786 1.53039 1.24432 1.21276 1.12112 1.16465 0.96862 0.89175 1.25275 0.96822 0.98568 0.95853 1.70032 1.23857 1.40712 1.15351 0.85793 0.79231 0.79845 0.78636 1.19539 1.20307 1.19508 1.21096 1.00994 1.05141 0.97919 1.20497 0.97277 0.95729 0.94000 0.88642 0.88520 0.87272 0.90138 0.90506 0.92085 0.91544 0.92100 0.92070 0.93792 0.77094 0.89222 0.89182 0.87482 0.86615 0.92037 0.85664 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.32 29.01 0.42 -0.98 16 2 C -0.15 -1.13 9.25 -36.03 -0.33 -1.46 16 3 C -0.10 -0.66 5.20 -27.88 -0.15 -0.81 16 4 C 0.15 1.35 2.24 -67.93 -0.15 1.20 16 5 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 6 C -0.13 -1.19 5.61 -26.73 -0.15 -1.34 16 7 C -0.15 -1.77 8.51 37.16 0.32 -1.46 16 8 N -0.73 -6.75 4.72 -53.81 -0.25 -7.00 16 9 C 0.51 6.71 6.39 -10.99 -0.07 6.64 16 10 O -0.51 -9.20 13.17 5.56 0.07 -9.12 16 11 C -0.08 -1.00 5.83 -29.04 -0.17 -1.17 16 12 C -0.17 -2.93 4.38 -104.57 -0.46 -3.39 16 13 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 14 C -0.19 -4.25 9.99 -39.39 -0.39 -4.64 16 15 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 16 O -0.18 -5.28 9.76 0.06 0.00 -5.28 16 17 C -0.39 -11.26 9.49 30.88 0.29 -10.97 16 18 H 0.09 2.41 5.20 -52.48 -0.27 2.13 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -25.94 13.67 55.48 0.76 -25.19 16 21 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 C -0.23 -5.29 9.17 -39.40 -0.36 -5.66 16 26 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 27 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 28 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.11 0.82 8.03 -52.49 -0.42 0.40 16 30 H 0.08 0.47 7.79 -51.93 -0.40 0.07 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 35 H 0.06 0.86 5.65 -51.93 -0.29 0.56 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.40 2.46 8.60 -40.82 -0.35 2.11 16 38 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 44 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -33.89 367.57 -7.85 -41.73 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.61 Total: 5.61 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -2.33 Total: -22.32 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.50 Total: -32.19 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.89 -7.85 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281269934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.008 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds