Wall clock time and date at job start Fri Apr 10 2020 21:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.63329 * 2 1 4 4 C 1.55149 * 110.72385 * 236.85798 * 2 1 3 5 5 C 1.54908 * 101.58516 * 206.13207 * 4 2 1 6 6 N 1.47426 * 104.82948 * 37.00904 * 5 4 2 7 7 C 1.34772 * 125.64789 * 155.83602 * 6 5 4 8 8 O 1.21288 * 120.00120 * 180.02562 * 7 6 5 9 9 C 1.50699 * 120.00272 * 0.02630 * 7 6 5 10 10 C 1.50701 * 109.47342 * 180.02562 * 9 7 6 11 11 C 1.38303 * 119.92906 * 89.99960 * 10 9 7 12 12 C 1.38108 * 120.06534 * 179.97438 * 11 10 9 13 13 C 1.38877 * 119.93181 * 359.97438 * 12 11 10 14 14 O 1.35747 * 120.06827 * 179.97438 * 13 12 11 15 15 C 1.34822 * 117.00161 * 5.53068 * 14 13 12 16 16 H 1.08004 * 120.00204 * 354.94245 * 15 14 13 17 17 C 1.38654 * 120.00200 * 174.94014 * 15 14 13 18 18 N 1.31553 * 119.99993 * 359.72918 * 17 15 14 19 19 Si 1.86806 * 120.00148 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47125 * 179.72603 * 19 17 15 21 21 H 1.48501 * 109.47019 * 299.72866 * 19 17 15 22 22 H 1.48501 * 109.46793 * 59.72617 * 19 17 15 23 23 C 1.38884 * 119.86025 * 0.25082 * 13 12 11 24 24 C 1.38097 * 119.93210 * 359.49481 * 23 13 12 25 25 C 1.47022 * 108.70439 * 336.09974 * 6 5 4 26 26 H 1.09000 * 109.88782 * 241.41360 * 25 6 5 27 27 C 1.53001 * 109.88193 * 120.25047 * 25 6 5 28 28 H 1.09004 * 109.46791 * 181.69154 * 1 2 3 29 29 H 1.08997 * 109.47609 * 301.68639 * 1 2 3 30 30 H 1.08994 * 109.47242 * 61.69178 * 1 2 3 31 31 H 1.09003 * 111.00328 * 88.05921 * 4 2 1 32 32 H 1.09002 * 111.00619 * 324.20644 * 4 2 1 33 33 H 1.09002 * 110.36651 * 278.17396 * 5 4 2 34 34 H 1.08994 * 110.46214 * 155.89216 * 5 4 2 35 35 H 1.08991 * 109.47054 * 59.99786 * 9 7 6 36 36 H 1.09003 * 109.46999 * 299.99778 * 9 7 6 37 37 H 1.07995 * 119.96803 * 359.95243 * 11 10 9 38 38 H 1.07998 * 120.03431 * 180.02562 * 12 11 10 39 39 H 0.97007 * 120.00140 * 0.27194 * 18 17 15 40 40 H 1.07997 * 120.03119 * 179.72764 * 23 13 12 41 41 H 1.08003 * 119.96612 * 180.23034 * 24 23 13 42 42 H 1.08996 * 109.47738 * 61.45602 * 27 25 6 43 43 H 1.09000 * 109.46746 * 181.45730 * 27 25 6 44 44 H 1.09001 * 109.47357 * 301.45122 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0201 0.0000 4 6 2.0790 -0.7933 -1.2150 5 6 3.4633 -1.2485 -0.6896 6 7 3.2445 -1.5518 0.7364 7 6 3.9915 -2.3870 1.4854 8 8 3.7180 -2.5623 2.6540 9 6 5.1667 -3.1029 0.8711 10 6 5.8276 -3.9690 1.9123 11 6 5.4151 -5.2778 2.0843 12 6 6.0192 -6.0741 3.0374 13 6 7.0423 -5.5595 3.8230 14 8 7.6377 -6.3396 4.7609 15 6 7.2698 -7.6360 4.8022 16 1 6.4743 -7.9922 4.1643 17 6 7.9125 -8.5120 5.6635 18 7 8.8850 -8.0794 6.4366 19 14 7.4023 -10.3081 5.7212 20 1 8.2418 -11.0297 6.7110 21 1 5.9748 -10.4045 6.1189 22 1 7.5846 -10.9177 4.3794 23 6 7.4510 -4.2434 3.6510 24 6 6.8466 -3.4537 2.6927 25 6 2.0727 -0.7974 1.2046 26 1 2.3666 -0.1112 1.9988 27 6 1.0027 -1.7634 1.7172 28 1 -0.3633 -1.0273 0.0303 29 1 -0.3634 0.5398 0.8744 30 1 -0.3633 0.4873 -0.9047 31 1 2.1850 -0.1482 -2.0872 32 1 1.4453 -1.6512 -1.4402 33 1 4.1932 -0.4463 -0.7991 34 1 3.7980 -2.1399 -1.2200 35 1 5.8834 -2.3714 0.4982 36 1 4.8215 -3.7265 0.0463 37 1 4.6195 -5.6774 1.4730 38 1 5.6970 -7.0962 3.1710 39 1 9.1498 -7.1466 6.4070 40 1 8.2434 -3.8390 4.2634 41 1 7.1666 -2.4313 2.5560 42 1 1.3985 -2.3303 2.5598 43 1 0.1274 -1.1988 2.0383 44 1 0.7197 -2.4492 0.9186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177017607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:12:07 Heat of formation + Delta-G solvation = -47.930708 kcal Electronic energy + Delta-G solvation = -24274.340582 eV Core-core repulsion = 20770.880050 eV Total energy + Delta-G solvation = -3503.460533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48195 -39.09150 -37.93861 -36.45895 -33.54155 -32.43005 -31.46575 -31.08724 -30.16147 -28.11190 -26.42190 -25.18949 -24.65150 -23.10892 -21.89903 -21.03744 -19.80336 -18.93912 -18.31154 -17.23560 -16.81226 -16.36168 -15.60450 -15.19150 -14.79028 -14.49193 -14.10195 -13.99575 -13.83896 -13.62391 -13.46455 -13.46178 -13.15344 -12.94272 -12.78891 -12.53051 -12.35305 -12.12638 -11.76362 -11.58969 -11.30886 -11.17889 -11.03548 -10.94279 -10.81552 -10.73736 -10.70579 -10.26412 -10.23238 -9.60059 -9.35191 -8.72855 -8.71201 -8.15811 -7.18351 -6.72534 -4.01042 2.23894 2.24416 2.78602 2.97237 3.26601 3.32023 3.48309 4.07268 4.15832 4.21886 4.43401 4.55032 4.84783 4.90477 4.94272 5.05195 5.12933 5.16826 5.20809 5.21409 5.26065 5.31148 5.36882 5.41026 5.41849 5.53331 5.64007 5.66979 5.69326 5.72954 5.83703 5.85795 5.94225 6.15423 6.20674 6.37135 6.41023 6.68117 6.89138 7.10778 7.27622 7.37686 7.49426 7.61948 7.79420 8.32671 8.45105 8.97235 9.66699 10.71627 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.030833 B = 0.002653 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.885252 B =10553.501752 C =10872.261176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.129 4.129 5 C 0.099 3.901 6 N -0.625 5.625 7 C 0.526 3.474 8 O -0.518 6.518 9 C -0.075 4.075 10 C -0.167 4.167 11 C -0.056 4.056 12 C -0.228 4.228 13 C 0.159 3.841 14 O -0.203 6.203 15 C -0.471 4.471 16 H 0.083 0.917 17 C 0.009 3.991 18 N -0.883 5.883 19 Si 1.096 2.904 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.194 4.194 24 C -0.059 4.059 25 C 0.138 3.862 26 H 0.071 0.929 27 C -0.163 4.163 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.282 0.718 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 15.348 -17.717 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.167 4.167 5 C -0.024 4.024 6 N -0.362 5.362 7 C 0.315 3.685 8 O -0.392 6.392 9 C -0.115 4.115 10 C -0.168 4.168 11 C -0.074 4.074 12 C -0.247 4.247 13 C 0.106 3.894 14 O -0.107 6.107 15 C -0.547 4.547 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.515 5.515 19 Si 0.920 3.080 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.213 4.213 24 C -0.077 4.077 25 C 0.035 3.965 26 H 0.089 0.911 27 C -0.221 4.221 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.723 13.737 -16.050 25.192 hybrid contribution -0.478 1.576 -0.931 1.892 sum -14.201 15.313 -16.982 26.917 Atomic orbital electron populations 1.21875 0.93906 1.02608 1.01800 1.22250 0.96507 0.99023 0.94238 0.89868 1.22865 0.95844 1.00393 0.97602 1.22303 0.97595 1.00838 0.81705 1.48724 1.30239 1.46026 1.11224 1.20726 0.83345 0.78150 0.86277 1.90734 1.69928 1.62247 1.16254 1.20392 0.94758 0.98356 0.97993 1.18667 1.01390 0.94592 1.02187 1.20517 0.97237 0.93021 0.96672 1.21112 1.01172 1.01521 1.00906 1.19231 0.91294 0.90897 0.87960 1.83660 1.58894 1.21648 1.46538 1.22200 1.22301 0.82211 1.27985 0.89933 1.26531 0.94485 1.05857 0.92732 1.70569 1.25430 1.19616 1.35848 0.83110 0.76127 0.71786 0.76980 1.19798 1.20752 1.20763 1.20130 1.05003 0.92899 1.03285 1.20386 0.95202 0.97659 0.94483 1.21494 0.85929 0.92952 0.96143 0.91095 1.22210 0.98169 0.99671 1.02086 0.91695 0.92275 0.92463 0.89935 0.90477 0.91391 0.90455 0.89122 0.89159 0.87776 0.85487 0.90824 0.86714 0.87351 0.91051 0.91690 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.03 37.16 0.30 -0.52 16 2 C -0.10 -0.67 3.49 -88.79 -0.31 -0.98 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -0.74 6.53 -24.59 -0.16 -0.90 16 5 C 0.10 0.72 6.69 -2.53 -0.02 0.70 16 6 N -0.63 -7.01 3.08 -163.02 -0.50 -7.51 16 7 C 0.53 7.83 7.62 -10.99 -0.08 7.75 16 8 O -0.52 -10.16 14.94 5.55 0.08 -10.07 16 9 C -0.08 -1.01 4.83 -29.03 -0.14 -1.15 16 10 C -0.17 -3.04 4.38 -104.57 -0.46 -3.49 16 11 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 12 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 13 C 0.16 4.07 6.65 -39.11 -0.26 3.81 16 14 O -0.20 -5.96 9.16 0.08 0.00 -5.96 16 15 C -0.47 -13.72 9.49 30.89 0.29 -13.42 16 16 H 0.08 2.27 5.20 -52.48 -0.27 1.99 16 17 C 0.01 0.26 5.49 -17.52 -0.10 0.16 16 18 N -0.88 -27.01 13.70 55.48 0.76 -26.25 16 19 Si 1.10 24.33 29.92 -169.99 -5.09 19.24 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.19 -4.34 9.99 -39.39 -0.39 -4.73 16 24 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 25 C 0.14 1.40 3.42 -66.96 -0.23 1.17 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 C -0.16 -1.74 7.88 37.16 0.29 -1.45 16 28 H 0.06 0.40 6.29 -51.93 -0.33 0.07 16 29 H 0.06 0.33 7.85 -51.93 -0.41 -0.08 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.49 7.47 -51.93 -0.39 0.10 16 35 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.09 1.01 7.79 -51.93 -0.40 0.60 16 37 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 39 H 0.28 8.83 7.97 -40.82 -0.33 8.50 16 40 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 41 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.07 1.01 6.75 -51.93 -0.35 0.66 16 43 H 0.06 0.56 6.79 -51.93 -0.35 0.21 16 44 H 0.05 0.56 7.52 -51.93 -0.39 0.17 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -34.75 355.45 -8.31 -43.06 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.53 Total: 3.88 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.39 Total: -21.74 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.26 Total: -33.76 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.08 Total: -16.03 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.09 Total: 19.24 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.75 -8.31 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177017607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.875 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds