Wall clock time and date at job start Fri Apr 10 2020 21:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39841 * 126.45572 * 2 1 4 4 C 1.35447 * 107.86760 * 180.02562 * 3 2 1 5 5 N 1.35543 * 108.87096 * 0.02562 * 4 3 2 6 6 C 1.46490 * 125.67771 * 180.02562 * 5 4 3 7 7 C 1.37657 * 108.64250 * 359.97438 * 5 4 3 8 8 C 1.46671 * 126.23055 * 179.73583 * 7 5 4 9 9 O 1.21696 * 119.99935 * 92.85371 * 8 7 5 10 10 N 1.34779 * 119.99827 * 272.85136 * 8 7 5 11 11 C 1.47401 * 125.59188 * 4.58615 * 10 8 7 12 12 C 1.54850 * 104.80952 * 204.61087 * 11 10 8 13 13 C 1.55124 * 101.77664 * 322.81060 * 12 11 10 14 14 H 1.09006 * 113.45690 * 159.24295 * 13 12 11 15 15 C 1.54045 * 108.26082 * 286.09337 * 13 12 11 16 16 N 1.46707 * 106.82561 * 135.80973 * 15 13 12 17 17 C 1.36930 * 125.32063 * 161.82444 * 16 15 13 18 18 H 1.08002 * 120.00131 * 354.25707 * 17 16 15 19 19 C 1.38815 * 120.00011 * 174.26484 * 17 16 15 20 20 N 1.31618 * 119.99907 * 6.08093 * 19 17 16 21 21 Si 1.86802 * 119.99997 * 186.07965 * 19 17 16 22 22 H 1.48491 * 109.47136 * 94.99247 * 21 19 17 23 23 H 1.48501 * 109.46952 * 214.99152 * 21 19 17 24 24 H 1.48500 * 109.47214 * 334.98609 * 21 19 17 25 25 C 1.46635 * 109.35526 * 341.81601 * 16 15 13 26 26 C 1.46739 * 125.58756 * 184.28142 * 10 8 7 27 27 H 1.08993 * 111.32897 * 56.12468 * 26 10 8 28 28 H 1.08999 * 109.47372 * 269.97394 * 1 2 3 29 29 H 1.09003 * 109.46916 * 29.97654 * 1 2 3 30 30 H 1.09005 * 109.46562 * 149.96894 * 1 2 3 31 31 H 1.08002 * 126.06595 * 0.04853 * 3 2 1 32 32 H 1.08002 * 125.56807 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47766 * 274.80284 * 6 5 4 34 34 H 1.08998 * 109.47329 * 34.80913 * 6 5 4 35 35 H 1.09006 * 109.47116 * 154.80317 * 6 5 4 36 36 H 1.09001 * 110.37028 * 323.44084 * 11 10 8 37 37 H 1.09000 * 110.36983 * 85.77137 * 11 10 8 38 38 H 1.08992 * 110.97346 * 80.94085 * 12 11 10 39 39 H 1.09005 * 110.96549 * 204.65796 * 12 11 10 40 40 H 1.08999 * 109.98653 * 255.15114 * 15 13 12 41 41 H 1.09001 * 109.98547 * 16.46500 * 15 13 12 42 42 H 0.96997 * 120.00172 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.75420 * 120.93159 * 25 16 15 44 44 H 1.08991 * 109.75849 * 241.63231 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6217 0.6930 -0.0006 5 7 3.6284 -0.6624 -0.0015 6 6 4.8226 -1.5109 -0.0018 7 6 2.3263 -1.1089 -0.0010 8 6 1.8900 -2.5092 -0.0071 9 8 1.6612 -3.0798 1.0432 10 7 1.7424 -3.1639 -1.1759 11 6 2.0748 -2.6271 -2.5078 12 6 1.1825 -3.4250 -3.4901 13 6 1.1950 -4.8389 -2.8521 14 1 0.3605 -5.4650 -3.1681 15 6 2.5728 -5.4754 -3.1160 16 7 3.0002 -6.0994 -1.8590 17 6 3.9737 -7.0550 -1.7404 18 1 4.4298 -7.4740 -2.6252 19 6 4.3743 -7.4855 -0.4829 20 7 3.7381 -7.0654 0.5900 21 14 5.8162 -8.6609 -0.3135 22 1 7.0572 -7.8878 -0.0546 23 1 5.5669 -9.5903 0.8175 24 1 5.9705 -9.4392 -1.5688 25 6 2.2220 -5.5396 -0.7494 26 6 1.2305 -4.5304 -1.3305 27 1 0.2430 -4.6369 -0.8815 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5144 31 1 2.0135 2.1549 0.0007 32 1 4.4972 1.3254 -0.0011 33 1 5.1689 -1.6506 -1.0259 34 1 5.6074 -1.0340 0.5853 35 1 4.5801 -2.4797 0.4350 36 1 1.8384 -1.5642 -2.5583 37 1 3.1286 -2.7933 -2.7317 38 1 0.1717 -3.0183 -3.5173 39 1 1.6205 -3.4431 -4.4882 40 1 2.4907 -6.2305 -3.8978 41 1 3.2872 -4.7075 -3.4127 42 1 4.0182 -7.3658 1.4687 43 1 1.6823 -6.3371 -0.2386 44 1 2.8886 -5.0381 -0.0479 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075729608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:13:58 Heat of formation + Delta-G solvation = 54.133320 kcal Electronic energy + Delta-G solvation = -26267.701018 eV Core-core repulsion = 22800.959065 eV Total energy + Delta-G solvation = -3466.741953 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28748 -39.85264 -37.51625 -34.77570 -33.59407 -32.19875 -30.89083 -30.21029 -28.96161 -27.89784 -26.30809 -25.10631 -24.68851 -23.09683 -21.43275 -20.41750 -19.98816 -19.36873 -18.14299 -17.23856 -16.69245 -16.33952 -15.37672 -15.04916 -14.91872 -14.35106 -14.23668 -13.81595 -13.49302 -13.25432 -13.18787 -13.06341 -12.77131 -12.65759 -12.56467 -12.14162 -11.88895 -11.87429 -11.83890 -11.55503 -11.38815 -11.10962 -11.03907 -10.75264 -10.50349 -10.24149 -10.17456 -9.89276 -9.69735 -9.55801 -8.58298 -8.44850 -8.17882 -7.92600 -6.81410 -5.69421 -3.04881 2.07876 2.55069 2.93798 3.26244 3.38768 3.43825 3.46945 3.51419 4.48257 4.64629 4.80918 4.86342 5.03454 5.13865 5.15519 5.25374 5.34997 5.42325 5.46494 5.50939 5.62831 5.65876 5.73919 5.76447 5.80057 5.83351 5.87960 6.02167 6.09167 6.15087 6.23687 6.30630 6.43750 6.48064 6.56704 6.63032 6.85701 6.99966 7.17157 7.35448 7.52612 7.68307 7.87658 7.94641 8.28527 8.54299 9.22604 9.83851 10.47983 11.40608 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.005139 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.007938 B = 5447.020588 C = 6176.339358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.126 4.126 3 C -0.202 4.202 4 C -0.003 4.003 5 N -0.420 5.420 6 C 0.067 3.933 7 C -0.022 4.022 8 C 0.600 3.400 9 O -0.517 6.517 10 N -0.592 5.592 11 C 0.105 3.895 12 C -0.123 4.123 13 C -0.110 4.110 14 H 0.099 0.901 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.913 5.913 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.175 3.825 26 C 0.115 3.885 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.138 0.862 32 H 0.164 0.836 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 15.644 -6.639 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C -0.226 4.226 4 C -0.136 4.136 5 N -0.094 5.094 6 C -0.074 4.074 7 C -0.137 4.137 8 C 0.386 3.614 9 O -0.391 6.391 10 N -0.325 5.325 11 C -0.018 4.018 12 C -0.162 4.162 13 C -0.130 4.130 14 H 0.117 0.883 15 C 0.016 3.984 16 N -0.329 5.329 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.201 4.201 20 N -0.560 5.560 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.050 3.950 26 C 0.011 3.989 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.181 0.819 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.230 14.979 -5.803 16.386 hybrid contribution 1.029 -0.570 0.161 1.187 sum -2.202 14.410 -5.642 15.631 Atomic orbital electron populations 1.20147 0.90015 1.01769 1.01806 1.19676 0.95146 0.90915 1.07635 1.20582 0.91713 0.98167 1.12178 1.21795 0.99246 0.82554 1.09994 1.43879 1.05243 1.06227 1.54077 1.22173 0.85617 0.95935 1.03679 1.20144 0.83926 0.93565 1.16022 1.16668 0.78427 0.83512 0.82815 1.90890 1.50213 1.67265 1.30721 1.48350 1.63315 1.15281 1.05597 1.22265 0.99401 0.97908 0.82275 1.22748 0.99802 0.95247 0.98370 1.23159 0.99992 0.95835 0.93992 0.88280 1.21298 0.91373 0.95007 0.90718 1.44233 1.42600 1.45285 1.00788 1.19011 1.11336 1.13456 0.92509 0.90450 1.24850 0.99426 1.00396 0.95471 1.70008 1.40958 1.47611 0.97393 0.86159 0.82453 0.80221 0.77293 1.21729 1.21713 1.20613 1.21134 0.91453 0.92658 0.89742 1.22539 0.98503 0.81869 0.95941 0.90292 0.91763 0.91771 0.92387 0.84462 0.81913 0.90374 0.89588 0.89034 0.90950 0.91552 0.90939 0.89975 0.94773 0.96497 0.93635 0.93292 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.20 36.00 0.37 -0.65 16 2 C -0.13 -1.87 6.21 -104.16 -0.65 -2.51 16 3 C -0.20 -2.54 10.76 -39.98 -0.43 -2.97 16 4 C 0.00 -0.04 11.38 -16.91 -0.19 -0.23 16 5 N -0.42 -6.15 3.16 -120.24 -0.38 -6.53 16 6 C 0.07 0.90 10.98 59.84 0.66 1.55 16 7 C -0.02 -0.38 5.47 -81.98 -0.45 -0.83 16 8 C 0.60 11.94 6.22 -12.86 -0.08 11.86 16 9 O -0.52 -12.52 16.79 5.19 0.09 -12.44 16 10 N -0.59 -10.80 2.99 -164.25 -0.49 -11.29 16 11 C 0.10 1.53 6.25 -2.57 -0.02 1.51 16 12 C -0.12 -1.57 6.35 -24.63 -0.16 -1.72 16 13 C -0.11 -1.80 4.35 -87.74 -0.38 -2.19 16 14 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 15 C 0.14 2.82 6.45 -3.38 -0.02 2.80 16 16 N -0.60 -15.32 3.38 -172.35 -0.58 -15.90 16 17 C -0.23 -6.54 10.24 -15.06 -0.15 -6.70 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 19 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 20 N -0.91 -27.63 10.28 55.49 0.57 -27.06 16 21 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.18 4.44 4.88 -3.99 -0.02 4.42 16 26 C 0.11 2.27 3.58 -66.61 -0.24 2.03 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.77 7.95 -51.93 -0.41 0.36 16 31 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.54 7.68 -51.93 -0.40 1.14 16 36 H 0.07 0.96 7.60 -51.93 -0.39 0.56 16 37 H 0.07 1.03 7.18 -51.93 -0.37 0.65 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 43 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 44 H 0.06 1.67 6.39 -51.93 -0.33 1.34 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -34.38 352.56 -9.20 -43.57 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.83 Total: 0.94 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.86 Total: 6.17 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.88 Total: -60.78 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.38 -9.20 -43.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075729608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.708 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds