Wall clock time and date at job start Fri Apr 10 2020 21:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47242 * 2 1 4 4 C 1.38599 * 119.55097 * 124.99624 * 3 2 1 5 5 C 1.38584 * 119.35093 * 180.02562 * 4 3 2 6 6 C 1.38633 * 118.48740 * 0.02562 * 5 4 3 7 7 C 1.39266 * 119.06177 * 359.97438 * 6 5 4 8 8 C 1.48169 * 119.72218 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00264 * 5.84254 * 8 7 6 10 10 N 1.34784 * 120.00141 * 185.84434 * 8 7 6 11 11 C 1.46501 * 119.99518 * 4.87688 * 10 8 7 12 12 C 1.46495 * 120.00182 * 184.87360 * 10 8 7 13 13 C 1.52998 * 109.47473 * 276.53338 * 12 10 8 14 14 H 1.09005 * 113.03794 * 49.39449 * 13 12 10 15 15 C 1.53940 * 113.77153 * 181.14619 * 13 12 10 16 16 C 1.53943 * 86.29086 * 137.90789 * 15 13 12 17 17 N 1.47582 * 86.24031 * 336.33902 * 16 15 13 18 18 C 1.36937 * 134.49291 * 204.69287 * 17 16 15 19 19 H 1.07999 * 120.00355 * 186.21764 * 18 17 16 20 20 C 1.38816 * 119.99823 * 6.22145 * 18 17 16 21 21 N 1.31620 * 120.00151 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47489 * 89.99563 * 22 20 18 24 24 H 1.48495 * 109.47319 * 209.99741 * 22 20 18 25 25 H 1.48502 * 109.47301 * 330.00085 * 22 20 18 26 26 N 1.31499 * 119.54456 * 305.25335 * 3 2 1 27 27 H 1.08995 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47140 * 300.00249 * 1 2 3 29 29 H 1.09000 * 109.47016 * 59.99771 * 1 2 3 30 30 H 1.09001 * 109.47140 * 239.99751 * 2 1 3 31 31 H 1.09004 * 109.47405 * 119.99383 * 2 1 3 32 32 H 1.07994 * 120.32688 * 0.02856 * 4 3 2 33 33 H 1.07994 * 120.75645 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.46831 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46730 * 176.02871 * 11 10 8 36 36 H 1.09003 * 109.47415 * 296.02828 * 11 10 8 37 37 H 1.09001 * 109.47618 * 56.02978 * 11 10 8 38 38 H 1.09000 * 109.47045 * 156.52915 * 12 10 8 39 39 H 1.09008 * 109.46836 * 36.53803 * 12 10 8 40 40 H 1.09004 * 113.74317 * 23.56396 * 15 13 12 41 41 H 1.08994 * 113.84266 * 252.26773 * 15 13 12 42 42 H 1.08996 * 113.76892 * 90.69608 * 16 15 13 43 43 H 1.08998 * 113.77278 * 221.98367 * 16 15 13 44 44 H 0.97001 * 119.99738 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9122 1.8348 0.9877 5 6 3.3711 3.1424 0.9840 6 6 2.9292 3.9955 -0.0154 7 6 2.0447 3.5113 -0.9760 8 6 1.5626 4.4105 -2.0504 9 8 2.0187 5.5320 -2.1544 10 7 0.6180 3.9846 -2.9124 11 6 -0.0087 2.6740 -2.7234 12 6 0.2181 4.8323 -4.0383 13 6 -0.8285 5.8444 -3.5681 14 1 -0.5349 6.3711 -2.6601 15 6 -1.3407 6.7717 -4.6851 16 6 -2.7410 6.5598 -4.0817 17 7 -2.2044 5.3028 -3.5248 18 6 -2.7585 4.1147 -3.1292 19 1 -2.1451 3.3652 -2.6515 20 6 -4.1089 3.8736 -3.3425 21 7 -4.8567 4.7872 -3.9244 22 14 -4.8647 2.2526 -2.8036 23 1 -5.3614 2.3771 -1.4097 24 1 -5.9954 1.9103 -3.7033 25 1 -3.8381 1.1816 -2.8693 26 7 1.6259 2.2523 -0.9342 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 3.2369 1.1451 1.7526 33 1 4.0567 3.4892 1.7430 34 1 3.2667 5.0209 -0.0490 35 1 -0.7908 2.5343 -3.4695 36 1 0.7430 1.8924 -2.8342 37 1 -0.4444 2.6201 -1.7257 38 1 -0.2057 4.2116 -4.8278 39 1 1.0900 5.3625 -4.4216 40 1 -1.2270 6.3567 -5.6866 41 1 -0.9796 7.7971 -4.6067 42 1 -3.0092 7.2966 -3.3246 43 1 -3.5227 6.4117 -4.8268 44 1 -5.8003 4.6188 -4.0730 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:14:51 Heat of formation + Delta-G solvation = 70.291861 kcal Electronic energy + Delta-G solvation = -25537.036005 eV Core-core repulsion = 22070.994739 eV Total energy + Delta-G solvation = -3466.041266 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74767 -39.05288 -37.59419 -35.04962 -34.26395 -32.60752 -32.13182 -30.09008 -28.46604 -27.67444 -26.29016 -24.65011 -24.18829 -23.23447 -22.28937 -21.35952 -19.58388 -18.97999 -17.21331 -16.75442 -16.56499 -15.99784 -15.52751 -15.29494 -14.88280 -14.74450 -14.32570 -14.02662 -13.74379 -13.62871 -13.19763 -13.12340 -12.78977 -12.48126 -12.35168 -12.11414 -11.83609 -11.49639 -11.38140 -11.29740 -11.10879 -11.02062 -10.89458 -10.64512 -10.46839 -10.06363 -9.98128 -9.83297 -9.61350 -9.31705 -9.09347 -9.07261 -8.68817 -8.06168 -6.75941 -5.68067 -3.00497 0.65431 1.12328 2.91646 3.32334 3.39869 3.43834 3.46993 3.87867 4.03283 4.45475 4.48832 4.67387 4.84592 4.97417 5.12737 5.20729 5.24139 5.28491 5.35595 5.49240 5.68115 5.74083 5.78774 5.84008 5.88925 5.94552 5.97897 6.02893 6.07105 6.16738 6.22722 6.26216 6.35110 6.47868 6.55734 6.62219 6.72618 6.81250 7.06441 7.36581 7.54599 7.69527 7.71363 7.84482 8.08557 8.46714 9.12418 9.79595 10.72651 11.48127 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.005479 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.579101 B = 5108.887803 C = 6821.691494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C 0.123 3.877 4 C -0.155 4.155 5 C -0.081 4.081 6 C -0.121 4.121 7 C 0.093 3.907 8 C 0.561 3.439 9 O -0.543 6.543 10 N -0.577 5.577 11 C 0.096 3.904 12 C 0.118 3.882 13 C 0.129 3.871 14 H 0.049 0.951 15 C -0.157 4.157 16 C 0.152 3.848 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.902 3.098 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.279 1.279 26 N -0.444 5.444 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.020 0.980 43 H 0.079 0.921 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.626 -7.313 7.076 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.017 4.017 4 C -0.175 4.175 5 C -0.107 4.107 6 C -0.142 4.142 7 C -0.045 4.045 8 C 0.347 3.653 9 O -0.422 6.422 10 N -0.306 5.306 11 C -0.046 4.046 12 C -0.005 4.005 13 C 0.021 3.979 14 H 0.066 0.934 15 C -0.196 4.196 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.105 0.895 20 C -0.207 4.207 21 N -0.568 5.568 22 Si 0.733 3.267 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.204 1.204 26 N -0.156 5.156 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.097 0.903 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.978 -7.241 6.362 17.812 hybrid contribution -0.039 -0.533 1.314 1.419 sum 14.940 -7.774 7.676 18.508 Atomic orbital electron populations 1.21742 0.93704 1.01961 1.03319 1.20483 0.97337 0.89975 1.02986 1.21459 0.93250 0.96362 0.90612 1.22160 0.98608 0.96924 0.99842 1.21570 0.98264 0.93246 0.97623 1.22096 0.96563 1.01729 0.93820 1.21270 0.96004 0.91185 0.96044 1.17889 0.80157 0.85832 0.81430 1.90743 1.59447 1.19203 1.72758 1.47672 1.36782 1.19353 1.26812 1.22182 0.97563 0.82422 1.02464 1.22013 0.97621 0.93270 0.87571 1.22675 0.87200 0.92175 0.95868 0.93401 1.23737 1.00008 0.97489 0.98383 1.22276 0.93501 0.86417 0.95114 1.46185 1.00624 1.10976 1.75125 1.19306 0.92650 0.91067 1.31772 0.89522 1.24780 0.96417 0.97896 1.01568 1.69819 1.05814 1.33390 1.47751 0.86268 0.79120 0.83474 0.77878 1.21897 1.21740 1.20442 1.67970 1.21789 1.02765 1.23090 0.92254 0.92830 0.90957 0.89916 0.90485 0.84660 0.84311 0.83626 0.89973 0.91696 0.91935 0.89545 0.90920 0.90735 0.93066 0.96247 0.90296 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.77 37.16 0.36 -1.23 16 2 C -0.07 -0.64 6.33 -27.88 -0.18 -0.82 16 3 C 0.12 1.43 6.18 -82.60 -0.51 0.92 16 4 C -0.16 -1.50 9.72 -39.32 -0.38 -1.88 16 5 C -0.08 -0.81 10.17 -39.31 -0.40 -1.21 16 6 C -0.12 -1.59 9.63 -39.05 -0.38 -1.97 16 7 C 0.09 1.48 6.64 -83.01 -0.55 0.92 16 8 C 0.56 10.43 7.60 -12.18 -0.09 10.34 16 9 O -0.54 -11.13 16.08 5.35 0.09 -11.04 16 10 N -0.58 -10.77 2.89 -182.57 -0.53 -11.30 16 11 C 0.10 1.68 7.11 59.85 0.43 2.11 16 12 C 0.12 2.25 5.17 -4.05 -0.02 2.23 16 13 C 0.13 2.78 4.50 -66.68 -0.30 2.48 16 14 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.16 -3.13 7.86 -25.80 -0.20 -3.33 16 16 C 0.15 3.70 7.67 -2.98 -0.02 3.68 16 17 N -0.60 -15.40 3.58 -169.66 -0.61 -16.01 16 18 C -0.22 -5.97 9.94 -15.06 -0.15 -6.12 16 19 H 0.09 2.21 4.31 -52.49 -0.23 1.99 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.92 -27.32 11.28 55.49 0.63 -26.70 16 22 Si 0.90 21.89 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 N -0.44 -6.44 5.57 -6.06 -0.03 -6.47 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.92 7.31 -51.93 -0.38 0.54 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 32 H 0.14 0.88 7.95 -52.49 -0.42 0.46 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.15 1.85 7.65 -52.48 -0.40 1.44 16 35 H 0.08 1.56 6.16 -51.93 -0.32 1.24 16 36 H 0.06 1.01 6.85 -51.93 -0.36 0.66 16 37 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 38 H 0.09 1.64 7.82 -51.93 -0.41 1.23 16 39 H 0.07 1.30 7.70 -51.92 -0.40 0.90 16 40 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 2.09 6.89 -51.93 -0.36 1.74 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -32.56 354.40 -9.16 -41.72 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.52 Total: 1.87 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -2.49 Total: 5.74 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.54 Total: -60.49 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.56 -9.16 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.011 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds