Wall clock time and date at job start Fri Apr 10 2020 21:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50711 * 109.47083 * 2 1 4 4 C 1.38601 * 119.54515 * 125.00089 * 3 2 1 5 5 C 1.38579 * 119.35071 * 179.97438 * 4 3 2 6 6 C 1.38640 * 118.48622 * 0.02562 * 5 4 3 7 7 C 1.39265 * 119.06147 * 359.97438 * 6 5 4 8 8 C 1.48168 * 119.72338 * 180.02562 * 7 6 5 9 9 O 1.21514 * 119.99666 * 354.78559 * 8 7 6 10 10 N 1.34775 * 120.00078 * 174.78291 * 8 7 6 11 11 C 1.46501 * 119.99903 * 5.08118 * 10 8 7 12 12 C 1.46500 * 119.99941 * 185.07771 * 10 8 7 13 13 C 1.53000 * 109.46832 * 84.24001 * 12 10 8 14 14 H 1.09005 * 112.96505 * 310.96325 * 13 12 10 15 15 C 1.53947 * 113.76677 * 179.28708 * 13 12 10 16 16 C 1.53949 * 86.29109 * 222.08782 * 15 13 12 17 17 N 1.47577 * 113.77261 * 82.64547 * 13 12 10 18 18 C 1.36935 * 134.49168 * 318.93611 * 17 13 12 19 19 H 1.08005 * 120.00067 * 2.93549 * 18 17 13 20 20 C 1.38817 * 120.00303 * 182.94211 * 18 17 13 21 21 N 1.31622 * 119.99546 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47327 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47064 * 119.99801 * 22 20 18 25 25 H 1.48498 * 109.47086 * 239.99835 * 22 20 18 26 26 N 1.31491 * 119.54846 * 304.72961 * 3 2 1 27 27 H 1.08991 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46824 * 299.99841 * 1 2 3 29 29 H 1.09001 * 109.47155 * 59.99389 * 1 2 3 30 30 H 1.09005 * 109.47214 * 240.00546 * 2 1 3 31 31 H 1.08992 * 109.47454 * 120.00097 * 2 1 3 32 32 H 1.07999 * 120.32438 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.76366 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.46434 * 180.02562 * 6 5 4 35 35 H 1.08991 * 109.47317 * 57.03641 * 11 10 8 36 36 H 1.09005 * 109.47007 * 177.04375 * 11 10 8 37 37 H 1.09001 * 109.46982 * 297.03792 * 11 10 8 38 38 H 1.08994 * 109.46918 * 204.23706 * 12 10 8 39 39 H 1.09000 * 109.47285 * 324.23945 * 12 10 8 40 40 H 1.09001 * 113.74355 * 336.43972 * 15 13 12 41 41 H 1.09003 * 113.74283 * 107.63832 * 15 13 12 42 42 H 1.09004 * 113.76504 * 137.90316 * 16 15 13 43 43 H 1.08996 * 113.77055 * 269.19548 * 16 15 13 44 44 H 0.96996 * 119.99874 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9122 1.8348 0.9877 5 6 3.3720 3.1420 0.9835 6 6 2.9309 3.9950 -0.0164 7 6 2.0463 3.5109 -0.9770 8 6 1.5659 4.4095 -2.0526 9 8 1.8675 5.5866 -2.0408 10 7 0.7944 3.9215 -3.0441 11 6 0.3385 2.5299 -3.0000 12 6 0.4115 4.7826 -4.1657 13 6 1.5282 4.7842 -5.2116 14 1 2.5131 4.9675 -4.7820 15 6 1.2196 5.6489 -6.4474 16 6 1.8184 4.4990 -7.2775 17 7 1.4852 3.6294 -6.1296 18 6 1.2360 2.2916 -5.9777 19 1 0.9622 1.8998 -5.0091 20 6 1.3354 1.4387 -7.0684 21 7 1.6688 1.9162 -8.2488 22 14 0.9961 -0.3864 -6.8610 23 1 0.6442 -0.6668 -5.4459 24 1 -0.1330 -0.7830 -7.7404 25 1 2.2079 -1.1604 -7.2320 26 7 1.6341 2.2495 -0.9401 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2363 1.1452 1.7531 33 1 4.0577 3.4889 1.7424 34 1 3.2691 5.0201 -0.0505 35 1 -0.2119 2.3569 -2.0754 36 1 -0.3120 2.3335 -3.8524 37 1 1.2004 1.8638 -3.0398 38 1 -0.5071 4.4062 -4.6157 39 1 0.2498 5.7985 -3.8053 40 1 0.1546 5.8056 -6.6186 41 1 1.7975 6.5721 -6.4925 42 1 1.2544 4.2700 -8.1818 43 1 2.8888 4.5981 -7.4575 44 1 1.7386 1.3203 -9.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:14:53 Heat of formation + Delta-G solvation = 51.225182 kcal Electronic energy + Delta-G solvation = -25534.069187 eV Core-core repulsion = 22067.201128 eV Total energy + Delta-G solvation = -3466.868059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83814 -40.42622 -39.33575 -36.52579 -35.11238 -34.26836 -33.50448 -31.04673 -30.17345 -29.51194 -27.69792 -25.75277 -25.28050 -25.23938 -23.73077 -22.25377 -21.01166 -20.73261 -18.80437 -18.33947 -17.72328 -17.02378 -16.98111 -16.72913 -16.52729 -15.93104 -15.66009 -15.59365 -15.02810 -14.74515 -14.61223 -14.54928 -14.08068 -13.91755 -13.56951 -13.22583 -13.12073 -13.08263 -12.95506 -12.77863 -12.70161 -12.50448 -12.31709 -12.19712 -11.91949 -11.78858 -11.47276 -11.28849 -11.17906 -10.85705 -10.82233 -10.18732 -10.03892 -9.57966 -8.85390 -7.83572 -5.15135 -0.33683 0.26644 1.44898 1.45892 1.55720 1.67617 1.99071 2.50018 2.83528 2.99910 3.33252 3.43894 3.56196 3.80711 3.95647 4.04406 4.10368 4.23151 4.30895 4.37855 4.38916 4.44378 4.50370 4.55299 4.60417 4.67393 4.78829 4.88075 4.91093 4.97978 5.03460 5.05529 5.09409 5.12054 5.14390 5.25563 5.34958 5.46372 5.52813 5.63355 5.68305 5.71730 5.98219 6.34544 6.77054 6.98815 7.09004 7.69076 8.65207 9.35029 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.012835 B = 0.005536 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.049537 B = 5056.652078 C = 6652.134983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.108 3.892 4 C -0.137 4.137 5 C -0.073 4.073 6 C -0.128 4.128 7 C 0.056 3.944 8 C 0.557 3.443 9 O -0.572 6.572 10 N -0.587 5.587 11 C 0.116 3.884 12 C 0.124 3.876 13 C 0.129 3.871 14 H 0.024 0.976 15 C -0.130 4.130 16 C 0.154 3.846 17 N -0.624 5.624 18 C -0.221 4.221 19 H 0.105 0.895 20 C -0.076 4.076 21 N -0.959 5.959 22 Si 0.963 3.037 23 H -0.255 1.255 24 H -0.294 1.294 25 H -0.301 1.301 26 N -0.465 5.465 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.007 0.993 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 -0.887 21.575 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.032 4.032 4 C -0.157 4.157 5 C -0.099 4.099 6 C -0.149 4.149 7 C -0.081 4.081 8 C 0.345 3.655 9 O -0.453 6.453 10 N -0.316 5.316 11 C -0.027 4.027 12 C 0.001 3.999 13 C 0.022 3.978 14 H 0.042 0.958 15 C -0.168 4.168 16 C 0.028 3.972 17 N -0.350 5.350 18 C -0.349 4.349 19 H 0.123 0.877 20 C -0.268 4.268 21 N -0.610 5.610 22 Si 0.792 3.208 23 H -0.178 1.178 24 H -0.221 1.221 25 H -0.229 1.229 26 N -0.178 5.178 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.196 0.804 33 H 0.196 0.804 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.244 -0.872 20.816 20.871 hybrid contribution 0.881 -0.645 -0.267 1.124 sum -0.363 -1.517 20.549 20.608 Atomic orbital electron populations 1.21680 0.94219 1.02496 1.01779 1.20604 0.97008 0.88845 1.04443 1.21989 0.94007 0.96961 0.90281 1.22649 0.96197 0.97299 0.99505 1.22013 0.97834 0.92869 0.97148 1.22222 0.96191 1.02303 0.94220 1.20970 0.98988 0.91601 0.96518 1.18399 0.78464 0.86748 0.81892 1.90693 1.59394 1.17104 1.78083 1.47775 1.48942 1.13789 1.21050 1.21988 0.99423 0.79812 1.01444 1.21862 0.97744 0.95106 0.85217 1.22648 0.95613 0.87351 0.92154 0.95824 1.23566 1.01951 0.96533 0.94772 1.22111 0.95337 0.87171 0.92550 1.46608 1.80537 1.03073 1.04781 1.19961 1.36435 0.82470 0.96013 0.87722 1.25611 1.03546 1.01829 0.95815 1.70042 1.56471 1.34485 0.99965 0.85203 0.76522 0.80682 0.78354 1.17844 1.22084 1.22924 1.67835 1.23782 1.02391 1.23789 0.90838 0.92606 0.93583 0.90642 0.86981 0.80423 0.80392 0.83952 0.90267 0.91737 0.92821 0.89367 0.89275 0.88878 0.90036 0.93818 0.97467 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.77 71.98 0.70 -1.75 16 2 C -0.07 -1.17 6.33 29.85 0.19 -0.98 16 3 C 0.11 2.32 6.18 42.70 0.26 2.59 16 4 C -0.14 -2.12 9.72 22.44 0.22 -1.91 16 5 C -0.07 -1.22 10.17 22.45 0.23 -1.00 16 6 C -0.13 -3.24 9.63 22.61 0.22 -3.02 16 7 C 0.06 1.78 6.68 41.89 0.28 2.06 16 8 C 0.56 20.99 7.61 86.88 0.66 21.65 16 9 O -0.57 -23.66 15.98 -3.76 -0.06 -23.72 16 10 N -0.59 -22.02 2.89 -849.84 -2.45 -24.48 16 11 C 0.12 4.05 7.21 127.77 0.92 4.98 16 12 C 0.12 4.67 5.26 86.38 0.45 5.12 16 13 C 0.13 5.60 4.49 45.09 0.20 5.80 16 14 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 15 C -0.13 -5.00 7.86 31.25 0.25 -4.76 16 16 C 0.15 7.66 7.45 86.44 0.64 8.30 16 17 N -0.62 -32.41 3.58 -690.90 -2.48 -34.89 16 18 C -0.22 -12.14 10.29 84.03 0.86 -11.28 16 19 H 0.11 5.34 3.77 -2.91 -0.01 5.33 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 21 N -0.96 -59.26 11.47 21.65 0.25 -59.01 16 22 Si 0.96 45.81 29.55 68.60 2.03 47.84 16 23 H -0.25 -10.98 7.11 99.48 0.71 -10.28 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 26 N -0.47 -13.42 5.50 -173.08 -0.95 -14.37 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.00 7.18 -2.39 -0.02 0.98 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.11 1.05 7.87 -2.39 -0.02 1.03 16 32 H 0.18 1.26 7.95 -2.91 -0.02 1.23 16 33 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.14 3.56 7.65 -2.91 -0.02 3.54 16 35 H 0.08 2.45 6.28 -2.39 -0.02 2.43 16 36 H 0.06 2.37 6.41 -2.38 -0.02 2.36 16 37 H 0.05 2.06 6.58 -2.39 -0.02 2.05 16 38 H 0.09 3.26 7.78 -2.39 -0.02 3.24 16 39 H 0.09 3.12 7.53 -2.39 -0.02 3.10 16 40 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16 41 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.04 2.38 7.31 -2.38 -0.02 2.36 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -74.32 354.09 3.89 -70.43 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.00 Total: 16.30 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 6.56 Total: 21.90 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -5.63 Total: -132.75 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.06 Total: -23.72 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.32 3.89 -70.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.651 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds